Basic Information

Insect: Papilio dardanus
Gene Symbol: topi_1
Assembly: GCA_013186455.1
Location: QDHC01003372.1:1247990-1250097[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.0048 0.38 11.4 0.0 2 23 38 59 37 59 0.96

2 8 0.032 2.5 8.8 2.9 1 23 165 188 165 188 0.92

3 8 2.6e-06 0.00021 21.6 1.0 1 23 201 224 201 224 0.97

4 8 6.4e-06 0.00051 20.4 3.3 2 23 262 283 261 283 0.97

5 8 0.00057 0.045 14.3 5.4 1 23 289 311 289 311 0.97

6 8 2.1e-05 0.0017 18.8 4.3 1 23 317 339 317 339 0.98

7 8 8.3e-06 0.00066 20.1 3.4 1 23 345 367 345 367 0.98

8 8 0.08 6.4 7.5 5.0 1 20 373 392 373 394 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.0048	0.38	11.4	0.0	2	23	38	59	37	59	0.96
2	8	0.032	2.5	8.8	2.9	1	23	165	188	165	188	0.92
3	8	2.6e-06	0.00021	21.6	1.0	1	23	201	224	201	224	0.97
4	8	6.4e-06	0.00051	20.4	3.3	2	23	262	283	261	283	0.97
5	8	0.00057	0.045	14.3	5.4	1	23	289	311	289	311	0.97
6	8	2.1e-05	0.0017	18.8	4.3	1	23	317	339	317	339	0.98
7	8	8.3e-06	0.00066	20.1	3.4	1	23	345	367	345	367	0.98
8	8	0.08	6.4	7.5	5.0	1	20	373	392	373	394	0.93

Sequence Information

Coding Sequence: ATGAGTGCTGACGCAGCGTCCTTACCGTGTCCAATATGTTTACATACTGGTGTTTTCAACTCTGCTCAAGCGTTAAAAGACAGATTGATCTACGTCTCCACCAACAATATAGTGTGTCCAATATGTCAGGAATCTTTGTCAGGACTGGATAAATTAACCATACATCTCTTCAGTCACGTTTCGTTATTATCGCCACAAGGATTGTTGGAAAATGAAAAGACGGAGCCAAAATCTGAAGCTAAACATGCGAGCCACAAATCTCATACGACTACGACGATGAAGAAAACAAGAACGACGGCACcttctaaaaataaagtaccaGTGACTTCGGCGCCAGTTAAGTTCGTTAAAATATATCCAAAGTTACCAGTGATTGCTTTGAATACTGTTCCCATTATAGATTTACAGAGTACCGTAGATGGATgtgttcaaaataataattcgatGTACATACAAACCATGAAAACTGAAACAACTACCGTGAAAACCGACCataaatgtaatgtttgtGGTTTACGCTTTATAGATTccaacatattaaaaatgcataaatgtttattgcaCAATTTAGATGACAAAACtgaaaacaacttttcaaGCTACAATTGCCATTTATGTcctaaaacttttaaaatgagGGGTTCACTTATGGTCCATTTAAGAGTAGCGCACTACGGCTTTTCTTCCCAATCTGACacgacaaaaaaattaaaggatAAAAGTGGAAATCTTGAAACAGAAAGTATACCTACAATACCAGATAGGAGTGATGGGAAACAGTGGCAGTGTGATGTTTGCCGCAAAAGCTTTAcgacaaaatactttttgaagAAGCACAAACGTCTTCATACAGGAGAAACACCGTACGCATGTACACAATGTAACAAAACTTTTACCTTTCAACAATCTTACCACAAACATCTCCTTTATCACAATGATGAAAAACCTCATGTATGTAATTACTGCAATCGAGCTTTTAAGGAATTATCGACTCTACATAACCACCAACGCATACATACCGGAGAAAAGCCGTTTTCCTGTGAAACATGTGGGAAATGCTTTCGTCAACGTGTTTCTTATTTAGTGCATCGCAGAATACACACAGGCGCCATGCCTTATAAATGTACAGCTTGCAAAAAAAGCTTTCGATATAAAGTATCGCAAAGAACGCATAAGTGTCAAGCTCAGCCGCCTGGTACTGTCGTTCGGCAGTCTGGTGATCTAGTAGAAAAACTTAGAAAGAAATGTACAAGCGACCCTGTATCTACTACCAATGAAGGAAATTGCAATAACCTAAATTACAGAGAAATATCTGAGGCTAATGCGGAATTAGTTCGCACTGGAGCAAAATTATCTTTGGAAGACATTGAATCCGAtggtttctctataatatcaGAAGCTTTTACCGAAACTAACCGACGCCACGACGCAATAGCAGATCCTGATTACTCTCGTGTTAATAGTAACGTTACGGAATACAAAAACTACGAAATGTTCGGAGATCATCTCGAAGATTTGATTGACTCTGTACCAATTAATGATAAAAGTATCCCGTCGCCatcagatattttaaaaaacttatgttTGTctaatgatgatgattttgtACTGTGA
Protein Sequence: MSADAASLPCPICLHTGVFNSAQALKDRLIYVSTNNIVCPICQESLSGLDKLTIHLFSHVSLLSPQGLLENEKTEPKSEAKHASHKSHTTTTMKKTRTTAPSKNKVPVTSAPVKFVKIYPKLPVIALNTVPIIDLQSTVDGCVQNNNSMYIQTMKTETTTVKTDHKCNVCGLRFIDSNILKMHKCLLHNLDDKTENNFSSYNCHLCPKTFKMRGSLMVHLRVAHYGFSSQSDTTKKLKDKSGNLETESIPTIPDRSDGKQWQCDVCRKSFTTKYFLKKHKRLHTGETPYACTQCNKTFTFQQSYHKHLLYHNDEKPHVCNYCNRAFKELSTLHNHQRIHTGEKPFSCETCGKCFRQRVSYLVHRRIHTGAMPYKCTACKKSFRYKVSQRTHKCQAQPPGTVVRQSGDLVEKLRKKCTSDPVSTTNEGNCNNLNYREISEANAELVRTGAKLSLEDIESDGFSIISEAFTETNRRHDAIADPDYSRVNSNVTEYKNYEMFGDHLEDLIDSVPINDKSIPSPSDILKNLCLSNDDDFVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01142625;
90% Identity: -
80% Identity: -