Pdar004244.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- -
- Assembly
- GCA_013186455.1
- Location
- QDHC01001933.1:272400-294163[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 27 1.7 1.4e+02 3.3 0.3 1 23 265 287 265 287 0.87 2 27 2.6 2.1e+02 2.8 0.4 3 23 314 336 313 336 0.87 3 27 0.014 1.1 9.9 0.4 1 23 357 379 357 379 0.97 4 27 9.1e-05 0.0073 16.8 4.3 1 23 383 405 383 405 0.98 5 27 0.23 18 6.1 0.2 1 23 410 433 410 433 0.92 6 27 0.00086 0.069 13.7 1.5 1 23 439 462 439 462 0.96 7 27 7 5.6e+02 1.4 2.5 1 11 468 478 468 484 0.85 8 27 0.4 32 5.3 0.1 1 23 489 511 489 511 0.96 9 27 0.34 27 5.6 0.3 2 23 535 557 534 557 0.91 10 27 0.79 63 4.4 2.3 1 21 579 599 579 601 0.94 11 27 0.0047 0.38 11.4 2.6 1 23 605 627 605 627 0.95 12 27 0.00058 0.046 14.3 1.9 2 23 635 656 634 656 0.96 13 27 0.0018 0.14 12.7 2.3 1 23 662 685 662 685 0.97 14 27 4.4 3.5e+02 2.1 6.0 1 23 691 714 691 714 0.93 15 27 0.002 0.16 12.6 0.1 1 23 720 742 720 742 0.96 16 27 2.7e-05 0.0021 18.5 0.8 1 23 748 770 748 770 0.99 17 27 1.9 1.5e+02 3.2 2.1 1 17 776 792 776 793 0.88 18 27 1.1 84 4.0 1.2 1 23 854 877 854 877 0.94 19 27 0.0016 0.12 12.9 0.4 2 23 900 921 899 921 0.97 20 27 0.0076 0.6 10.8 4.4 1 23 943 965 943 965 0.97 21 27 0.00013 0.01 16.3 0.6 1 23 969 991 969 991 0.98 22 27 0.00048 0.038 14.5 0.2 1 23 996 1019 996 1019 0.96 23 27 7.2e-05 0.0058 17.1 2.1 1 23 1025 1048 1025 1048 0.98 24 27 0.063 5 7.9 1.2 1 23 1055 1078 1055 1078 0.95 25 27 0.057 4.6 8.0 4.1 1 23 1084 1106 1084 1106 0.95 26 27 9.9e-07 7.9e-05 23.0 1.0 1 23 1112 1134 1112 1134 0.99 27 27 3.5e-06 0.00028 21.3 1.5 1 23 1140 1162 1140 1163 0.96
Sequence Information
- Coding Sequence
- ATGGAAGCAAAAACATCGGAATGGCGACCGGGCCCTGCCGTATGTCGATGTTGTCTTGCAGAAGGTTGTTATAAAGACATTTCTACTGAGTATTTCTGGATGGGAAAACGTGAAGTGTACGCAGAAATGCTTACCGATActctaaatttaaatattGCGTACTCCCAGTCTGGTGGACCTAATAGTAATAGTCGGTTAATATGTGAACCGTGTATATCTCGTCTGCGGGATGCTACAGACTTTAAGAGGCAGGTGCAGGAGTGCGAGAAGACATTCCTCCAGCATCTTGATCCCACCACTTCGGGGATTGTTGCTGAAGATGTAACAAGTGAATCGGTACTAAGAGGGAAGCAGGTGAAGATTGAGCTGGTTAAACTGGAGAAGTTGGacagtgatgatgatgattatgaaCCGCCGCGATTctctgatgatgatgatggtgatgatgacaTTGACGATCAACCGTTAACAAAATTAGCGAAAGCACCAAAGAAAGAATCTGTCGATTTATTGGACTTGATTGATAATGCAAAAGTTGCGGAGAAGAGAAAATCAACTTCAACGGTAAAAGCAACGCCGGTTAAGAAAGCTAAGAAGAAAGAAACGAAAACGACAAACAAAGATAAACCggaaaagaagaaaaaaggagATGAAGAAAATAGTGCATCACAAAGCACCTCAACCGATACTGTTAAATGGAGCAGAAAAAGGAAGCTGGCCGCTGAGAATGTGAATGCGGCTATTATACTAGAGCATTCGAATACAGTAGTGTTTAGATGGAATCGAGGAAAGTTTATGTGCGCCTACTGCCCCTCAACATACACGAGCGTCAAAGAAATTCGACTTCACTCGGAGGATCATAAAAGCAAActtgatgtatttttttataatcccGAAGTACGTAATAAATATCCGTTACGAGTGGATATAACAGACCTTTgttgtataatttgtaatgaGAAGACTGAAAATTTAGAAGTATTGAAGAAACATCTAATCgatatacataataaaacatttaattcgaATAGTATTAGCTTGGTGCCCTTCGTGCTGACTAGTGAGAAGTATTCATGCGTGGCGTGCAGTAAATACTTTGAGACATTGATGGCTTTGTTTTCGCATATGAATGAACATTATTCGGATTACGTTTGCTATACTTGCGGCAAAGGATATTCTAGTAAGCATAAATTGCAATCACACCAAAAGTATCATGAATCTGGTGAATTTCAATGTCCTAAATGTGAGACTGTGTTGGCAAGTCGTGTTCAAAGAGATCAACATGTATCTAAAGTGCATGGCTCCAAGGAAAGGTATAGATGCCCTATCTGCAATGAACAGTTCTCGTCTTACTATTCTCGTTTGAAACATTTGGATAAGACGCATGGACAAAAGGCGgaatataaatgtaacttGTGCTCCTGTGTATTTAGATGTGCAGGATTACGGTGGAGATGGGGTAAATTTATTTGCGCTTACTGTCCTGCATCGTCTGCAGACTTTAAAGGATTCAGAGAACACGTGGCAAAACATTCGAAAACGGAAGAAACGGCGACTTTGTCGCGACCCGTCGACTATACGAAAGCCGAGGTCTCTGACCTTCAATGTGAATTGTGCTCACAGAAAGCTAAAGATCTAAACCATCTTCTCGATCATTTAATAGATGTTCATAAGAAGCCCATTGTTAAAGAGTACGGAGTAGGTATCACACCTTTTTACCTCATCGGTGATGAGTATATCTGCACAGTTTGCGGTGACAAATTCGATCTGTTCACCAAACTAAACTCACATATGAATTGTCATTCTACGGAGCATATATGCTTTAGATGCGGCAGAACTTTTTCCGGCGCGCATAGACTCAAGGCGCACCTGGTCTCACATGGGGCGACAGACGAAGAATGCAAATGCACGAAGTGCGGCGAAACTTTCGCGAACCTCAAGCTAAGAGCGTCCCACATGAACGTCCACAAGCCCAAGTTGAGATATAGGTGCGCCTACTGTAATGAGAAATTTAAGGAATACAGCCAAAGACGTAAACATCTCGAAAAAGTTCACGACAAAAAACGTGAGCATGCGTGTCACCTATGTCCATCCGTGTTCCATACTTTCAATCAGCGGACAAAGCATATTAAGTTTGTCCATTTAAAAGAGAAGCCGTTTCAATGCCCGGATTGTCCGTACAGATCGTCAACGGCGGCGTTGATGAGGAACCACGCTGTGAAACACGACGGAACAAGGAAGTTTAAGTGCGACGTGTGCTCCAAGTCGTATGCTCGGCTAAAATCGATACGTGAACACATGCGTATCCATAATAACGAGAAGCGCTTCACTTGCGAGTTTTGTGGCAGCGCGTTCGTGCAGAAGTGCAGCTGGAAGAgaAGAAAATCTGAAGATATACAGATTAAGAATGAAGTGGAATCTGACTTGGAAAATATAGGTGTCGCTGTGATTGAGACAGGGCGGGACTCGGGGAACGAGCGACGTGCTGCGTTCCgaaataacattaaagtaaTCATAGAGTCGTGCACCGCCTGCCCCTTCAAGTACAGAAAGGGTACTTACCTCTGCTACTTCTGCAAAACCTCCTTCTTGGAGCCGGAGCGTCTGCGCGATCACACCCGCCGCGAACACTGTGACACCAAACAGTTGCTAAAGCCGCGCAAATACGAACCTTTGAAAATGGACTTTGCACTCACTACGTGCAAATTATGCGGCCTCTCCATTACTGATTACGAAATGCTCAAATCTCACTTACGAGAACACGGAAAACATCTAGACTGCTCCTTTGGTGACAGTATACTGCCATACAGTTTGACTAAGGACGACCATCGTTGTCAAATATGCGGTAAACGTTACGAGATGTTCCTAAGTCTGCATAAACATATGAATGAGCATTATGAGCACTTTATATGTGAGACGTGCGGCAAGCGGTTCGCTACATCTCAGCGCATGGTCAACCACGCCAGGACGCACGAGCGAGGCGACTTCCCCTGCAAGCGTTGTAAGGAAACGTTCCCATCTTACGCTTCACTTTACGCGCACATAGCTAAGATTCATAGATCAAATAAGAGATATAAGTGTCCGATTTGCGATGAGAAATTTGCTTCCTACAAGCATCGCTTGAAACATCTAAACACGATTCATGGAGAGAAGACGGCAATATTTCCCTGTCCGTCGTGTCCTCGAGTGTTCGACCTGTGCAGTCGACGCACCGCGCATATACGTTTCCAACACCTTCAGGAGCGAAACCACTCGTGTTCTTTATGTTTTATGaagttttttactaaatacgaACTCCAGGAGCATTCGATTAAGCATGGCGGTGAGAGGATATACCAGTGCGATGTATGCAAGAAGTCATACGCCCGGTTGAAGACGTTAAGAGAACATATGCGTATACATAATAACGATAGACGGTTTGTATGTCCCGTGTGCGGACAGGCCTTTATACAGAACTGTAGTTTGAAACAGCACGTCAGAGTTCACCATCCCAGTCAAACGAAATcggatttattttaa
- Protein Sequence
- MEAKTSEWRPGPAVCRCCLAEGCYKDISTEYFWMGKREVYAEMLTDTLNLNIAYSQSGGPNSNSRLICEPCISRLRDATDFKRQVQECEKTFLQHLDPTTSGIVAEDVTSESVLRGKQVKIELVKLEKLDSDDDDYEPPRFSDDDDGDDDIDDQPLTKLAKAPKKESVDLLDLIDNAKVAEKRKSTSTVKATPVKKAKKKETKTTNKDKPEKKKKGDEENSASQSTSTDTVKWSRKRKLAAENVNAAIILEHSNTVVFRWNRGKFMCAYCPSTYTSVKEIRLHSEDHKSKLDVFFYNPEVRNKYPLRVDITDLCCIICNEKTENLEVLKKHLIDIHNKTFNSNSISLVPFVLTSEKYSCVACSKYFETLMALFSHMNEHYSDYVCYTCGKGYSSKHKLQSHQKYHESGEFQCPKCETVLASRVQRDQHVSKVHGSKERYRCPICNEQFSSYYSRLKHLDKTHGQKAEYKCNLCSCVFRCAGLRWRWGKFICAYCPASSADFKGFREHVAKHSKTEETATLSRPVDYTKAEVSDLQCELCSQKAKDLNHLLDHLIDVHKKPIVKEYGVGITPFYLIGDEYICTVCGDKFDLFTKLNSHMNCHSTEHICFRCGRTFSGAHRLKAHLVSHGATDEECKCTKCGETFANLKLRASHMNVHKPKLRYRCAYCNEKFKEYSQRRKHLEKVHDKKREHACHLCPSVFHTFNQRTKHIKFVHLKEKPFQCPDCPYRSSTAALMRNHAVKHDGTRKFKCDVCSKSYARLKSIREHMRIHNNEKRFTCEFCGSAFVQKCSWKRRKSEDIQIKNEVESDLENIGVAVIETGRDSGNERRAAFRNNIKVIIESCTACPFKYRKGTYLCYFCKTSFLEPERLRDHTRREHCDTKQLLKPRKYEPLKMDFALTTCKLCGLSITDYEMLKSHLREHGKHLDCSFGDSILPYSLTKDDHRCQICGKRYEMFLSLHKHMNEHYEHFICETCGKRFATSQRMVNHARTHERGDFPCKRCKETFPSYASLYAHIAKIHRSNKRYKCPICDEKFASYKHRLKHLNTIHGEKTAIFPCPSCPRVFDLCSRRTAHIRFQHLQERNHSCSLCFMKFFTKYELQEHSIKHGGERIYQCDVCKKSYARLKTLREHMRIHNNDRRFVCPVCGQAFIQNCSLKQHVRVHHPSQTKSDLF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -