Pdar005586.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01002111.1:40771-45679[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 7 5.6e+02 1.4 0.0 1 14 59 72 59 76 0.78 2 10 0.058 4.6 8.0 0.3 1 21 211 231 211 234 0.89 3 10 0.059 4.7 8.0 1.0 3 23 263 284 261 284 0.91 4 10 1.4e-06 0.00011 22.6 2.7 1 23 288 310 288 310 0.98 5 10 3.6 2.8e+02 2.4 0.8 2 23 317 337 316 337 0.91 6 10 0.0021 0.17 12.5 1.8 1 21 343 363 343 368 0.94 7 10 2.1e-06 0.00017 22.0 0.8 1 23 376 399 376 399 0.97 8 10 9.7e-05 0.0077 16.7 3.4 1 23 405 428 405 429 0.97 9 10 5e-05 0.004 17.6 0.7 2 23 439 460 438 460 0.94 10 10 5.2e-05 0.0041 17.6 2.3 3 23 468 489 466 489 0.96
Sequence Information
- Coding Sequence
- ATGGACGATAATTCagaagaattattaaaaaagttttgttgtaCATGTTTATGTGAGGATAGAAATCTGTTACAGTTATGTAGAATTAATAATGGTGTAAACAACTTGTATTGGTTGTTATCATTTGATTCTGAAGCGTTTCGGgAAGGCTTTCACAGGCATATTGCAAGTTTATACATATGCTGGGAGTGTAATGCTGTACTGACAAGGATGGTTGGCTTTAGAAGACAAGCTTGTGTCGCCCAGAGACAACTGACATGCTTAATTGATGGACAATATaaaactataaaaacgTTATCAAAATTAAGTCATACTTTGAATGAAAATTTTGATTACACATTCATTTATGAAGATGTAttagacaattttattatctgtggaaTACAAGAtattaaacatgaaaataacAGCGATTCTGACTTACCATTATCtgaatataacataaaaaaaatagataaagaaaaatatactttaaagtCTGAagcaaataatacaaaatcgATTGAAAAGAAACTAATTCAAAATTCAATCGAAAATGAATCTTTACGACATAgtaataagaaacaaaattcaataaggaatgaatttattgaaaataaaaataatttagtaacagaTATAAATGTGTCATTCAAATGTGACTCTTGTGATTTAGAGTTTAAAGTCGAAATTGATTTGGACAaacataatatagaaaaacatcaaaagAGAATAATAAAGAATCCAGGTTCGAAACCGAGACGTAATAAGACAATGACCGACAAACCGACAGCATTCGGTTTTTTGTGTATtgaatgcaataaatattttgaTACAAAGAAATCAAGATGGATCCACATACAACGTTCACATAGAGAAGGTTTTGAATGTTCTACTTGCGGGAAAAGATTTCCCTTCAGAAATAACCTAACAAGACATCAATTTACACATACAACACAAGCGCGAACAGAATGTATGATATGTCATAAACTTGTACGTGAGGACTTGGCACGAGCGCACTCTCGTACACACGAACCACGAGATATTTATACATGTGCGCTCTGCGTTAAGACATTCGCGAGTCGTGCTTCCTACGAACATCATCTAAAATACACGAAGACACATGCTGATGGTGATATACTCAAATACAAATGCTCGGTATGCGACAAAGGGTACAAGTCTAAAGGCGAACTCAGAGATCACATCAACTACCGTCACATGGGCAAGACTCAACACAAATGTCCACACTGCGGGAAGGCGCTGGCCACACGTCGCGGCGTGACTCGACACGTGCGCCGCGCACATCACGGCCTCAAAGAGAATCCAAAGGATAAAATGTGTCAACAGTGCGGAAAGGCGTTTAGAgataaaaaaggtttaaggGAACACGAATTTATACATACAGGGGAAAGACCTTTGTTCTGTGAGATATGCGGCTGTACATTCCGACAAAATGCATCTTTGTATACACATAGAAAGAGAGTACATAAGATATTGAATAAGAGAAGAAGTATAGAAATAATGGAAAGTGAGATACCTAACACATGA
- Protein Sequence
- MDDNSEELLKKFCCTCLCEDRNLLQLCRINNGVNNLYWLLSFDSEAFREGFHRHIASLYICWECNAVLTRMVGFRRQACVAQRQLTCLIDGQYKTIKTLSKLSHTLNENFDYTFIYEDVLDNFIICGIQDIKHENNSDSDLPLSEYNIKKIDKEKYTLKSEANNTKSIEKKLIQNSIENESLRHSNKKQNSIRNEFIENKNNLVTDINVSFKCDSCDLEFKVEIDLDKHNIEKHQKRIIKNPGSKPRRNKTMTDKPTAFGFLCIECNKYFDTKKSRWIHIQRSHREGFECSTCGKRFPFRNNLTRHQFTHTTQARTECMICHKLVREDLARAHSRTHEPRDIYTCALCVKTFASRASYEHHLKYTKTHADGDILKYKCSVCDKGYKSKGELRDHINYRHMGKTQHKCPHCGKALATRRGVTRHVRRAHHGLKENPKDKMCQQCGKAFRDKKGLREHEFIHTGERPLFCEICGCTFRQNASLYTHRKRVHKILNKRRSIEIMESEIPNT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -