Basic Information

Insect: Papilio clytia
Gene Symbol: -
Assembly: GCA_018247735.1
Location: DWGS01007155.1:3346-8896[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 1.2e-05 0.0028 19.4 0.6 2 23 21 43 20 43 0.96

2 20 0.00013 0.031 16.2 1.4 2 23 106 127 105 127 0.97

3 20 7.9e-05 0.019 16.8 4.1 2 23 168 190 167 190 0.97

4 20 5.6e-05 0.013 17.3 1.2 1 23 240 263 240 263 0.97

5 20 0.0011 0.26 13.3 0.2 1 23 319 341 319 341 0.97

6 20 0.012 3 9.9 5.1 2 23 353 374 352 374 0.96

7 20 0.031 7.3 8.7 1.9 2 23 386 407 385 407 0.96

8 20 0.0075 1.8 10.6 1.1 1 23 417 439 417 439 0.98

9 20 0.0079 1.9 10.6 7.6 1 23 467 489 467 489 0.96

10 20 7.6e-05 0.018 16.9 1.6 1 23 500 522 500 522 0.98

11 20 0.0022 0.53 12.3 1.3 1 23 530 552 530 552 0.95

12 20 1.5e-05 0.0036 19.1 0.2 2 23 572 594 571 594 0.97

13 20 0.53 1.3e+02 4.8 1.0 1 23 612 634 612 634 0.91

14 20 2.5 5.8e+02 2.7 5.2 1 23 641 663 641 663 0.85

15 20 0.0022 0.52 12.3 5.6 2 23 674 696 673 696 0.95

16 20 0.0022 0.52 12.3 0.2 2 23 719 740 718 740 0.95

17 20 5.6 1.3e+03 1.6 0.3 2 20 744 762 743 763 0.75

18 20 0.088 21 7.3 0.4 2 23 839 860 838 860 0.93

19 20 0.00015 0.035 16.0 0.3 2 23 871 893 870 893 0.97

20 20 4.3 1e+03 1.9 2.2 2 19 931 948 930 951 0.86

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	1.2e-05	0.0028	19.4	0.6	2	23	21	43	20	43	0.96
2	20	0.00013	0.031	16.2	1.4	2	23	106	127	105	127	0.97
3	20	7.9e-05	0.019	16.8	4.1	2	23	168	190	167	190	0.97
4	20	5.6e-05	0.013	17.3	1.2	1	23	240	263	240	263	0.97
5	20	0.0011	0.26	13.3	0.2	1	23	319	341	319	341	0.97
6	20	0.012	3	9.9	5.1	2	23	353	374	352	374	0.96
7	20	0.031	7.3	8.7	1.9	2	23	386	407	385	407	0.96
8	20	0.0075	1.8	10.6	1.1	1	23	417	439	417	439	0.98
9	20	0.0079	1.9	10.6	7.6	1	23	467	489	467	489	0.96
10	20	7.6e-05	0.018	16.9	1.6	1	23	500	522	500	522	0.98
11	20	0.0022	0.53	12.3	1.3	1	23	530	552	530	552	0.95
12	20	1.5e-05	0.0036	19.1	0.2	2	23	572	594	571	594	0.97
13	20	0.53	1.3e+02	4.8	1.0	1	23	612	634	612	634	0.91
14	20	2.5	5.8e+02	2.7	5.2	1	23	641	663	641	663	0.85
15	20	0.0022	0.52	12.3	5.6	2	23	674	696	673	696	0.95
16	20	0.0022	0.52	12.3	0.2	2	23	719	740	718	740	0.95
17	20	5.6	1.3e+03	1.6	0.3	2	20	744	762	743	763	0.75
18	20	0.088	21	7.3	0.4	2	23	839	860	838	860	0.93
19	20	0.00015	0.035	16.0	0.3	2	23	871	893	870	893	0.97
20	20	4.3	1e+03	1.9	2.2	2	19	931	948	930	951	0.86

Sequence Information

Coding Sequence: ATGAAAGAGTTGCTAGTGTCGTTGGAGCCGATCGACTCTGCTTCCCCGCCGAACAAGCTTAACTGCGAAATGTGCACGACTAAGTTTAAAACAATCGAAAACTTGGAGAAACACATGAGGGTAGTGCACGCGGCTGTTCTCAAACGGGACAACAAGAAGTTGGCGACGCAAGACCTGCTCATAAGTCATCTCGCAGGCCATATGTCCAACATGGGTGAAGAGGAATTAGCGAAAGAGAACACTTGtGAAAGTCCTGTGGATGAAATGTCGGATTCAACAAACTACACGAGCACTCACGTACCTTCTGGGCCACTGCAATGCAGCTTGTGCGAAAAACGATTTACCTACAAAAAGGCCCTGATCACACACGAGCAAAAGCACTTGAATGGAGAAATAGAGATAAAAGCAGAGCCATCGGAAAAGGACATGTCCAGCAGCCTGCTGAGTGAGTCTTACCATCAGTCAGAGTCGGAATCTAGTCAGGACGAGGGTGACGACAAAACTTGCGATATCTGTGAAAAGGAGTTTTCTTACAAGCGTCAGTTGATCCACCACAAGCGTACCAAACACAATATGAGCTCGGGCACAAAGCGAGCGAAGATCAATCTCAAAGACTGCACCGTGAGGTGTCTCATCTGCGACATAGAAATGAAAGTGAGCGCAATAAACGAGCATAACCAGAAACACATCACTGTTAACATAAAACCTCGGAACTTGTACACTTGTGCGGAATGCGAGGAGAAATTTAAGAGCTGCAGCTCTTTGGCCACACACATCAAGCTGGTGCACCGGCTGAAGCAGCCGCAAGTGCCCAAGCTGCAGCGCGCGGAGTTGGCGGATTTTTGTGAGGTCGTCGTGACTAAGACGGAACCTCTGGCCACGGACCAGAGTCGCGACGACCTCGTGACGGTTCCGCCGCCGCACGAGTCCGCGCCGCTGGTCAACCTGACCGGCTTCACCTGCCCCACCTGCGGCAAGCAGATGCCCACCTTGATATCCTTGAAGAGGCATGTCAACTGGCACTCCAATGTGGGCAACAACATTGAGAAGAAGCTGGAGTGCTTTGTCTGCAAGGAGATATTCCGGTTCCAATGCCACTACCGACTGCACATGCGCGAACATTACAAGGACACGAACCTGGACCCGGCCCTGCTCACCTGCACCATCTGCAACCGCAAAAGCAAACACCTCCGCGCCGCACAGGCGCACATGAACTTCCACAAGCAGACGCGCTTCAAGAACAAGGACTATCAGTGCTCCATCTGCAAGAGAATCTTCCAGTTCCGGAAGGTGTACCTCTCGCACATGGCGATACACTACAAGCGTGGCGAGAGCGTCAACAACACAGTGGTCGGCTGTGAGCCGGCTTCCGCCACCGATAGAAAGCTCGCCGGCGCCCATACCTGCCACCACTGCGGCAAGGTGTGCGACTCCGAGATCTCGCTCAAGCACCACGTCATATGGCACAAGTCGAAGACGTCGCTCTTCGGCGCCCGCCACGAGTGCAATATCTGCGGCATACTGTTCACCAACAAGAGAACGCTAGAGCTGCACAACCGAACTCACTACGAAGACGATAATGGTCCCTTCAAATGTACGATATGCGGTAAAGGATTCATCGACGAGGTCTATCATAGGAAACATGTAAAGGGGCACAACTTTGACAACCAATCGCACCAGACGAGGATAGCAAACCTCAGGAAGGACAAAGTGAAGTGTCCGATTTGTGGCCGATTCTATCCCGACTTGGTTAAACTCATTCGCCATCTGCGGCGGACGCATCCCGAGAGCAAAATGATAAAGAACGATCCGGACGCGCCCGAACCGAGCTACTTCTCGTGTAAACTGTGCGCTAAAGTTTTCTTAGACGAGCGCAGGTTACAACACCACGAAGAGGCTCACTTAAGGAAGCCGGAGTTCTTTAAGTGCAAGTTCTGTGGCAAGAAGACTATATCGTTGAAGAATCACCGGTTTCACATTAAGTCTCACTTGACACAAAAGTATCTCGATGAGCCTCTCAAATGCATGCACTGCGACGAGACCTTTACCCGGGGATACGATTTGCATCACCACCTGCGCGACACGCACGACATCAACGAGACGTGGATAGCGGAGCGCACCGAGAAGACGCTAAACGGACCGCTCAAAGAGCTCCAGTGCTCCATTTGCCTTAAGATATTAGCAAGCAAAGGTAACTTCGAACGGCACATCGACTACCATAACTCATTGAGGTGTAACTACTGCTTCGATTACTTCAGCTCGCTGAGGTTCCTGGAGGGCCACCTCGCCTTCAGCTGCGAGAAGAAAAAACTCATCGGCGACACGGAGGTGTACCCCAAGAAAATCGACTACGACAATCACCTGTGCGCGATAGAGAGCGAAGAAGAAGTGGACGACAAAAACGAAAGCGATCTGAGACCAAAATATGAGGAGTGTGCCTTTTGCTTCAAGCCCACGACCAAGAAGAACTCGCAGCGACTCCACGACAGCATCCACAAGGTGTCCGGCGCCATCTCCTGTCGCTTCTGTccgttaaagtttaaaactataGACGCGTTCAACATCCACGCGTTCTCCCATCGCAGCAAGAAATACAATAAGAAACCGATTAAGTGTCGGCAGTGCGGCGAGAAGTTCGTGCGCTATGGCCCCTTCATACGGCACATGAAGATGGTGCACAAGTCCAAGCAAAAATTGCACTACCGTACTATGGTAAAGCCGGAGCCGTGCGTCGTGTGCGGTGACCACTTCCCCAACCTACACAACCACTACCGAGCTCATCTTCAGAACCAGTGTCAGTTGTGTCGCAAGTACTTTACCTCATACAAGGTGTTTTCTTTGCATGAATGCGATAAAGAGGATTCCAATCCTTCGAAAGTGTTCACCTGTGACGAAGACCTCGGGGCTCTCATCAACTCGTACATGCCCAAAGATGAGAAAGATGATGAGAAATTCTACGGCCACAGTGATGATGAGAAAGATATGGAGTTGGAGCCGAATGTTGCTGATATGGATTACACAACACAAGATGAAGAGAGTCAAAATTCTACAGATCTGAATATGCACCAGATGGTCTATGCACCTATCATATCAGATGTTCTATCGCTTTACCAGCAAAAGGAAGAAGTTAACAGCGAACAGGCAAATGATATCGTTGACTTGGTCGACGAAAACAGTCTGGACGGCGAAGATGTTATTAGCGTCATAACTATAGACGATTGA
Protein Sequence: MKELLVSLEPIDSASPPNKLNCEMCTTKFKTIENLEKHMRVVHAAVLKRDNKKLATQDLLISHLAGHMSNMGEEELAKENTCESPVDEMSDSTNYTSTHVPSGPLQCSLCEKRFTYKKALITHEQKHLNGEIEIKAEPSEKDMSSSLLSESYHQSESESSQDEGDDKTCDICEKEFSYKRQLIHHKRTKHNMSSGTKRAKINLKDCTVRCLICDIEMKVSAINEHNQKHITVNIKPRNLYTCAECEEKFKSCSSLATHIKLVHRLKQPQVPKLQRAELADFCEVVVTKTEPLATDQSRDDLVTVPPPHESAPLVNLTGFTCPTCGKQMPTLISLKRHVNWHSNVGNNIEKKLECFVCKEIFRFQCHYRLHMREHYKDTNLDPALLTCTICNRKSKHLRAAQAHMNFHKQTRFKNKDYQCSICKRIFQFRKVYLSHMAIHYKRGESVNNTVVGCEPASATDRKLAGAHTCHHCGKVCDSEISLKHHVIWHKSKTSLFGARHECNICGILFTNKRTLELHNRTHYEDDNGPFKCTICGKGFIDEVYHRKHVKGHNFDNQSHQTRIANLRKDKVKCPICGRFYPDLVKLIRHLRRTHPESKMIKNDPDAPEPSYFSCKLCAKVFLDERRLQHHEEAHLRKPEFFKCKFCGKKTISLKNHRFHIKSHLTQKYLDEPLKCMHCDETFTRGYDLHHHLRDTHDINETWIAERTEKTLNGPLKELQCSICLKILASKGNFERHIDYHNSLRCNYCFDYFSSLRFLEGHLAFSCEKKKLIGDTEVYPKKIDYDNHLCAIESEEEVDDKNESDLRPKYEECAFCFKPTTKKNSQRLHDSIHKVSGAISCRFCPLKFKTIDAFNIHAFSHRSKKYNKKPIKCRQCGEKFVRYGPFIRHMKMVHKSKQKLHYRTMVKPEPCVVCGDHFPNLHNHYRAHLQNQCQLCRKYFTSYKVFSLHECDKEDSNPSKVFTCDEDLGALINSYMPKDEKDDEKFYGHSDDEKDMELEPNVADMDYTTQDEESQNSTDLNMHQMVYAPIISDVLSLYQQKEEVNSEQANDIVDLVDENSLDGEDVISVITIDD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -