Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01001575.1:16244-18995[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00017 0.013 16.0 0.4 1 23 274 297 274 297 0.96

2 12 0.021 1.7 9.3 1.0 1 23 315 337 315 337 0.96

3 12 1.5e-05 0.0012 19.3 1.3 2 23 343 364 342 364 0.96

4 12 2.8e-06 0.00022 21.6 0.3 1 23 368 391 368 391 0.97

5 12 1.2 96 3.8 0.1 5 19 398 412 396 412 0.95

6 12 2e-05 0.0016 18.9 0.5 2 23 495 516 494 516 0.95

7 12 0.13 11 6.8 0.3 2 23 536 558 535 558 0.95

8 12 1.1e-06 8.9e-05 22.8 4.2 1 23 564 586 564 586 0.98

9 12 3.5e-05 0.0028 18.1 3.3 1 23 591 613 591 613 0.98

10 12 6.8e-05 0.0054 17.2 2.8 2 23 620 642 619 642 0.95

11 12 5 4e+02 1.9 0.9 1 19 650 668 650 669 0.83

12 12 0.012 0.92 10.2 1.7 3 19 682 698 680 703 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00017	0.013	16.0	0.4	1	23	274	297	274	297	0.96
2	12	0.021	1.7	9.3	1.0	1	23	315	337	315	337	0.96
3	12	1.5e-05	0.0012	19.3	1.3	2	23	343	364	342	364	0.96
4	12	2.8e-06	0.00022	21.6	0.3	1	23	368	391	368	391	0.97
5	12	1.2	96	3.8	0.1	5	19	398	412	396	412	0.95
6	12	2e-05	0.0016	18.9	0.5	2	23	495	516	494	516	0.95
7	12	0.13	11	6.8	0.3	2	23	536	558	535	558	0.95
8	12	1.1e-06	8.9e-05	22.8	4.2	1	23	564	586	564	586	0.98
9	12	3.5e-05	0.0028	18.1	3.3	1	23	591	613	591	613	0.98
10	12	6.8e-05	0.0054	17.2	2.8	2	23	620	642	619	642	0.95
11	12	5	4e+02	1.9	0.9	1	19	650	668	650	669	0.83
12	12	0.012	0.92	10.2	1.7	3	19	682	698	680	703	0.93

