Pdar000064.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio dardanus
Gene Symbol
-
Assembly
GCA_013186455.1
Location
QDHC01004916.1:482082-493363[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.015 1.2 9.8 0.1 3 20 178 195 177 199 0.96
2 13 0.00038 0.03 14.8 0.7 3 23 240 260 240 260 0.98
3 13 1.5 1.2e+02 3.5 3.3 1 21 265 285 265 286 0.93
4 13 1.4 1.1e+02 3.6 0.1 2 23 336 358 336 358 0.87
5 13 0.0013 0.1 13.2 0.1 2 20 364 382 363 384 0.91
6 13 0.0001 0.0079 16.7 2.1 1 23 392 415 392 415 0.97
7 13 0.00029 0.023 15.2 3.7 1 23 434 456 434 456 0.99
8 13 5.8e-07 4.6e-05 23.7 5.2 1 23 462 484 462 484 0.99
9 13 0.16 13 6.6 7.2 3 23 496 516 494 516 0.96
10 13 2.3e-07 1.8e-05 25.0 0.8 1 23 522 544 522 544 0.99
11 13 1.3e-07 1.1e-05 25.7 0.5 1 23 550 572 550 572 0.98
12 13 6.4e-08 5.1e-06 26.7 1.5 1 23 578 600 578 600 0.99
13 13 0.0033 0.26 11.9 0.2 1 23 606 630 606 630 0.94

Sequence Information

Coding Sequence
ATGACAATGAGTGTTGATTTCGGAGATAGATGTCGAACATGTTTAGGAgaaaagaatgttttgtacCCGATTATTGGAACAAGCTTGGAAACAACCCGTAATGGCACAATCTCCCTTGCGGTCGCAATAACATCTGTAACCGGACTGAAGattgaCAATGACAATGCATTTTCTGGTAAGATCTGTGAAGGCTGTAAAGCCGATGCAGCTACAGCattctcatttaaaaaaatggcaaTTCAGTCAGATATTTATCTCAATGAGATGTTACAGAAACAAGAACAGTGTAAAAATGAAGAAAAGgatgATCATTCCAAGTTAAAAGATAATGTTAAGGTAGAAATGGAGGTATCGGATGATGCTTTTGATGAAGTTTCCGGTACCCTTGATAATGCTAgagAAGATTATTCTGGTTTGACAAAAATAGAACCGATTGAGATTTACAATGTCAGTATTGAAACTGAAACATTAGAAACACCAGAAGATGATAGTTGCGTAGAAGttgCAGATATGAATAAACAGCAGGCTTTCTGTCCTCTCTGCAATGTCGGTTACAATGattccggaggtctcacgaaGCACATGTGGGAGGTGCACACCGACATCATGGGACCCAagaagagaggaagaccgaaaAAGATCGATACAGAAtttatattaaaaaatctattggaTAGAGGAATTTTGAAACCTAAAAATCAAGAGAAGATGATTGGCTGTTCATTTTGTGTGAAAAATTTTGTGACCAAAGATGAATTAGAACAACACATTAGCAAACATAAAGataaaatatattcatgtgATGTTTGCAAGAAGAATTATTTGAAGAAGAAATATTACGAAAATCATTTATGtgagaaaaataaatctcAAGAGGACGGTGACTCTaGTGAAATGGCTGTTGATTCAAATGATGCGGAAGAAGTAAAAGACAAATTTCTTCATATAACATCTTTTCCAGAATTGTGTCTTCAGAGTATTGATAAGGAATCCGTGTTATGGAGACAGTGCAAGTACTGCAGTCTGCTGGTGTTCACACCTGAGGAGTTGGTCTCTCATGTCGATCTTTTACATCCAAACAGTTCACTCAAATGTCCACAATGCAATaaggTGTTCACGACGTTGCCATCTGCGCGTGCGCATCGTGCGCGTTGCGCGAATGTGGAGCGCACGTTCACTTGCTCCTCGTGCCCTCAACGTTTCACCCGAGAGGCTCTCCTCAACAAGCATATACTATCATGCCACAAGGGTCAGCTGGTCTCCACATTATTCCTATCCACTGATGTATCCAATAAGACGTATCAGTGTGATTTCTGCAAGAAGAACTTCTTGAAGAAAGTCTCGCTGACGAAGCATATGAGAAATCACTCCGTCAATAAGGACTACAAGTGCAACTACTGCAGTAAAACTTTCCACAGAAACGACAACctgaaGTCACATTTGCGAGTGCACGGTATCGGTACTAAACCGACGAAAAGCTGCCTCTGCTTGTTCTGCGGCCACAACTTCTCATGCTCGTCCAACTACATCGTGCACATGCGCCGGCACACCGGTGACAAACCCTATAAATGTGACTTGTGCGAGAaagcttTCCCTCGCTCATCGGATCTTCAGAGTCACAGGAGATCGCACACTGGCGAAAAACCATACGATTGTCCTTTATGTCAAAAAGCGTTCTCCCGAAGCAACAAACTGGCGCGTCATATGCGCGTACACACCGGGGCTAGACCGTACAAGTGTACGTACTGCGGCAAAGGTTTCTCCCAGAGCAACGATCTCAACCTGCACCTGCGCAGGCACACGGGCGACAAGCCTTACGTATGCGAGGTCTGTGGTGACAGGTTCATACAGGGAACAATGCTGCAGACACACAGACGTACTAACGGCCACTTCCCGCCGGACCAACTAGTTCTACCCAATATCACCACACTGGCTATTACACAGGCTACCCAGGGCAGTACCCTGGCCAACACACAGTCTAACCAAGCCATTACACCGCCAACCCAAGCCATTACACAGCCAACCCAGGGCAGTAACCTGGCCATTACCCAGGCTAATGAACCTAGTAATCTGGCCATTACAGATGCTAACCAACCCAGTAACTCGGCTATTACACATGCTAGCCAGGGCAATAACCTAGCCATTACACAGGGTAACCAACCCAGTAACTTGGCCATTACACAAGGTAACCAGCccaataactttgccattacACAGGGTAACCAGGCCAGAAACCTGGCCATTACACAGGCTAACCAGGCCAGTAACCTGGCCATCTTACATGCTAACAAAGTCAATAAGCTGGCCATTATACATGCTAACCAAGCCAGTAAATTATCCCTGTCACAGTCGAACCAAGCCAGTAACCTAGCAATAACACATGCTAACCAAGCCAGTAATTTGGCAATTACACATGCTAACCAAGCCAGTAAACTGGCCATTACACAAGCTAATCTAGCCAGTAAATTGTCCAAAGTCAGTGACCTGGCAATTCCCCAGCCCACACAAGCCAGTAAGCTGGCAATTGCCCAGCCCGCCCCGGTCAGTACTCTCGGCGTTAGACATGCAACACAGGCCTATAACGTTGCCGTTTCACAGGTCAATACTCTAACAAATAGCCAAATCGATAGTCTGTTCAGCGCCCACCTCAGTACACAGTTCGGTACTTCTAACTTCAGATAA
Protein Sequence
MTMSVDFGDRCRTCLGEKNVLYPIIGTSLETTRNGTISLAVAITSVTGLKIDNDNAFSGKICEGCKADAATAFSFKKMAIQSDIYLNEMLQKQEQCKNEEKDDHSKLKDNVKVEMEVSDDAFDEVSGTLDNAREDYSGLTKIEPIEIYNVSIETETLETPEDDSCVEVADMNKQQAFCPLCNVGYNDSGGLTKHMWEVHTDIMGPKKRGRPKKIDTEFILKNLLDRGILKPKNQEKMIGCSFCVKNFVTKDELEQHISKHKDKIYSCDVCKKNYLKKKYYENHLCEKNKSQEDGDSSEMAVDSNDAEEVKDKFLHITSFPELCLQSIDKESVLWRQCKYCSLLVFTPEELVSHVDLLHPNSSLKCPQCNKVFTTLPSARAHRARCANVERTFTCSSCPQRFTREALLNKHILSCHKGQLVSTLFLSTDVSNKTYQCDFCKKNFLKKVSLTKHMRNHSVNKDYKCNYCSKTFHRNDNLKSHLRVHGIGTKPTKSCLCLFCGHNFSCSSNYIVHMRRHTGDKPYKCDLCEKAFPRSSDLQSHRRSHTGEKPYDCPLCQKAFSRSNKLARHMRVHTGARPYKCTYCGKGFSQSNDLNLHLRRHTGDKPYVCEVCGDRFIQGTMLQTHRRTNGHFPPDQLVLPNITTLAITQATQGSTLANTQSNQAITPPTQAITQPTQGSNLAITQANEPSNLAITDANQPSNSAITHASQGNNLAITQGNQPSNLAITQGNQPNNFAITQGNQARNLAITQANQASNLAILHANKVNKLAIIHANQASKLSLSQSNQASNLAITHANQASNLAITHANQASKLAITQANLASKLSKVSDLAIPQPTQASKLAIAQPAPVSTLGVRHATQAYNVAVSQVNTLTNSQIDSLFSAHLSTQFGTSNFR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-