Pdar005584.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- THAP3
- Assembly
- GCA_013186455.1
- Location
- QDHC01002111.1:142121-154076[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0098 0.78 10.4 0.3 1 23 339 361 339 361 0.97 2 11 0.0017 0.14 12.8 1.3 1 23 368 391 368 391 0.96 3 11 0.2 16 6.3 0.2 1 23 395 417 395 417 0.94 4 11 0.013 1 10.0 3.3 1 23 422 445 422 445 0.98 5 11 0.0024 0.19 12.3 0.6 1 23 449 472 449 472 0.95 6 11 3.1 2.5e+02 2.5 0.1 2 19 485 502 485 505 0.73 7 11 0.063 5 7.9 0.2 2 23 556 578 555 578 0.96 8 11 0.044 3.5 8.3 0.1 3 20 595 612 594 615 0.92 9 11 3.6e-07 2.9e-05 24.4 1.6 1 23 621 643 621 643 0.99 10 11 4e-05 0.0031 17.9 1.4 1 23 650 672 650 672 0.98 11 11 0.00034 0.027 15.0 4.1 1 23 678 701 678 701 0.94
Sequence Information
- Coding Sequence
- ATGCGTTGTTGTGTGCCAAATTGTACCAACGATACGAGACGGACAAGTAAAAGTCATGGAATTACATTTCATATGTTTCCAAAGGAACCGAACTTACGTACCAAATGGATAGAAGCTCTCGCAATTATGGATTGGGAGCCGAAAAATCGAAGTACTATATGTTCTGAACACTTCCGAGCTGAAGACTTTTATGAAACCAAAGTTGGACTTAGGAAAATACAGAATGGAGCTATACCAGTTTTACAAgaTTCCAGTAAAGATTTGTCTTCATCAGCAGTTAATACggTGTGTAGGATATGTCTTGCTATGGATAGAAAGCTTTATCATATGATTGATTATAAATTAGATCTGCCGTATCAACAAATAACTGGGTTGACGATGAGCGAAGATGACAATTTACCTCAGAAGTTGTGTTGGGAGTGTACGCACAGACTTGTGTCGTGTCACAGTTTTAGAAATAAAGCGATAATGAGTCAAGGATTGTTGACAGATGTGTTGGAAAGGGAGAAAGATttaacaataaaaagtataaaatcaataaatccAAAAGCGTAcagattaaatacaaatttaatacaaaagttcTATGAAGCTAAtgattttgatataataataaacgaaGATGGTTTAAAAACTGAAGTCACAGATTTTGAAGATTTTGATGTGAAAGAAGAAATTCAAGCGATACCTttagaaattgaaataaaacatgaacATAATTATGATGAATACAACAGTTTCGAAAGTGAAGATGATAAGAAATTGAgtgaagttaataaaaaaaatgataagattaaaagaaagaaaaaagtaaaagttgaAAAGCAATCGAGAGTTAAGAATGATGATAATCCAATAATTACTATGGATagGTATAAAAAGTCTTACGTCAAACGACGTAAACATACAGACGGTATGGACgaatctctatttataataaaaacattaacataTGAAGAACAGATTgaagaaataacaaaacgtCAATACAATCATAAATATACATCAGCACCGTTCAAATGTGAAATATGTTATAGAGGTTTTCCTTTGAAAGAAAGATATGAAGCACATCTAGTAAGACATACTGATCAAAGCGGTGCGTATGAATGTTTTGTTTGCAAGACGAGGTTAAAAACAGCTCGGGCTTTGAGAAAACATTTGACTTCTCAGCATACGGAGCAGTTTAATTGTAAAGGATGTCCTTTCGTTACTAGGAACAGaggtGTTGCCAGAGAACACGAGAGATGGCACGCTGGTACTAAATACAAGTGTCCCCATTGTCCCTGCGAATTTGACAAAATGACAACATATTTGGGGCATATCAGAATAAAGCATGTATCCGACTTCGTGTGCGAACTGTGCGGTTATACGTTTATTAGTCAAAAAGGTATTGATGTACATAAGAAGAAAAAACATCGATTACATGATAGAACGATGTCTCTAGAAGGTCCGTACTGTGATGTATGTggtgttacatttttatcacaaGAAGCACATGCGAGACATTTAAAGTTGTCTTCGAGACATAGCAGCGATGATGACCCGAATAGGATCCGAAACGACTCTCAGAACAACAGTGTTGTTCGTGCCGGAGCCGCGCGCCGCGTCGAGCGCCGGCCCGTGGCGAACCCTACCGACGATACTGTACCACAACAAGGACCTATTACATGCGAACAATGTGGTATACAATTGCGGGACTTACGTCTGTACGCACAACACTTCAGACGGGAACATCCGGACAAGAACCGGACTATGTATCCAGCGATGAAGACTCCGGCTATGTGCGAACAGTGCGGAAGATTGTTCCAGAGTATGGCACTATTAAAAGACCATATGTGGGTCCACACTGGTGTGAAAAGATTCAAATGTACTAGTTGTGAAAAAAGTTTCACACAGCGCAGTAATTTAGTACTACATCTACGTGTGCATAATGAACAACGACCGCTATACGAGTGTCCACTCTGCGGAAAAAGATTCGCCTTCTTTAACAATAGGAGACGTCATATGTTTATCCATACCGGTTTAAAACCTCACCGTTGTGAGACTTGCGGTAAGTGTTTCACTACAGCTGGCGAGCAGCGCGCGCACGTACAGCACGTGCACCTCAAGAAGCCCTGGCCGAGACGCGCGCGCGCACGCCGAGACTGGGCCAAGACGCAACCCTAG
- Protein Sequence
- MRCCVPNCTNDTRRTSKSHGITFHMFPKEPNLRTKWIEALAIMDWEPKNRSTICSEHFRAEDFYETKVGLRKIQNGAIPVLQDSSKDLSSSAVNTVCRICLAMDRKLYHMIDYKLDLPYQQITGLTMSEDDNLPQKLCWECTHRLVSCHSFRNKAIMSQGLLTDVLEREKDLTIKSIKSINPKAYRLNTNLIQKFYEANDFDIIINEDGLKTEVTDFEDFDVKEEIQAIPLEIEIKHEHNYDEYNSFESEDDKKLSEVNKKNDKIKRKKKVKVEKQSRVKNDDNPIITMDRYKKSYVKRRKHTDGMDESLFIIKTLTYEEQIEEITKRQYNHKYTSAPFKCEICYRGFPLKERYEAHLVRHTDQSGAYECFVCKTRLKTARALRKHLTSQHTEQFNCKGCPFVTRNRGVAREHERWHAGTKYKCPHCPCEFDKMTTYLGHIRIKHVSDFVCELCGYTFISQKGIDVHKKKKHRLHDRTMSLEGPYCDVCGVTFLSQEAHARHLKLSSRHSSDDDPNRIRNDSQNNSVVRAGAARRVERRPVANPTDDTVPQQGPITCEQCGIQLRDLRLYAQHFRREHPDKNRTMYPAMKTPAMCEQCGRLFQSMALLKDHMWVHTGVKRFKCTSCEKSFTQRSNLVLHLRVHNEQRPLYECPLCGKRFAFFNNRRRHMFIHTGLKPHRCETCGKCFTTAGEQRAHVQHVHLKKPWPRRARARRDWAKTQP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01140252;
- 90% Identity
- iTF_01140252;
- 80% Identity
- iTF_01140252;