Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01006317.1:71894-80725[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.036 2.9 8.6 0.4 1 23 351 373 351 373 0.96

2 10 0.06 4.8 7.9 0.6 2 23 400 422 399 422 0.95

3 10 6.9e-05 0.0055 17.2 0.4 1 23 445 467 445 467 0.98

4 10 0.00012 0.0097 16.4 0.6 1 23 471 494 471 494 0.97

5 10 4.4e-05 0.0035 17.8 0.6 1 23 499 522 499 522 0.96

6 10 0.041 3.2 8.5 2.4 1 20 528 547 528 551 0.81

7 10 1.7e-07 1.3e-05 25.4 2.4 1 23 558 581 558 581 0.98

8 10 0.0021 0.17 12.5 4.9 1 23 587 609 587 609 0.97

9 10 1.9e-06 0.00015 22.1 3.3 1 23 615 637 615 637 0.98

10 10 2.1e-05 0.0017 18.8 2.7 1 23 643 665 643 666 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.036	2.9	8.6	0.4	1	23	351	373	351	373	0.96
2	10	0.06	4.8	7.9	0.6	2	23	400	422	399	422	0.95
3	10	6.9e-05	0.0055	17.2	0.4	1	23	445	467	445	467	0.98
4	10	0.00012	0.0097	16.4	0.6	1	23	471	494	471	494	0.97
5	10	4.4e-05	0.0035	17.8	0.6	1	23	499	522	499	522	0.96
6	10	0.041	3.2	8.5	2.4	1	20	528	547	528	551	0.81
7	10	1.7e-07	1.3e-05	25.4	2.4	1	23	558	581	558	581	0.98
8	10	0.0021	0.17	12.5	4.9	1	23	587	609	587	609	0.97
9	10	1.9e-06	0.00015	22.1	3.3	1	23	615	637	615	637	0.98
10	10	2.1e-05	0.0017	18.8	2.7	1	23	643	665	643	666	0.96

Sequence Information

Coding Sequence: atggAAACTAGTActgaaacttttattttcttagctAGATGTAAATGTTGTCTGCAAGAAGatgatttacaaaatttatggGATTCGTACGTATTTGAAGGTGAAACTGAGATTTATGGAGAAATGTTGGCTGAATGTTTTTCTCTAGcgCCACAATCAGAAGAAAATTTACAATGCATAGAAATGATATGTACGTCGTGTATAAAGAGGTTAAGAGACGCTCTTACCTTTAGAAGAGAAGTAATAGCGAGCACACAAGTATTCCACGAACATTTAGAtaaaatgaTGCTACCGACAAGTATAAATGGAAATGaagttaaattagaaaatgaatcggaatatcaaaatattgaatatttagaTACAGAATGTATTAAAGAGCAGCGTGATGCAGAAGATGTTTCAGTTGAAGAATCGCCGGTATTagacaaagaaattaaagataCAAGAAAATGGCCTAAAAAGTTGCCAAAAGAATATCGTAATAAAACCTACAAGCAGTACAGTGTTGCCGCACTCAAAATGGCTATAGACTCTGTATTGAGCGATAGAATGTCTATGGCTGAAGCTTCTTTGAAGTATGGTGTCCCTCGGAAGACTATAACagcaaaaatacatttagcaAGGAATAAAACAGAGGAAAAAGGGGAACATCAAGATCTGTTTGCGGAATACTCTTACAATGGCAATAAGGAAGTTTTCATGGATATAATTAtggattgttttaatatttacTTATCCACAAATACAACTCTCAGTCCTCTGATCTGCTCGTCATGTGTACAACAACTTAGAAACGCTAATAATTTCCGTTTGCTGATTGTAAACTCGGAACAACAACTTTTAAATGCAATCACAGATAAGGAAACTGTGTTCATAAAtgATAAAGTAGTATTACCGAAAATGATAGAGACACTTCTACAGACAGATGAGacacctataaaaaaaagaaaactcttTATTTCAGCTAAAATGGGACACATCCTTAACGCGTCGTTGATATTAGAAAATAGTAACGCGAtaccatttaaaaatagaaatagtaCCGGTTACCCTTGTTATTATTGTATCAAATTCTTCGATACTGTCGATAAACTACGCGAACATGTACTGGagcataaaaaaaaagaaataaaaaaaacactttcgaCCTACGGCGCGGAATATTTCGTAGTATACGTTGACGTTActgatttaaaatgtacattgtGTAATGAAAAAATGCCGAATTTGAACGAATTAAAATcacatttgattaaaaaacatgagaaaaaatattataatgaatacACCGATCGGGTTATACCATTTAGGTTATCAGAGGATAATATATTCGAGTGCCAAGTTTGCGGTTTTAAATTCGAAACGTTCGGTTCTATCGAGCGACATATGAACGTGCATTTTAGAAATTATGTCTGTCAAGATTGCGGTTCCGGCTTCATAACTAAATATAGACTCCGTGTTCATACAAAATCATTACACACCGAAGGCAATTACCCTTGTGAGACATGTAAAAAAGTATACACGACAGCgcagaaattaaaaaaccacGTCTCATCAGTacatatgaatttaaaaagattCAAGTGTCCGAAGTGTCCGGAGAGATTCTCAGAGTATTTCAAAAGGCACAAACATTTAGTTGATGTACACGGTATGACACCATTGAAATACAAATGCAATGTTTGTGATAAATCATTTGATAGAAGATATTCTTTATCTCGACATTTAAAACGTGATCATTTGGAAGAAAGAGATTTTCATTGTGATATTTGTACATATACTTGCTTCACGAATAATGAATTAAGAGTTCATATGATTAAACATAACGGGGAGAGAATTCATGAATGTACCGTTTGTAAGAAATCTTATGCTAGAAAAAAGACATTGAAAGAACATATGAGAATACATAATAATGATAGGAGATTTACTTGTGCTGTCTGCGGACAGgcttttgtacaaaaatgtagtttaaaaGGACATATTAAGACACATCATTTAGAATATAGTATGCAGTGA
Protein Sequence: METSTETFIFLARCKCCLQEDDLQNLWDSYVFEGETEIYGEMLAECFSLAPQSEENLQCIEMICTSCIKRLRDALTFRREVIASTQVFHEHLDKMMLPTSINGNEVKLENESEYQNIEYLDTECIKEQRDAEDVSVEESPVLDKEIKDTRKWPKKLPKEYRNKTYKQYSVAALKMAIDSVLSDRMSMAEASLKYGVPRKTITAKIHLARNKTEEKGEHQDLFAEYSYNGNKEVFMDIIMDCFNIYLSTNTTLSPLICSSCVQQLRNANNFRLLIVNSEQQLLNAITDKETVFINDKVVLPKMIETLLQTDETPIKKRKLFISAKMGHILNASLILENSNAIPFKNRNSTGYPCYYCIKFFDTVDKLREHVLEHKKKEIKKTLSTYGAEYFVVYVDVTDLKCTLCNEKMPNLNELKSHLIKKHEKKYYNEYTDRVIPFRLSEDNIFECQVCGFKFETFGSIERHMNVHFRNYVCQDCGSGFITKYRLRVHTKSLHTEGNYPCETCKKVYTTAQKLKNHVSSVHMNLKRFKCPKCPERFSEYFKRHKHLVDVHGMTPLKYKCNVCDKSFDRRYSLSRHLKRDHLEERDFHCDICTYTCFTNNELRVHMIKHNGERIHECTVCKKSYARKKTLKEHMRIHNNDRRFTCAVCGQAFVQKCSLKGHIKTHHLEYSMQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01140150;
90% Identity: iTF_01140150;
80% Identity: iTF_01140150;