Pdar005587.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01002111.1:78955-92948[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.007 0.55 10.9 0.8 1 23 305 327 305 327 0.98 2 11 0.0035 0.28 11.8 5.8 1 23 334 356 334 357 0.94 3 11 0.2 16 6.3 3.0 1 23 361 383 361 383 0.97 4 11 0.0012 0.095 13.3 1.6 1 23 388 411 388 411 0.98 5 11 0.0054 0.43 11.2 0.3 1 23 415 438 415 438 0.94 6 11 0.021 1.7 9.4 0.3 3 21 452 470 451 475 0.92 7 11 1.2 96 3.8 0.4 2 23 519 541 518 541 0.94 8 11 0.025 2 9.2 0.6 2 19 557 574 556 578 0.92 9 11 0.0001 0.008 16.7 0.6 1 23 584 606 584 606 0.97 10 11 3.6e-05 0.0029 18.1 4.5 1 23 613 635 613 635 0.97 11 11 0.00014 0.011 16.2 1.9 1 23 641 664 641 664 0.92
Sequence Information
- Coding Sequence
- atgcgcTGTTGTGCTCCTAATTGTAAAAATGATTCTAGGCAGTTGTCTAAATCACTTGGGATTACATTTCATGTGTTGCCCGTGGAACAATCGCTTCGTGCATCCTGGCTGAAAGCTCTGGGCAAAGAGTCCTGGGAAGCGAAAGAAAGGAGTGCGGTTTGCTCGGAGCATTTCAACTCTGATGACTTATATGAAACGAAGAGTGGTTTACGGAAGATCAGACAAGGAGCTATACCAGTGATCCAGGACATTTGTGATCAAGAAATGCAGAGTTTAAtgGTGTGCAGGATATGTCTGGCAATGGATAGGAAGTTGTATTCAATTCATAAATACCAATTAGATGAGGCGTTCAAACATTTGACTGGATTgaatGTAAAAGATAATCTACCTCAACATTTATGCTCGGAATGTGCACATAGATTAATTTCCTGTCAGAATTTAAGACGAAGAAGTTTACAATCACACGAACTTATGATGGAAATTATCAATAAACAAGAAATcATAactttaaaagatataaaaattataaacaaagaatATAATTTGGAATCGAatcttacaataaaatataacattccCGAtcattatgatttttatattgaatataaCGAAAATACACAAGAGAACCCAAAAGaaatagatatagaaataaaaaatgaaatatatataGATGAGACTGGATCTGTTAAAGAGGAATATTCATCAGATGATAATATCCCTCTAGAAAGAACAAGAAAGAAGAAggtagttaaaaaaaagaaacaaatcgAACCTAAAATAGACAGGAGAAGAAAACCATTTCTAAACGATGATCTAAATGAAACTCTTTTCACAATAAAGGATTTAACTTTCGATGAACAAATAGCGGAAATAGAGAAAAGAAGAGATTCTGCGAATTATAAGAATTCAGTTTTCAAATGTACGGATTGTTTTAAAGGTTTCTTAGATGAAGATGCTTATAATAGTCATATAACAAGACATACTaatCAATGCGGCGAGTACGAGTGCGAGGTATGCAAGACGCATTTCAAGCAGACGCACGCGCTGCGCAAGCACGTGACCGCGCACCACACGCAGCGCTTCAGCTGCAACCGGTGCAACTATGTTACGACGCATCGTCAGACGGCGAGACTACACGAGAGATGGCATAAGGGAACCAAATACCAATGTCCGCATTGTCAAGAGGAATTCGCTAAATTCACAACATACATGGGTCATATACGTATAAAACATCCGTCTGATTTCGTATGCGAGCTTTGTGGGTATTCTTTTGTGAGTGAGAAAGGGATAGAAttacataaaaagttaaaacatcGACTCGAGAGTGACAAGgTACCAGATGACGGTCCGTTCTGTGATTCTTGCAATGTGAAGTTCATCTCTCAAGAAGCTTATAGAAGACATTTAATGGTGTCAGCCAAACATAATATTGGTGATAAgaATGATTCTAAACCTAAGAAAGGTAGGAAGACGAGAGTAGTGAAAGAGAGGGGGACGAGAGACAGAGAAGAGGAGAAGTATCCCAGTCAGATGAGGAAAGTGGAAGGTCCTATACCCTGTGAACAGTGCGGTCTGCAACTGGAGGACTCGCGCGCGTACCACGGCCACTTCCGGCGCATGCACCCGGACAAGAACCGGACAAAGTACCCCGCCATGAAGTCTCCTTGCATGTGCGAGCTCTGCGGCAGGATGTTCCAGAGTTACGCATTACTAAAGGACCATTCATGGGTTCACACAAACGAGCGACCGTTCGCTTGCGAGTCGTGCGGCAAATCGTTCAGAATGCGACAGCGTCTTGTCGCACACAGACGCGTGCACGCGCCGAGACGTGACACATACGTGTGTGCGTTGTGCGGAAAACATTTCTCAACGCACAGTAACAGGCAACGGCATATGTTTATCCACACGGGGTTGAAGCCGTTCGCTTGCGAGATGTGCGGCAAATGCTTCAAGCACGCGAGCGAGAAACGCGCCCACGTCGCCTACGTCCACCTCAAGAAGCCCTGGCCGAAGCGAGCTCGCGCAAAACGTACAGACAGACAGATCTCTCATCCCAAGAGTGGAATCTTGAGTAGGAAGAGACAGGTCCACTGCGCGGCGCCGGTTCGCAGCGATTGGGCCGTGCGGGGGCATGTCCGCGTCAAGGAGTTTCACCAGTCTGAAGTAGGGATGGCTCAGATGCAGAGTTGGGAGCTTCGCTGCCGTCGGGAGCGAGTGGCCGCATGGGACTGCATTTACGGGATAATAGACCGCACCACCCTGGGAGATGCTGGGACCGGGATCCTAGCAAAAACCTTCTATCTCGCAGATAGTAAGGAGGAAGATGACGCGGACCACACAGAGATGAGTAGAGTCGCGGAATTAAGAAACGTGGGGCCGCATAGTGTAACATGCGGCCCGCTCTTTCGAGTAGCACAAAATCATGTGGTCCGCGTCAAGCTTCAACGCGGGAAAGGCTCCCGACCCCAGCGTCTTCGAGGCGGACTTCTGCGGAGACATCCCGGAGCAGCGGCTTCCTGTACACATCAGACCGGTGCCTGCACTAGAAGAAAGCTGTTCTTATCCGGAAACCTGTCTATATTgctATTCCACACACATTCCATAGAGACAAGGATAGCAAGATGGTCATGTGAAAGACATGAAATTTTTGAGGGACCGTTATTTGCTGCGGATCCTCATTCTCAACTTCCTCCTGACTGCGCATCGTGGCCGGCAAGGAGCATGCGGGACTTTAACCACGCCGACCAAGTGGCAAGGCAGAAGATggtcgccaagtttggagggCAACTGATGGCAGCCAGATAA
- Protein Sequence
- MRCCAPNCKNDSRQLSKSLGITFHVLPVEQSLRASWLKALGKESWEAKERSAVCSEHFNSDDLYETKSGLRKIRQGAIPVIQDICDQEMQSLMVCRICLAMDRKLYSIHKYQLDEAFKHLTGLNVKDNLPQHLCSECAHRLISCQNLRRRSLQSHELMMEIINKQEIITLKDIKIINKEYNLESNLTIKYNIPDHYDFYIEYNENTQENPKEIDIEIKNEIYIDETGSVKEEYSSDDNIPLERTRKKKVVKKKKQIEPKIDRRRKPFLNDDLNETLFTIKDLTFDEQIAEIEKRRDSANYKNSVFKCTDCFKGFLDEDAYNSHITRHTNQCGEYECEVCKTHFKQTHALRKHVTAHHTQRFSCNRCNYVTTHRQTARLHERWHKGTKYQCPHCQEEFAKFTTYMGHIRIKHPSDFVCELCGYSFVSEKGIELHKKLKHRLESDKVPDDGPFCDSCNVKFISQEAYRRHLMVSAKHNIGDKNDSKPKKGRKTRVVKERGTRDREEEKYPSQMRKVEGPIPCEQCGLQLEDSRAYHGHFRRMHPDKNRTKYPAMKSPCMCELCGRMFQSYALLKDHSWVHTNERPFACESCGKSFRMRQRLVAHRRVHAPRRDTYVCALCGKHFSTHSNRQRHMFIHTGLKPFACEMCGKCFKHASEKRAHVAYVHLKKPWPKRARAKRTDRQISHPKSGILSRKRQVHCAAPVRSDWAVRGHVRVKEFHQSEVGMAQMQSWELRCRRERVAAWDCIYGIIDRTTLGDAGTGILAKTFYLADSKEEDDADHTEMSRVAELRNVGPHSVTCGPLFRVAQNHVVRVKLQRGKGSRPQRLRGGLLRRHPGAAASCTHQTGACTRRKLFLSGNLSILLFHTHSIETRIARWSCERHEIFEGPLFAADPHSQLPPDCASWPARSMRDFNHADQVARQKMVAKFGGQLMAAR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01140256;
- 90% Identity
- iTF_01140256;
- 80% Identity
- iTF_01140256;