Basic Information

Insect: Papilio clytia
Gene Symbol: -
Assembly: GCA_018247735.1
Location: DWGS01009736.1:1-4596[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.6e-06 0.0013 20.5 0.3 1 23 111 133 111 133 0.98

2 8 1.1e-05 0.0027 19.5 2.7 1 23 140 162 140 162 0.98

3 8 1.6e-07 3.8e-05 25.3 2.3 1 23 168 190 168 190 0.98

4 8 9.9e-06 0.0023 19.7 1.4 1 23 196 218 196 218 0.99

5 8 7.3e-07 0.00017 23.3 3.9 1 23 224 246 224 246 0.97

6 8 4.6e-05 0.011 17.6 1.1 1 23 252 276 252 276 0.99

7 8 0.069 16 7.6 2.3 1 23 282 304 282 304 0.96

8 8 4.2e-05 0.0099 17.7 0.7 1 23 310 333 310 333 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.6e-06	0.0013	20.5	0.3	1	23	111	133	111	133	0.98
2	8	1.1e-05	0.0027	19.5	2.7	1	23	140	162	140	162	0.98
3	8	1.6e-07	3.8e-05	25.3	2.3	1	23	168	190	168	190	0.98
4	8	9.9e-06	0.0023	19.7	1.4	1	23	196	218	196	218	0.99
5	8	7.3e-07	0.00017	23.3	3.9	1	23	224	246	224	246	0.97
6	8	4.6e-05	0.011	17.6	1.1	1	23	252	276	252	276	0.99
7	8	0.069	16	7.6	2.3	1	23	282	304	282	304	0.96
8	8	4.2e-05	0.0099	17.7	0.7	1	23	310	333	310	333	0.97

Sequence Information

Coding Sequence: ATGAACAAGGATCTTACGGGGGTGGGGGAGGGTCGGAGGAGTCACGCACGCGCGCTGCCGTCGAGAGTTCACACGCGCTTCGAAACCGCGGTGCGCCTCCACGTGGCGCGCCCGCTCGCCCAACCTTCAGCCGCGGCAAGGAGAGCGGAGGACACTTGCGCCGGCTTCGGCTCGCGAATTCCGCATTCGGCCGTGGACCGTCAGCGAGCGCGCGCTGCCCAGCCGTTTGTATCGCTGTTCGCAACCTACACCAACACTGACGCCATTGAACCGCACCTGACTAACTATCAATCATCATTATCCAATATGATAGGTGAAGAGGAACGCGTGCACCAGTGTGGGGAATGCGGGCTGACGCTGTCTACCCGTAGCGCGCTGACCGCCCACGCCCGCTCGCACCGCGTAGCCGCCGATGCTCACCGCTGCGACGTCTGCCACAAGACTTTCGCTGTGCCGGCGCGGCTCGTCCGCCACTACCGGACCCACACGGGCGAACGACCGTTCGAATGCGAATACTGCCACAAGATGTTCAGCGTTAAGGAGAATTTGCAAGTTCATCGTAGAATTCACACCAAGGAGCGGCCGTACCGCTGCAGCGTCTGTGGCGCCGCCTTCGAGCACTCGGGAAAACTCCATCGTCATGCCCGAATCCACACGGGCGAGAGGCCGCACGCCTGCCCGCATTGTCACAAAACGTTCATTCAATCCGGCCAGCTGGTGATTCATTTGAGAACACACACTGGAGAAAAACCTTATCGCTGTCCTGCGCCGGGCTGCGGAAAAGGATTCACGTGTTCGAAGCAGCTCAAGGTGCACTCCCGCACCCACACCGGCGAGCGGCCCTATACTTGCGACATTTGTCTGCGGGACTTCGGCTACAACCACGTGCTGAAGCTGCACCGCTTCCAACACTACGGCGAGCGGTGTTACCGGTGCACGGTTTGCGACGGTACCTTTAACACAAAGAAGCAAATGGAAGCTCACATATACAAAGAGCATGGAGCGGAATCTCCGCGAGCGACCTCCTCGTTATCCACCGTCCCGATCGTTGGAAATGGTAATGCGATCTGCGACCTTGTGACAGTGGCTTTGCAACAATTGCCGCCGACGCCGCCGAGCTCTCCGCCGTCGCCGCCTTGCACCATTGCGCTCGTCAACGCCGCGTCGCCGTCTCTCATCCCCATATCCGATCCTACCCCC
Protein Sequence: MNKDLTGVGEGRRSHARALPSRVHTRFETAVRLHVARPLAQPSAAARRAEDTCAGFGSRIPHSAVDRQRARAAQPFVSLFATYTNTDAIEPHLTNYQSSLSNMIGEEERVHQCGECGLTLSTRSALTAHARSHRVAADAHRCDVCHKTFAVPARLVRHYRTHTGERPFECEYCHKMFSVKENLQVHRRIHTKERPYRCSVCGAAFEHSGKLHRHARIHTGERPHACPHCHKTFIQSGQLVIHLRTHTGEKPYRCPAPGCGKGFTCSKQLKVHSRTHTGERPYTCDICLRDFGYNHVLKLHRFQHYGERCYRCTVCDGTFNTKKQMEAHIYKEHGAESPRATSSLSTVPIVGNGNAICDLVTVALQQLPPTPPSSPPSPPCTIALVNAASPSLIPISDPTP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -