Basic Information

Insect: Papilio dardanus
Gene Symbol: -
Assembly: GCA_013186455.1
Location: QDHC01003034.1:137373-141710[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5e-06 0.0004 20.8 2.3 2 23 161 182 160 182 0.96

2 12 0.00011 0.0086 16.6 0.7 1 23 189 211 189 211 0.96

3 12 4.6e-05 0.0037 17.7 2.5 1 23 228 250 228 250 0.99

4 12 0.0048 0.38 11.4 4.6 2 20 258 276 257 279 0.92

5 12 5.2e-07 4.1e-05 23.9 3.6 1 23 285 307 285 307 0.99

6 12 4.9e-07 3.9e-05 23.9 4.1 1 23 313 335 313 335 0.98

7 12 1.1e-07 9e-06 25.9 2.0 1 23 341 363 341 363 0.96

8 12 0.00032 0.025 15.1 3.3 1 23 369 391 369 391 0.97

9 12 0.00035 0.028 15.0 2.1 1 23 397 419 397 419 0.97

10 12 3.7e-06 0.0003 21.2 5.2 1 23 425 447 425 447 0.98

11 12 6.4e-06 0.00051 20.4 1.4 1 23 453 475 453 475 0.98

12 12 0.00094 0.075 13.6 2.0 1 23 481 503 481 503 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5e-06	0.0004	20.8	2.3	2	23	161	182	160	182	0.96
2	12	0.00011	0.0086	16.6	0.7	1	23	189	211	189	211	0.96
3	12	4.6e-05	0.0037	17.7	2.5	1	23	228	250	228	250	0.99
4	12	0.0048	0.38	11.4	4.6	2	20	258	276	257	279	0.92
5	12	5.2e-07	4.1e-05	23.9	3.6	1	23	285	307	285	307	0.99
6	12	4.9e-07	3.9e-05	23.9	4.1	1	23	313	335	313	335	0.98
7	12	1.1e-07	9e-06	25.9	2.0	1	23	341	363	341	363	0.96
8	12	0.00032	0.025	15.1	3.3	1	23	369	391	369	391	0.97
9	12	0.00035	0.028	15.0	2.1	1	23	397	419	397	419	0.97
10	12	3.7e-06	0.0003	21.2	5.2	1	23	425	447	425	447	0.98
11	12	6.4e-06	0.00051	20.4	1.4	1	23	453	475	453	475	0.98
12	12	0.00094	0.075	13.6	2.0	1	23	481	503	481	503	0.97

Sequence Information

Coding Sequence: ATGGCTTCAGATTTAACTTGTAAAAGTTTGGTCTCCAGTTGTAGGACTTGCTTAAATGACTGTTCTGAGCaactgtataatatttttgactaTACAAAAGATTCCATAAATATAGCTCATATATTATTAACCTGTACAGGGCTAGCAGCTAACGCTGAGGACTGTCTTCCAAAAACTGTATGCAACAGTTGTTACAATAACCTTGTTAGTTTTTACAATTTCTGTTTGGTTGCAAGGAGAATTGATACATATCTAAGAAGTCAAAACAATTATGATACTAATGACAACTCAATATCACAAAATATACTGGCAGATATTAAGATGGAATCAGATGATAATTTCGATGCACTCAACAATCAAGtgactgaaataaaaatagaaataggaTCAAACcttgatgaaaataaaaattcaacaatttataatgatttttcatacataaaaACAGAAGACAATCAAACTGaagttaaacttaaattaaaatgtgataTATGCGATAAGAAGTTTAATAATCTGTCCAAATTAAATAAGCATAAAGAGaaacattataaagtaaataatttatacatctGTGATATATGTTCGCAGAGTTTTAAGCACCAAATTAAACTTGTCAACCATTTAGTTATACATAGCCAAGAAAATAAGATCCCAAATGAGAACCAAAGTGaaaataagatatataaatgtgacatatgctcaagtatatttaaatcaatgcaTTCGTTATCCGCTCATATGAGAAAACACGTACAGAAAGACAGAGTACTCTCTTGTAATGTATGTGagaagaattttaataaaataagtcatTTGAAACGTCATGAACAATGTCATATTGACAATCGACCATTTAAATGTACGATTTGTCCTAAAACATTCGTAAAACAAAGTTGTTTAAATGAGCATATGAATAAACATAACGGTATCAAACCGCACACATGTCCGTTATGCCATAAATCCTTTTCACAATTATCTACTTTAACAAATCATATAAAGATACATAGTTCGGACAAGGTGTTCTTGTGTCCGACTTGCGGTAAGAAGTTTAATTCTAGTACGAATCTTAATCAACACATGAAGAGGCACATCGGACATAAAGCATTCGCTTGTCATTTCTGTCCGAAACACTTTATTAGTAAAGGTGAAATGATGTCTCATGCGAAAACTCATACAGGTGAGAGATCGTTCGCTTGTGACCAATGTAATGGAAAGTTTACAAAACGCAGTTCCCTCGTCAAGCATAAGCAACGCCATCTTGGTTTGAAGCCACACAAATGTGATGTCTGTCCGATGAAgtTTAATAGTAAAGATCATTTGAAACGTCACTATCGTATACATACGGGAGAAAAACCTTACCGTTGTGAATTCTGCACTAGAGCCTTCACACAGAGTAACGATTTGGTAAAACATAGACGAGCGCATTTAGGTGATAAATTGTATAAATGTACACAATGCAATGACAGTTTCCGCTTGCAGACTGAACTACGTCAACATTTGTCACAGCATTACATTACAAGATATCTAGAAAAGAGAGACCAATTGGTCTCCAATACTGAAAATACAGACGTACCTGAAATTAATCAAACTCAGTTCACCGCAATCATTGATATGAgacaaaatcaaaataatacatga
Protein Sequence: MASDLTCKSLVSSCRTCLNDCSEQLYNIFDYTKDSINIAHILLTCTGLAANAEDCLPKTVCNSCYNNLVSFYNFCLVARRIDTYLRSQNNYDTNDNSISQNILADIKMESDDNFDALNNQVTEIKIEIGSNLDENKNSTIYNDFSYIKTEDNQTEVKLKLKCDICDKKFNNLSKLNKHKEKHYKVNNLYICDICSQSFKHQIKLVNHLVIHSQENKIPNENQSENKIYKCDICSSIFKSMHSLSAHMRKHVQKDRVLSCNVCEKNFNKISHLKRHEQCHIDNRPFKCTICPKTFVKQSCLNEHMNKHNGIKPHTCPLCHKSFSQLSTLTNHIKIHSSDKVFLCPTCGKKFNSSTNLNQHMKRHIGHKAFACHFCPKHFISKGEMMSHAKTHTGERSFACDQCNGKFTKRSSLVKHKQRHLGLKPHKCDVCPMKFNSKDHLKRHYRIHTGEKPYRCEFCTRAFTQSNDLVKHRRAHLGDKLYKCTQCNDSFRLQTELRQHLSQHYITRYLEKRDQLVSNTENTDVPEINQTQFTAIIDMRQNQNNT

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01144709; iTF_01149762; iTF_01145415; iTF_01142545; iTF_01143997; iTF_01147535; iTF_01139104;
90% Identity: -
80% Identity: -