Basic Information

Insect: Papilio clytia
Gene Symbol: stc
Assembly: GCA_018247735.1
Location: DWGS01019615.1:1037-5175[+]

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 1.1 1.8e+04 -2.7 1.6 15 19 120 124 119 124 0.81

2 8 0.056 9.5e+02 1.4 0.8 4 10 154 160 152 160 0.91

3 8 1.6e-05 0.27 12.7 18.1 4 19 168 183 166 183 0.93

4 8 1.4e-08 0.00024 22.5 13.9 1 19 219 237 219 237 0.98

5 8 0.7 1.2e+04 -2.1 1.3 8 11 242 245 241 247 0.85

6 8 5.6e-06 0.095 14.2 14.2 1 19 278 296 278 296 0.99

7 8 9.7e-08 0.0017 19.8 13.8 1 19 337 359 337 359 0.88

8 8 2.1 3.6e+04 -3.6 2.2 6 10 389 393 389 393 0.94

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	1.1	1.8e+04	-2.7	1.6	15	19	120	124	119	124	0.81
2	8	0.056	9.5e+02	1.4	0.8	4	10	154	160	152	160	0.91
3	8	1.6e-05	0.27	12.7	18.1	4	19	168	183	166	183	0.93
4	8	1.4e-08	0.00024	22.5	13.9	1	19	219	237	219	237	0.98
5	8	0.7	1.2e+04	-2.1	1.3	8	11	242	245	241	247	0.85
6	8	5.6e-06	0.095	14.2	14.2	1	19	278	296	278	296	0.99
7	8	9.7e-08	0.0017	19.8	13.8	1	19	337	359	337	359	0.88
8	8	2.1	3.6e+04	-3.6	2.2	6	10	389	393	389	393	0.94

Sequence Information

Coding Sequence: atgtcgcAGTGGAATAATTCTTATGATCGTAGCTATGTTGAAGATGAGCAATATGCTAATACATACATGCACTATAAAGATGAAAGGCCGGAACGGGTAgttagtaaaaatgaaaaaacagcAAGTCCTGTAAAAGGAAGAAATAAGTCTGCTAATGTCTCTGGAGGCAACACAGCTATGACCCAACGCGAACGTCTCACTGATCAATTAGACAAGGGCACCTTGGAATGTCTGGTGTGCTGTGAAAGGGTCAAACAAACAGACTCTGTGTGGTGGTGCTCCAATTGTTACCATGTTTTACATCTAAGATGTATTAGAAAATGGGCCATGAGCAGTTTAGTggAAAGTAAATGGAGATGTCCAGCGTGTCAAAACACAAACGAGGATATACCGACAGAGTACCGTTGCATGTGCGGTGCTGTCAAATCACCAGAGTACTCTCGAGGTTCAGTCAGCGCACATACGTGTGGTAAATCATGCCGTCGTCCGAGGAATTGCCCGCATCCTTGCACTTTGCTCTGCCATCCTGGTCCCTGTCCACCTTGCCAGGCAACTATTAGCAAacaATGCGGTTGCGGAGCGGAAACTCGTTCGGTGCTGTGCAGCAGCAAGCTGGCGCAACTGTGTGGGCGCGAGTGTCGCCGCAAGCTGGCCTGCGGTGTGCACGAGTGCCAACGTGAATGCCATGAGGGACCCTGTGATGAATGCTCGGAAATTGTCACACAAGTGTGCCATTGTCCTGCGGCGAAGACGCGTTCCGTGCCGTGCACGTCAGAGACTAGCGAAGAGCGCGCGTGGTCGTGCGGCGCGGCGTGCGCGCGTGTGCTCTCCTGCGGCGCGCACGTGTGCCGACGCGTCTGCCACCCGCCGCCCTGCGCGCCCTGCCCGCTGCGACCCGACAACGTGCGCTCCTGCCCCTGCGGCAACACGAAGATTGAAAAGGATCAACGGAAATCCTGCGCCGATCCGATTCCTCTGTGCGGGAACATCTGTGCCAAGTCGTTACCGTGCGGTCCCGAGGGAGACAAACACTTCTGTAAACAATTGTGTCACGaaggTCCATGCCCAACTTGCCCCGACAAGACGCTGCTGCCGTGCCGTTGCGGCCACTCCAGCCGCGAGGTGCCGTGCTCCGACCTCCCGGAGATGCTCAACAATATCTTCTGTCAGAAGAAATGTAACAaggtagttaaaaaataa
Protein Sequence: MSQWNNSYDRSYVEDEQYANTYMHYKDERPERVVSKNEKTASPVKGRNKSANVSGGNTAMTQRERLTDQLDKGTLECLVCCERVKQTDSVWWCSNCYHVLHLRCIRKWAMSSLVESKWRCPACQNTNEDIPTEYRCMCGAVKSPEYSRGSVSAHTCGKSCRRPRNCPHPCTLLCHPGPCPPCQATISKQCGCGAETRSVLCSSKLAQLCGRECRRKLACGVHECQRECHEGPCDECSEIVTQVCHCPAAKTRSVPCTSETSEERAWSCGAACARVLSCGAHVCRRVCHPPPCAPCPLRPDNVRSCPCGNTKIEKDQRKSCADPIPLCGNICAKSLPCGPEGDKHFCKQLCHEGPCPTCPDKTLLPCRCGHSSREVPCSDLPEMLNNIFCQKKCNKVVKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -