Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01001504.1:654691-663356[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0057 0.45 11.2 4.1 1 23 276 298 276 298 0.99

2 11 0.0047 0.38 11.4 0.6 2 23 306 327 305 327 0.94

3 11 0.14 11 6.7 0.5 1 23 331 353 331 353 0.96

4 11 0.00027 0.021 15.3 0.9 1 23 358 381 358 381 0.98

5 11 0.026 2 9.1 0.1 1 23 385 408 385 408 0.93

6 11 0.19 15 6.4 0.1 3 21 430 448 429 453 0.91

7 11 0.00054 0.043 14.4 0.6 3 23 462 483 462 483 0.97

8 11 0.28 22 5.8 0.3 3 23 504 525 502 525 0.96

9 11 9.7e-05 0.0077 16.7 1.3 1 23 536 558 536 558 0.97

10 11 1e-06 8.1e-05 22.9 1.5 1 23 564 586 564 586 0.99

11 11 7.7e-05 0.0061 17.0 0.6 1 23 620 643 620 643 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0057	0.45	11.2	4.1	1	23	276	298	276	298	0.99
2	11	0.0047	0.38	11.4	0.6	2	23	306	327	305	327	0.94
3	11	0.14	11	6.7	0.5	1	23	331	353	331	353	0.96
4	11	0.00027	0.021	15.3	0.9	1	23	358	381	358	381	0.98
5	11	0.026	2	9.1	0.1	1	23	385	408	385	408	0.93
6	11	0.19	15	6.4	0.1	3	21	430	448	429	453	0.91
7	11	0.00054	0.043	14.4	0.6	3	23	462	483	462	483	0.97
8	11	0.28	22	5.8	0.3	3	23	504	525	502	525	0.96
9	11	9.7e-05	0.0077	16.7	1.3	1	23	536	558	536	558	0.97
10	11	1e-06	8.1e-05	22.9	1.5	1	23	564	586	564	586	0.99
11	11	7.7e-05	0.0061	17.0	0.6	1	23	620	643	620	643	0.98

