Pdar006057.1
Basic Information
- Insect
- Papilio dardanus
- Gene Symbol
- Zfa_1
- Assembly
- GCA_013186455.1
- Location
- QDHC01003331.1:527252-532908[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 6.1e-05 0.0048 17.4 0.6 1 21 163 183 163 184 0.96 2 26 0.68 54 4.6 0.2 1 23 217 240 217 240 0.96 3 26 1.2e-05 0.00095 19.6 2.1 2 23 246 267 245 267 0.95 4 26 0.014 1.1 9.9 2.2 2 21 271 290 270 291 0.92 5 26 0.0055 0.43 11.2 0.7 2 23 329 351 328 351 0.94 6 26 0.016 1.3 9.7 0.3 1 23 383 405 383 405 0.98 7 26 0.0031 0.25 12.0 1.5 1 23 411 434 411 434 0.97 8 26 0.0006 0.048 14.2 2.4 1 23 443 465 443 465 0.97 9 26 6.6e-05 0.0053 17.2 0.2 2 22 582 602 581 602 0.94 10 26 0.00088 0.07 13.7 1.9 2 23 634 656 633 656 0.96 11 26 0.0011 0.089 13.4 0.2 1 23 661 683 661 683 0.94 12 26 1.6 1.3e+02 3.4 2.1 1 20 686 705 686 706 0.94 13 26 0.00022 0.017 15.6 3.3 1 23 719 742 719 742 0.97 14 26 0.14 11 6.8 1.5 1 23 748 770 748 770 0.89 15 26 1.8 1.4e+02 3.3 1.3 5 23 780 798 779 798 0.97 16 26 0.14 11 6.7 0.9 1 23 804 827 804 827 0.85 17 26 0.00039 0.031 14.8 1.1 1 21 835 855 835 856 0.95 18 26 0.00082 0.066 13.8 1.4 2 21 965 984 964 985 0.93 19 26 0.0027 0.21 12.2 3.1 1 23 1018 1041 1018 1041 0.96 20 26 4e-05 0.0032 17.9 0.2 2 23 1047 1068 1046 1068 0.96 21 26 0.66 52 4.7 1.7 2 20 1072 1090 1072 1092 0.92 22 26 0.001 0.083 13.5 0.2 1 23 1118 1141 1118 1141 0.91 23 26 0.00046 0.037 14.6 0.9 1 23 1147 1169 1147 1169 0.95 24 26 0.078 6.2 7.6 0.1 1 23 1175 1197 1175 1197 0.97 25 26 0.04 3.2 8.5 0.9 1 23 1203 1226 1203 1226 0.94 26 26 0.00063 0.05 14.2 0.3 2 23 1233 1255 1232 1255 0.95
Sequence Information
- Coding Sequence
- ATGAGCCGCCAAGTGGACATAAAAGCATTAGTTTCACACGTAGTAAGAGGAGatggtataaataaatgtcgaATTTGTATGGGAGATACATCGGAAGGTCAAGTTTTTCTTGGCGATACAGTATTGATGGACGGAGATCAACCTGTAACATTATCGGAGCTGTTGGAGACTATAACAGGAGTTCAGATGCCGATCGATGAAGACCTGCCCGTCAACATCTGCTCATTATGCTCCCTGTCGGCTTTAACCGCAGCAGACTTCCGCACGGCATGCAGGCGTGCTGCCCACAAGTGGGACACCATCGTACAACTGTTAGCCAATTTGCCACAACACGCGAGAAACAAATCGCTTATTGCTCTTGTAGAAGAAGACCAGATGGTCCTTTTGAATGATGGCGATATATCGTCAAGGAAAACAGCAGCTCGCAGATTAAATAGACAGATGAGGCCTGTACAGGAGTCTGAAGTTAAAACGCAGAAACATCGTTACCAATGTCCAGATTGTGGCAAACAGTTTGGTTACGTCCACCAGTTGTACCGCCATTTAAAGGAATCGACAGATTTCAAACGAGCCTGTTACATTTGTGCTAAAATCATGAGTCGAGATGAATTAGTGATACATCTAAAAGATCAGCATAATAGAAAACCTTATGATTGTAAAAAGTGTCCTGCTCTACTGCCTTCCTATATTCAATACAGTCAGCACTTACGTAAGGCGCATTCTCAAGGTTCCTGCACTTGTGGTGATTGTGGACGTAGTTTCAAGAACTCCAATAGCTTCAGAGCTCATCTCTCAGTGCACACGATAAAGTCTTGCCCTAGTTGTGATAAAGTGTTCAGAAATCAAACATGTTACTTGTACCATGTGAAGAAATGCTGTAATTTAGAAGGTACAACGGCAAAGAGTAAGACGATCGAAGTGAAGAATAAATGGAGCGATAAGAGAGTGAAAGTAGGTTTGAGGGGTAGAATTGAAAAGGAGTGTATTTGTGATTATTGTGACAAAAAGTTTGCAGGCAAGAAGTTTATATCCGCGCATATTCAGATCGTCCATATGAAGAATACGCACAGTCCATGCGTGTACTGCGGCAAGTTGCTCGCTGCGGCTCATATGTCGGAACACGTGAAGAAACATCAAGATTTATCATTCAAATGTGATCTGTGTGGTGTTATATTAAGGACTAAATTGGGTTATAGCCAACACTTGCGTTTGCACAGCGGTGAAAAGCCGTACACTTGTCAGTACTGTAAGGAATCATTTTCCGCTTCGTCCAGACGATCAGAGCATATACGGAAAGTACATAAGAGTTCTGATATAGTGTTGAAACATGAATGTAGTAAGTGCTCGGCAAAGTTCCGACTACCCTACATGCTGAAGAAGCACATGACAGTACACAATACTGAAAGGCAGGCATTGTTCGAATGCTACGTGGAGGAGGCGAAGAGTTTCCCGCGCGGCATCTGTGCCTCATGCACACAGACGGCGCTAACGGCCGCAAGTTTCCGTAATAACTGCCTAGATTCAGCAAACCAATGGAATCGAGCTACCACCATCCTCACAAATATACCAATTCCTCTTCAAAAAGAGCAAACATTTTTCGTACTTTATGATAAAGAAGTCGtacttaaagaaaataatcataCATCAACCACATTAAAGGCTGTTGATAGACTAAATCAAATACTCCATGAACCTTCCAAAGTCTCTCAGCGTCAGAAATCATTTAGCAAAGGTGCGCCCTGGATATGCAAAGATTGTGGCAAGAAATTCAGATTATTATActctttaaatatacatttaaggATGACTACAAATAGAGCTTGTACGCATTGTGGCTTAATTATTAAGAAGAAAAAGCTATGCCAGCATTTAGAAAGATCgcataatatacatttatgtcaATGCGAAATATGCcataagttatttaaagaaGAATCCGACTTAGATCTACATATACAAACAGCACATAGTGTGATCTCTTTCTCTTGTCCAGTTTGCAAACAAGGTTTTGTGAACGAGAGGGCGCTGCGAGCACATAAGTACGCCCATACGTTATTTAACTGCCTCTCATGTAATACCAGCTTTGAAAACCTAAGGTGTTATAGATACCATATTGGTCACTGTGAAGGCTCGAAGGCGCCTCCAAATTCATTGTTCAAATGCGATTATTGCGGCTgtgaatatataaaaaaggattCTCTGAAAAGTCACATCCAGAATAAACATTTAAGGGTATTACAGTTTGTGTGCCAGAAGTGTGGGAAGAGAAGTGCTAGTTTGGCTCATCACAAAGCGCACGAAATCATCCACCTTGAAGAAAGGAAAGTTTTCATATGCCACTGTGGTGCTAAGCTGACGACTCAGCTCGGTTACAATTTGCACCAAAGGATACATTCAGGTGAAAAGCCTTACGAGTGTAAGAAATGTGGTGAGAGGTTCCTATCGGCTTCTAGAAGGCTGGATCATGTTAAGAGACGGCATACGAATTTGGAAGACATGCCTCATAAATGTAGGGAATGCTCGGCTAAATTTATAAGACCCTCGTTACTCAAGAAGCACTATAAAGTGgTTACTGATGACGCCTTCTGCCCTCGAGGTATCTGTGTGACTTGTACGGACGCCGGCATCAACGCTTACGAGTTCCGAATCCTAACAAAGACATCCCACAAAGTGTGGTCCAACTGCGTGAACGATTTAGACCAGGCTATGGGCAGCAGTAAACCACCTAATTCCTTGTACACTATAATGAGAGAAGATCTGTCAGTTCTGTCGGTCAACAACTTCAATGGAGACTCCAAATCCCTGCTGAATCATCTCCTCAATCGCGTGTCAAATAAGAAACATGTGGAAGTGGAAAAGAAGCCGAGAGCCGCACGTTCGGGCCCACCCTGCAAGTGCATGGATTGTGGGAAACTATTCAATAGCCCATACTATCTGACATTGCACTTAAAGAACAGTGGCCAGAAGGAGGCGTGTGCCTTGTGTGGTACAATGGTGTTTAGAGGCTTGGAAATGAAGGAGCATCTTCAGGCGGCCCACGGCAAAGATGTCCACATGTGTACTGATTGTCCGATGCTATTCTCTCACGAAAACGAACTGAAGCAACACACGAAGCGAGCACACAGGCCGGGCGCTCTGACCTGCTTCGACTGCGGAAGAACTTTCCCGAGAAACGCATCTTTCGAGGTCCATGCTCAAATGCACGCAGTAAGGACCTGCAGGTCGTGTGGTGCTCAGTTCTCGAACAGAGCGTGCTATAGGGAGCACCGGTCAAACTGCGAGCCGGATGCGAAACCGGACACCAAAAATGTACCTCGCAGCCGACGATCAAATATACGGGATCCCGCAACCTTCATATGTGACTATTGCGGCAAAAGCTACCTATCCAGACCTCAGCTGAAGAACCATATCGTCTGGATTCACATGGACGTAAGACCTCATCAGTGTCAATGGTGCGGAAAGAGGTTTTATACTCCTACCCGCCTGGCTGAGCACACGGTGGTTCACACGCGGGAAAGGAACTTCGAATGTGACATTTGTGGGGCGAAACTCGTTTCCAAGATGGCGGCGGTGTACCATAGACGACGACACACGGGCGAAAAGCCCTACGAGTGTCAGTCTTGTGGAGAAAGGTTTATATCTTCTTCGCGAAGGTCGGAGCACGCTAAGCGTCGACATGGGATAGGGTCAAAACTGCAGTGCATGGATTGTCCCGCTATGTTTGTGAGGATTCACGAATTGAAGAAGCATATAGCTAAAGTGCACGGAACTCATAATTCTGATTTAGCTATTACTGCATAA
- Protein Sequence
- MSRQVDIKALVSHVVRGDGINKCRICMGDTSEGQVFLGDTVLMDGDQPVTLSELLETITGVQMPIDEDLPVNICSLCSLSALTAADFRTACRRAAHKWDTIVQLLANLPQHARNKSLIALVEEDQMVLLNDGDISSRKTAARRLNRQMRPVQESEVKTQKHRYQCPDCGKQFGYVHQLYRHLKESTDFKRACYICAKIMSRDELVIHLKDQHNRKPYDCKKCPALLPSYIQYSQHLRKAHSQGSCTCGDCGRSFKNSNSFRAHLSVHTIKSCPSCDKVFRNQTCYLYHVKKCCNLEGTTAKSKTIEVKNKWSDKRVKVGLRGRIEKECICDYCDKKFAGKKFISAHIQIVHMKNTHSPCVYCGKLLAAAHMSEHVKKHQDLSFKCDLCGVILRTKLGYSQHLRLHSGEKPYTCQYCKESFSASSRRSEHIRKVHKSSDIVLKHECSKCSAKFRLPYMLKKHMTVHNTERQALFECYVEEAKSFPRGICASCTQTALTAASFRNNCLDSANQWNRATTILTNIPIPLQKEQTFFVLYDKEVVLKENNHTSTTLKAVDRLNQILHEPSKVSQRQKSFSKGAPWICKDCGKKFRLLYSLNIHLRMTTNRACTHCGLIIKKKKLCQHLERSHNIHLCQCEICHKLFKEESDLDLHIQTAHSVISFSCPVCKQGFVNERALRAHKYAHTLFNCLSCNTSFENLRCYRYHIGHCEGSKAPPNSLFKCDYCGCEYIKKDSLKSHIQNKHLRVLQFVCQKCGKRSASLAHHKAHEIIHLEERKVFICHCGAKLTTQLGYNLHQRIHSGEKPYECKKCGERFLSASRRLDHVKRRHTNLEDMPHKCRECSAKFIRPSLLKKHYKVVTDDAFCPRGICVTCTDAGINAYEFRILTKTSHKVWSNCVNDLDQAMGSSKPPNSLYTIMREDLSVLSVNNFNGDSKSLLNHLLNRVSNKKHVEVEKKPRAARSGPPCKCMDCGKLFNSPYYLTLHLKNSGQKEACALCGTMVFRGLEMKEHLQAAHGKDVHMCTDCPMLFSHENELKQHTKRAHRPGALTCFDCGRTFPRNASFEVHAQMHAVRTCRSCGAQFSNRACYREHRSNCEPDAKPDTKNVPRSRRSNIRDPATFICDYCGKSYLSRPQLKNHIVWIHMDVRPHQCQWCGKRFYTPTRLAEHTVVHTRERNFECDICGAKLVSKMAAVYHRRRHTGEKPYECQSCGERFISSSRRSEHAKRRHGIGSKLQCMDCPAMFVRIHELKKHIAKVHGTHNSDLAITA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01139100;
- 90% Identity
- -
- 80% Identity
- -