Sequence Information

Coding Sequence: ATGGAGATTGTATACCCCATGTTATTGATACCAAAGGAGTGTGTAAAGCTGCACCAGAACGCTGCACTGCTGGATGACATCATATTAGACATCACCATCACATCACCCAACACCAAAGGTGAAGCTATATGCATATACACAGGTTGCTGCCACATCAAGTTCACAGACAAAGAATACAATATTCCGAACAAGGCCACACAAGGTCTAGAGTTCATCAACATTGAAGATACAAAATCAGTTCAAGATGCTGTCCAATCTACATATCCATCAAATGTATGGATAGATCCAGCCCGGAGTCCATACATATACAACAATTATACAGCGAACGGTCTCCCACCACAACATTTTGTATACAACCATCAAGCCAACCATGTAACAGTCCAGCAgcacaatacatacataaccCAAAATGTGTACAGTTATCCAGAAACCATACATTATGCATCATCAGAGGAATATGGCTTTGAGACATTGATAAATCAAAACGCAACCGATTTGACCCATTTGTTTGATGGTGAAGAACTAGAGGAATGTGATTTGCTGCTTGAAGAGATAACATGTGAGAAAGAGCCTCCAATTATAACAGAGTCAATAGACTTGGAACTTCAAAGTGACAATAATGCACTCAAGCAGCTCATGTCAAATGGTATCCAAATACCATCAAAGCCACAGAAGACAATAATATTCATGGGTCCAGAGTGTGGACAGACTATACAGAAGATTGCAGTCAATGATCCATCTTTGATGTGCACCTCGGATGACaatatatcttcaaatatTGATATTGaaaacaacAATAGCAATAACAAACATAAGAAATATCAGTGTGAAAAATGTGAGAAAATATTTGACCAAATAACAGCATTCAAACAACACATGGTCGTATCACACGAGCGGAATAAAACACGTCGTGGATCTGAACGTGATAGCGAAGTAAAGGTATTCGTGTGTGCCCAGTGCGGGAAGAAATTGAAGTCGTATGAGAAGTTCGACCAGCACAGCCGCGGCCACGGCGACCCGGACTTAGAATGCGAAAGGTGCAACAAAGTTTTCGCATCTAAATTTAGTCTTCGCACTCATCGTAAGATACACACGCGAAAATATCCATGTCCGAATTGTACAAAATCATTCAACAAACTCGCAGAATTAAGAACACATATTAACAAGGTACATCCGAGTCAAAACTCTGATGATTGCAATTTCACAACAGATAACCAAACCGAGTTGCAAAAGCACGATAATAGTGACATTTGGCGGGAAAATACCGAAACATCGGAATCGTTTTTTCTCGACGATGGTGTCTCTGATATAGATAATGATTCGGAATCCGTAACTAATTACGAGTTACCGATGGATGGCGATGAAAATGACTCGATTGAAATCGATATAAAAAATGCTAATGATGTTCTTGCTAAGGTGATGtccaataaagtttttttactcAATGCGAGGAAGGGGAGACAAAACAAGAGATTTAAAAAGAGTTGTGATGTTTGTTCAAAAACCTTCACCCGAATTGGAGACCTGAAAAGACACCTCATCGAGCACGTCATCAAGAGCACCCTGGCAAAGAACCCGGTCAGCAAAGACGGCACACTGAATATACAATGCGCGGTGTGTCAGGTGCAATCCTTCACTAAGGTAGACAAATACAAGGCTCATTTGCGCGAGCATGCAAAATTAACTTTGTACCAGTGCACATTCTGTAACAAATCGTTCAGTGACTCCAGCAACTTTTCGAAACACAAGAAAATTCACGGCTCTGCGTACTACCAGTGCGACCTCTGTCTTAGAAAGTTTAATTCTAAAAAGATGCTCACAAAACACATGCAGTATCACATCGAGAACACGCCATTACCTTGTCGCTATTGTGACAAAACATTTCATTTCGAATCGATGTTAAATAAACACATCAAGAGCACACACAACAAGGCAGCGGCGACGCGATTCCGCTGCAATTTTTGTCAGGCTTATTATAAgactttaaaagaaaaatgggACCACGAatggtacattcataatattaggaAAGTAAAAATTGATTGTGGCATTTGCAGCCGTAAGTTCAGGAAGTACGCCGAACTAAAACGTCACTGCTTAGATAACCAcgatttggaaataccgcctgCGAAGATGTTTTTGCAGCAACAACAAGAAGATAATTATACTATTTGA
Protein Sequence: MEIVYPMLLIPKECVKLHQNAALLDDIILDITITSPNTKGEAICIYTGCCHIKFTDKEYNIPNKATQGLEFINIEDTKSVQDAVQSTYPSNVWIDPARSPYIYNNYTANGLPPQHFVYNHQANHVTVQQHNTYITQNVYSYPETIHYASSEEYGFETLINQNATDLTHLFDGEELEECDLLLEEITCEKEPPIITESIDLELQSDNNALKQLMSNGIQIPSKPQKTIIFMGPECGQTIQKIAVNDPSLMCTSDDNISSNIDIENNNSNNKHKKYQCEKCEKIFDQITAFKQHMVVSHERNKTRRGSERDSEVKVFVCAQCGKKLKSYEKFDQHSRGHGDPDLECERCNKVFASKFSLRTHRKIHTRKYPCPNCTKSFNKLAELRTHINKVHPSQNSDDCNFTTDNQTELQKHDNSDIWRENTETSESFFLDDGVSDIDNDSESVTNYELPMDGDENDSIEIDIKNANDVLAKVMSNKVFLLNARKGRQNKRFKKSCDVCSKTFTRIGDLKRHLIEHVIKSTLAKNPVSKDGTLNIQCAVCQVQSFTKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGSAYYQCDLCLRKFNSKKMLTKHMQYHIENTPLPCRYCDKTFHFESMLNKHIKSTHNKAAATRFRCNFCQAYYKTLKEKWDHEWYIHNIRKVKIDCGICSRKFRKYAELKRHCLDNHDLEIPPAKMFLQQQQEDNYTI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147596;
90% Identity: iTF_01149014;
80% Identity: -