Sequence Information

Coding Sequence: ATGGAACACATAAAAGTGTGTAGAATATGCCTCGTAATGGATGTAAACATGCAAAATCTTCTGGATTTTCCATTGggaaattattttgaacatGTTACAGGAATAAATCCTCTAAAGATGACAGATCTACCTCCTTTTGTTTGCTACGAATGtgcaacattaataaaaaagttcaatAACTTCCGAGAGAGATGTCTGAGAGGGCAATGTGCACTTCTTGGGATACTGGAAACAACTGGGAAGatatCAAAAGAAGATGTGGAACAAATcgatagaaattattttcaattaacatCGAATCTTTCATTTTCTAGTaaagataaacatttttgtatagattttgaagacataaataatattaaaatggaattgtttgaagaaacaaataatgtagaatataatgtggaattaaatacagataatataaaacaggAGAGTAATTTTGATGATTTTGCATCTATGTCTATGTCCAGTGATAATGAACCATTATCTGTACATAAAAGtagtaaagttaaaaaagtaaaattagttaaaaagaAACCGAGGAAAAAAGATAATGCAAAATGTCAAATATCAGAGAATAATCTTGGAGAATCTTTACATGagactgTAGAAAAAGACTCGTCAATACAACAAGATTTCTTAGAAGAGAGACCTAAGAAGAGAGGAAGGCCTAAGAAGAACAAAAAGCTTGAAGAAAAATTCACAAATCTTGACGATGAATTAAATGTTGAGGAATATGTTACAATAATAACACAAAcaATGGAAGAACAAATAGAAGAGATAATGAATCGGAAGACTTCAAGTAACTATTTAAATTCACCTTACAAATGTAATCTATGCtataaaggttttataaatatacaagcaTGGCATCACCATCTCAGAAAACATGAACCGAGCGCGGGTGACATAGAGTGCGCGGTGTGCAAGATGCGGTTCAAGACGAAGCGCGTGCTGATGAAGCACGCCTCCAACCACGAGAAGAAGTTCGCCTGCAAGGCCTGCCCCTACATCTCCCGCACCACGACGCAAGCGCGGCAACACCAGCGCTGGCACAAAGGTGTCACATACAAGTGTCAGTACTGCGACGAAGTATCCACtaaatGGACGTCATATTTGAGCCACGTGAGGATAAAGCACCCCTCGCAGCACATCTGCGGCGCCTGCGGGTACTCCTTCGTCAGCCGCCTCGGCCTCGCCATGCACCGCGCCATGATGCACAAGGACCTGGACATGTCAAAAGAGAAGTTAGAGAAGTGCTCGGACTCGGGCTCGGGTCGGTACTGCGCGCAGTGCGAGGTGCGCTTCGTGTCGGAGGAGGCGTGGCGCCGCCACCTCGTCACCTCCGCCAACCATGTGCAACATGTCTTCAAcaacGGTTGTCGGGTTTGCGGTGAAATATTCGATAATGCTGAAGAATTGCGCGTCCATCATAGACAGAAGCACGCGAGGAAACGACCCGCTAACTACGGCAAGAAGTCTTCTACACTCAAGTGGCCTAGTAACTGTGAACATTGTTCGGAAGAGATACCTAACGCGCGCGAGTACTGGGTCCACTTCCGGCGAGTTCACCCCGACAAGACTTACCCCGTGCCTAAGAACCACATCTGCGATATTTGCGGCAAAGGATTCAGggGTAATGCGTTTCTATCGTACCACAAGCGCACGCACAGCGAGGAGCGCACGTTCAAGTGCCCGCAGTGCCCCAAGGCCTTCCACAACCGCGTCAACCTGCAGATGCACGCGCGCACGCACTCGGACGCGCGCCCCCATCCCTGCACACTCTGCTGCAAGGCATTCAAGTGTAAAGCCGCCCTTGACAGGCACACCAGGTGTCACACCGGTGTGAAGCCGTACGAGTGCGGTATCTGCGGCAAGGCGTTCGCGCAGTCCAACAGCTGCAAGCTGCACGTGCGCACCGTGCACCTCAAGCAGCCCACGCCCTACGTCAGCCGCGCGCGTCTCGAGCGCCGCGCGCGCGCCCCGCCGCACCCCGCCACCCCGCCACCGCTCTACTGA
Protein Sequence: MEHIKVCRICLVMDVNMQNLLDFPLGNYFEHVTGINPLKMTDLPPFVCYECATLIKKFNNFRERCLRGQCALLGILETTGKISKEDVEQIDRNYFQLTSNLSFSSKDKHFCIDFEDINNIKMELFEETNNVEYNVELNTDNIKQESNFDDFASMSMSSDNEPLSVHKSSKVKKVKLVKKKPRKKDNAKCQISENNLGESLHETVEKDSSIQQDFLEERPKKRGRPKKNKKLEEKFTNLDDELNVEEYVTIITQTMEEQIEEIMNRKTSSNYLNSPYKCNLCYKGFINIQAWHHHLRKHEPSAGDIECAVCKMRFKTKRVLMKHASNHEKKFACKACPYISRTTTQARQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSQHICGACGYSFVSRLGLAMHRAMMHKDLDMSKEKLEKCSDSGSGRYCAQCEVRFVSEEAWRRHLVTSANHVQHVFNNGCRVCGEIFDNAEELRVHHRQKHARKRPANYGKKSSTLKWPSNCEHCSEEIPNAREYWVHFRRVHPDKTYPVPKNHICDICGKGFRGNAFLSYHKRTHSEERTFKCPQCPKAFHNRVNLQMHARTHSDARPHPCTLCCKAFKCKAALDRHTRCHTGVKPYECGICGKAFAQSNSCKLHVRTVHLKQPTPYVSRARLERRARAPPHPATPPPLY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -