Pdar014250.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- ZFY
- Assembly
- GCA_013186455.1
- Location
- QDHC01005516.1:23592-25025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.00013 0.011 16.3 0.0 2 23 144 165 143 165 0.97 2 11 9.5e-05 0.0076 16.7 2.1 1 23 171 194 171 194 0.96 3 11 2.3e-05 0.0018 18.7 0.9 1 23 201 223 201 223 0.98 4 11 6.4e-05 0.0051 17.3 1.4 1 23 229 251 229 251 0.99 5 11 3.8e-06 0.0003 21.1 0.5 1 23 257 279 257 279 0.98 6 11 0.0024 0.19 12.3 5.7 1 23 285 307 285 307 0.97 7 11 4e-05 0.0032 17.9 0.2 3 23 315 336 314 336 0.97 8 11 0.00042 0.033 14.7 0.9 2 23 342 360 341 360 0.81 9 11 0.0037 0.3 11.7 0.6 1 23 366 389 366 389 0.95 10 11 0.0048 0.38 11.4 0.5 1 23 395 420 395 420 0.95 11 11 1.3e-05 0.001 19.5 1.4 1 23 426 449 426 449 0.97
Sequence Information
- Coding Sequence
- atggatttaAATCTGTGTAGAGTGTGTTTAGATAAATCCGCAACCATATCTATGTTCAGTAAAGAAAATGATATTCAATACAGTGCACAAATAATGCGGTGCGTCAATATAAACATTAGCGAAGAAGACGGCTTGCCGACGATGTTGTGCTCCAACTGTGTCGCCGAGCTCGCCGTATCCTACCAGTTCGTGGAGAAATGCGAAGCCTCCGACAAAACGTTACGCTCATTATCCaatcactatttcagcgataTACCACCAAAAATCAAAGTAGAAGTTAAACTTGAAGACGATAAATTCGATCATGACTGTGACTCGTCCGATGCAGCTTCTGAATATTTGCAGGATATTgagaaaaagaaaggtaaaagAAAAGAACGAAAGAgacagattaaaaagaaagtgCGAAGAACCAAAGCTGCTCCCATACAGTGTGTTATTTGTGGTCTGCTCGTAGTAAGCCCGTCAGCCCTGCAGAACCATATGCGCATCCACACCGGGGAGAAACCTTTCAATTGCTCATTTTGCGATACCAAGTTTCGCACGAAGGGCGCAATGAAGCGGCACGTTGACACCTACCACTGCGAGCGCGAAAGAAAGTTTACCTGCGAAACATGCGGCAACAGCTTCTTTAGGAAAAATGACATCATCACTCACATGAGAGTGCACTCCGGGGAGCGACCGTACGTCTGCCTGTTCTGCTCACAGCGCTTCCGGCAGGTGGCGTCCTTGATACGACACAAGCGCACGCACACGGGTGAGAAACCTTATTCTTGTCCAATATGTGACAAGAAATTTGGTGACAAAAATCTTGTCCGCAAACATCAAAGCGTGCACAGCGAGGAGAGGAACTTCAGCTGCCATCTGTGCAACAAATGCATGAAGTCTAAGACGGCACTCAATAACCACCTCAACTTACACACAAATGAGAAGCAGAACATTTGTAGTTTCTGTGGCATGGCCTTCGCCATGAAAGGCAACTTGCAGACGCACGTACGACGAGTGCACTCGGAGAAGTCGGGTCAGTGTAATATCTGCTTAAAGACATTTTCGAACCTTGAGGTACACATGCGTAAGCACACAGGTGAAAAGCCATTCACGTGCGGCTTGTGCAACGCGGCATTTGGAGTGAAGCGCAGTCTCGCTCACCACATCATGTTCAAGCATGAGAATGCAGACAAGTTCAAGTGTTCCCTAGGGGAGTGCACCAAGACTTTCCCCACGGCCACCATGCTGGAGTTCCACCTGTTGAAGCAGCACACCAACCACACTCCTTACATCTGCCAGTACTGTTCGCGCGGCTTCTTCCGCACCAGCGACCTCTCCAGACATCTCAGAGTTAGCCATACTGACACACAAATTAAGCCAATATCTTTAAAACCTTTAATTGATAAGCCATGTACAATGCAATACTCAGTTccaaacataatataa
- Protein Sequence
- MDLNLCRVCLDKSATISMFSKENDIQYSAQIMRCVNINISEEDGLPTMLCSNCVAELAVSYQFVEKCEASDKTLRSLSNHYFSDIPPKIKVEVKLEDDKFDHDCDSSDAASEYLQDIEKKKGKRKERKRQIKKKVRRTKAAPIQCVICGLLVVSPSALQNHMRIHTGEKPFNCSFCDTKFRTKGAMKRHVDTYHCERERKFTCETCGNSFFRKNDIITHMRVHSGERPYVCLFCSQRFRQVASLIRHKRTHTGEKPYSCPICDKKFGDKNLVRKHQSVHSEERNFSCHLCNKCMKSKTALNNHLNLHTNEKQNICSFCGMAFAMKGNLQTHVRRVHSEKSGQCNICLKTFSNLEVHMRKHTGEKPFTCGLCNAAFGVKRSLAHHIMFKHENADKFKCSLGECTKTFPTATMLEFHLLKQHTNHTPYICQYCSRGFFRTSDLSRHLRVSHTDTQIKPISLKPLIDKPCTMQYSVPNII
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01143281;
- 90% Identity
- -
- 80% Identity
- -