Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01004541.1:818517-821669[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.00048 0.038 14.5 0.7 2 23 257 279 256 279 0.95

2 9 0.00046 0.037 14.6 5.0 1 23 297 319 297 319 0.98

3 9 6.5e-06 0.00052 20.4 0.9 5 23 328 346 326 346 0.97

4 9 1.5e-05 0.0012 19.3 4.8 1 23 352 374 352 374 0.98

5 9 2.1e-05 0.0016 18.8 1.0 1 23 379 401 379 401 0.98

6 9 1.6e-05 0.0013 19.2 2.8 1 23 407 429 407 429 0.98

7 9 0.029 2.3 8.9 3.1 2 23 436 457 435 457 0.97

8 9 2.3e-05 0.0018 18.7 5.8 1 23 463 485 463 485 0.99

9 9 2.5e-07 2e-05 24.9 3.7 1 23 491 514 491 514 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.00048	0.038	14.5	0.7	2	23	257	279	256	279	0.95
2	9	0.00046	0.037	14.6	5.0	1	23	297	319	297	319	0.98
3	9	6.5e-06	0.00052	20.4	0.9	5	23	328	346	326	346	0.97
4	9	1.5e-05	0.0012	19.3	4.8	1	23	352	374	352	374	0.98
5	9	2.1e-05	0.0016	18.8	1.0	1	23	379	401	379	401	0.98
6	9	1.6e-05	0.0013	19.2	2.8	1	23	407	429	407	429	0.98
7	9	0.029	2.3	8.9	3.1	2	23	436	457	435	457	0.97
8	9	2.3e-05	0.0018	18.7	5.8	1	23	463	485	463	485	0.99
9	9	2.5e-07	2e-05	24.9	3.7	1	23	491	514	491	514	0.98

Sequence Information

Coding Sequence: ATGGAAATGGAAAACCCTGATAGTTTACTACCCTATCCAAAATATTCGCATGTTTGTCGTATATGTCTAGGAAAAGGACAACATGCACTGAACCTTTTTTCTAAAAACGAAGAAGCAATAcggatactaaataaaatattgaaatgttttcaaataaaacttgaGTTCAAAAAACAGTTACCCTCATCAATTTGTGGGAAATGTATTGAAGATGTGACAATCGTCTGGAAGTTCCGTGAGAAAATCATTAATTCTGAAAAACAGTTCGCCCTGTACAGCGAAGTTTTAGAACCTAATCCAACTATAATACACAGTGATGATGAAGCTGTTGATGTGAAAGAAGAATTGAGATCAAACGAAGAAAGTGtacatttaacaaattacattGGTGTTACAGGAAAAGGACAACATGCACTGAACCTGTTTTCTAACAACGAAGAAGCAATAcggatactaaataaaatattgaaatgttttcaaataaaacttgaGTTCAAAAAGCAGTTACCCTCATCTATTTGTGGGAAATGTATTGAAGATGTGACAATCGTCTGGAAGTTCCGTGAGAAAATCATTAATTCTGAAAAACAGTTCGCCCTGTACAGAGAAGTTTTAGAACCTAATCCAACTATAATACACAGTGATGATGAAGCTGTTGATGTGAAAGAAGAACTGAGATCAAACGAAGAAAGTGtacatttaacaaattacattGGTGTTACAGAAGATCTTCGTACAATATTGAAGAGAACTCCGGAAAATCAATTGAAATGtacaaattgtaacaaaatacttaaaagtGAAGCttcattacaaaaacatacaatatcaATGCatctaaaaagaaaatatttgggCAGTGTGACCGGATTTGGAGCTAACCGACGCTATCACTGTACAAAATGTTCATATGCTAGCCCACACAGCCAGAGTTTGAATAATCACATGAGGACACACAACGGGGAACGTCCATATAATTGTGATTGTGGAAAAAGTTTTACACAATCATCCAGTCTGGCCGCACACAAAAAGACTCACAGCACTGACACATTCTACACATGCTCCGTGTGtggaaaacaatttaaacatgcatttagtttaaaaacacatttacatGTTCATGAAAATGCTCAATTCTCTTGTGATATATGCAATAAATTGCTTAAATCTAAACAATCATTGCAAGCGCACATGCAAAGACATTACAACATTCACAATTACAGCTGCGAAGACTGCGGTAGTACCTTTGTAACATGTTCAGAGTTATCAAACCATCGGAAAAAGCATGACattgagaaaaaaatagtttgtcATCTGTGTGATTACAAAACACATGCAAAGAAAAACTTGGTTATACATCTGAAAagGCATGCCGGTGAGAAGTCATATAAATGTGACCTGTGCAcattatcattttgtacacatGGTAACCTTCAGAGGCATAAAAGAGTCCATACTCGGGACAAACCATACACTTGTCCAACATGCAGCCAGCGCTTCACACACAGCACCAGTCTCAACAGACATATGCGGACCGTTCACGGCATTACTTACAAATGGTCTGATGTTAAATTGAAAGAATCAAGTAAATCGAAAGttgtatctaaaaataattctgaAATTcaggaaaaattaaataaaacaaatgataaatattctaagaattttatttga
Protein Sequence: MEMENPDSLLPYPKYSHVCRICLGKGQHALNLFSKNEEAIRILNKILKCFQIKLEFKKQLPSSICGKCIEDVTIVWKFREKIINSEKQFALYSEVLEPNPTIIHSDDEAVDVKEELRSNEESVHLTNYIGVTGKGQHALNLFSNNEEAIRILNKILKCFQIKLEFKKQLPSSICGKCIEDVTIVWKFREKIINSEKQFALYREVLEPNPTIIHSDDEAVDVKEELRSNEESVHLTNYIGVTEDLRTILKRTPENQLKCTNCNKILKSEASLQKHTISMHLKRKYLGSVTGFGANRRYHCTKCSYASPHSQSLNNHMRTHNGERPYNCDCGKSFTQSSSLAAHKKTHSTDTFYTCSVCGKQFKHAFSLKTHLHVHENAQFSCDICNKLLKSKQSLQAHMQRHYNIHNYSCEDCGSTFVTCSELSNHRKKHDIEKKIVCHLCDYKTHAKKNLVIHLKRHAGEKSYKCDLCTLSFCTHGNLQRHKRVHTRDKPYTCPTCSQRFTHSTSLNRHMRTVHGITYKWSDVKLKESSKSKVVSKNNSEIQEKLNKTNDKYSKNFI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -