Pdar004248.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- zfy1_1
- Assembly
- GCA_013186455.1
- Location
- QDHC01001933.1:301721-304337[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0044 0.35 11.5 1.7 1 23 53 75 53 75 0.98 2 13 0.0086 0.68 10.6 1.5 2 23 103 125 102 125 0.96 3 13 6.2e-05 0.005 17.3 1.5 1 23 148 170 148 170 0.98 4 13 0.023 1.8 9.3 0.1 2 23 175 196 175 196 0.94 5 13 2.8e-05 0.0022 18.4 3.1 1 23 200 223 200 224 0.97 6 13 0.0035 0.28 11.8 1.5 2 23 265 286 264 286 0.97 7 13 1.4 1.2e+02 3.6 0.1 2 23 314 336 313 336 0.92 8 13 0.021 1.6 9.4 3.2 2 23 360 381 359 381 0.96 9 13 8.7e-06 0.0007 20.0 0.2 2 23 386 407 385 407 0.97 10 13 0.00014 0.011 16.2 0.8 2 23 413 435 412 435 0.91 11 13 0.0065 0.52 11.0 1.3 1 23 473 496 473 496 0.95 12 13 4.2e-06 0.00033 21.0 2.7 1 23 500 522 500 522 0.99 13 13 0.0013 0.11 13.1 0.2 1 23 528 551 528 551 0.97
Sequence Information
- Coding Sequence
- ATGATAACATTGAATTTTGCCTTCCCAGGAAACCAAACGGGCGGTAGAAAAGTTGCATGTCCCGGGTTCTGGGAGATGACAATATCACAGCGAAAAAATGCAGCGACGCTTCTAGAAAACACGACGATGACACCTTTCGTCTACTGGAGAAATCATTTTCAATGTTTCTTCTGCCGACAGCAATATTCTAATGCCAGAAGCCTTCTAGAACATACTATAACCCATGAAATCCCAAACAGATACACCTTACTAAAAGAATTGTTACCTGGAGGAAAGGGTTCACTTAAAGTCGACATATCCAACCTCAAATGCAAAATATGCGATCGGAACTGTACagatattaatcaaataactGAACATCTGACTAcagaacataatattaatttcatggAATCTGGTAACGGTCTAGAGGCTTACAATTTGACACCGAAAGAGGATCAATACGCGTGCCACGTGTGtgataaattgtttcaaaCTTTCATAATGTTAAATCGACATATGAACGTCCATTTTAATAATGCAGTCTGCGATACTTGCGGCGCCGGCTTTGCTACATATAGACGTCTGTTGAAGCACAAAGTAATCCATTCCAGTGGATATAAATGTACTAAATGCAACAAAGTTTATACAACTAATGCTATTTTGAAGCGTCATATACAAAAGATTCATCATGGCGCGGTCCGCGCTTTGCCCACCGGAATATGGCATATGACTGCACCAGAAAGAGAGAATGCGGCAACCTTCCTTCATCTAACAACAGCTAGACCATTCACACATATGGGTTCAACGTTGAAATGTTTctattgcaaaaaatattattcagaattaaaagatttactcGAACACACTTTGACACATACGGTTGAAGATAAAGATGcgatattaaagaaatatataatgaATGGGAAACGTATGGTTTTAGTTGATATATCACTACTTAAATGCAGACTTTGTTGGCTACAATACTCTGATATAAATTCTATAAAGATACATTTAGAAAATGTTCATAATAAGACGTTTTTATTAGGTGGTACTGGACTGACTGAGTTTAATCTATCTATTGAAAAAGGTGTTCTAACTTGTCATATTTGCaagaataaatataacgaATTTGTACAATTGAAGACTCATATGTATTCTCACACAGGGAGGGTAGTTTGCGAAGTTTGTGGTACCGCCTTCATTAACCAGTATCATTTATCCCTACATTTAGAAACTCATATGAATAAAACGCTGTCTTGTAAGTTTTGTGATAAAGTCTTTTCTAAATACGGCCAACTGAAGTACCATACGGCTTTAGTACATAAAGGAAGGAGTAGAATAAGAAAGAAGAGATGCGAGCATTGCTCTGATACATTCAAAGAGCatcatactaaaatgttgcatttGAAAATCGTCCATGGTATTGTAAGGTCGTTTCCCTGTTCGATTTGTAAATCTAACTTTGACACCCGACGTGGTCTAACGGAGCATACGACTAAATATCATACAGAAAAgtataaatgtgaaatatgCTCTAAATGCTTTGAAATAGCGTCCAAATTGAAATATCACATGCGGATACATACTGGTGATAAGGAATTCGTCTGCGCATATTGTGATAACGGGTATATGTTAAAAGCATCTCTAATTAAACACATACGACGACTCCACGGTTTTCATTATTCCGTGCCAAAGATTATGTAA
- Protein Sequence
- MITLNFAFPGNQTGGRKVACPGFWEMTISQRKNAATLLENTTMTPFVYWRNHFQCFFCRQQYSNARSLLEHTITHEIPNRYTLLKELLPGGKGSLKVDISNLKCKICDRNCTDINQITEHLTTEHNINFMESGNGLEAYNLTPKEDQYACHVCDKLFQTFIMLNRHMNVHFNNAVCDTCGAGFATYRRLLKHKVIHSSGYKCTKCNKVYTTNAILKRHIQKIHHGAVRALPTGIWHMTAPERENAATFLHLTTARPFTHMGSTLKCFYCKKYYSELKDLLEHTLTHTVEDKDAILKKYIMNGKRMVLVDISLLKCRLCWLQYSDINSIKIHLENVHNKTFLLGGTGLTEFNLSIEKGVLTCHICKNKYNEFVQLKTHMYSHTGRVVCEVCGTAFINQYHLSLHLETHMNKTLSCKFCDKVFSKYGQLKYHTALVHKGRSRIRKKRCEHCSDTFKEHHTKMLHLKIVHGIVRSFPCSICKSNFDTRRGLTEHTTKYHTEKYKCEICSKCFEIASKLKYHMRIHTGDKEFVCAYCDNGYMLKASLIKHIRRLHGFHYSVPKIM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -