Basic Information

Insect: Papilio clytia
Gene Symbol: gl
Assembly: GCA_018247735.1
Location: DWGS01005582.1:7694-11573[-]

Transcription Factor Domain

TF Family: zf-BED
Domain: zf-BED domain
PFAM: PF02892
TF Group: Zinc-Coordinating Group
Description: The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 2.6e-06 0.019 16.4 0.1 18 41 251 271 243 273 0.88

2 5 0.061 4.5e+02 2.4 0.2 18 41 279 299 275 301 0.84

3 5 0.0033 24 6.5 1.0 9 38 299 328 291 328 0.75

4 5 0.00026 1.9 10.0 0.6 18 40 335 354 331 357 0.89

5 5 0.11 8.3e+02 1.6 1.3 18 40 363 382 355 384 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	2.6e-06	0.019	16.4	0.1	18	41	251	271	243	273	0.88
2	5	0.061	4.5e+02	2.4	0.2	18	41	279	299	275	301	0.84
3	5	0.0033	24	6.5	1.0	9	38	299	328	291	328	0.75
4	5	0.00026	1.9	10.0	0.6	18	40	335	354	331	357	0.89
5	5	0.11	8.3e+02	1.6	1.3	18	40	363	382	355	384	0.82

Sequence Information

Coding Sequence: atgaACAAAGAATTTAATGAAGAGTTTATCTTCAGCAGGAACAGCGGCGGAGAGTGCAGGGAGCGGGGCGGGGGGGAGGCGGCTGACGTCCTCCTCTCCCTGAAGCACGCAGTGGTGCACGGAGACTGCGCTACAGAGAGCGTTCACCCACAGATGATGGTGAACGGCAGCGGGGGCTACCCGTACTACGAGCACTACGGCGGCGCGCCGCTCTTCCCCACCATGAGCGTCAACGTGTCCATGAACATGACCATGCACGGCTGTCCACCGGACCAGCTCTGTTCACAGGTGCAATGGAACCAGAATGCTTCGACGCCATCGGTAAACGTCGTCTACCCTCAGGCTCAAAACGTCATAAGTCCCACCTCATACCCTTCAGCCACGTATTCCTTCACGGCCGACTTTCGACCGCCCAACCAGTCAGATCCCCTAATCACCGCTACTCCCACTTTCAAACCTCTTCAACTCCAAAACTCTCAGAAAACAAACCCTAACTACTCTTTATTCCAACAAAAACCTAACTTCACCAGTCAGAAGACTGTAGGACCGGTGCTGAAGAGGTCACCTCCAAAGATGTACGTACAGGAAGGTCAGAAAGACCATAACATGGGAAATGGATACACGATATTGAATCACCAGGGTCAGGTGCACTCACAAGACTATGGGTACACGGCGTGTGTTAATTCTTCTGGGAAAGTTCAGGTGGGTGCTCTGAGCGGTTGTTCTGAAGACGACGAGCAGAAGCCGAACTTATGCCGTATCTGCGGCAAGACGTACGCGCGGCCGAGCACGCTGAAGACGCACCTGCGCACGCACTCCGGCGAGCGGCCCTACCGCTGCGCCGACTGCAACAAGAGCTTCTCCCAGGCCGCCAACCTGACGGCGCACGTCCGGACGCACACCGGACAAAAACCGTTCAGgTGTCCCATTTGTGACCGACGCTTTAGTCAGAGCTCGAGCGTGACCACGCATATGCGGACGCACTCCGGAGAAAGACCATAtcaGTGTCGGTCGTGTAAGAAGGCTTTCTCTGACAGTTCGACGTTGACGAAACATTTGAGGATACATTCGGGAGAAAAGCCTTATCAATGCAAACTGTGCTTACTTAGGTTTTCTCAGTCTGGCAACCTGAACCGTCACATGCGCGTCCATGGCAATATGTCAGGCGGGGTGCTTGGCTGA
Protein Sequence: MNKEFNEEFIFSRNSGGECRERGGGEAADVLLSLKHAVVHGDCATESVHPQMMVNGSGGYPYYEHYGGAPLFPTMSVNVSMNMTMHGCPPDQLCSQVQWNQNASTPSVNVVYPQAQNVISPTSYPSATYSFTADFRPPNQSDPLITATPTFKPLQLQNSQKTNPNYSLFQQKPNFTSQKTVGPVLKRSPPKMYVQEGQKDHNMGNGYTILNHQGQVHSQDYGYTACVNSSGKVQVGALSGCSEDDEQKPNLCRICGKTYARPSTLKTHLRTHSGERPYRCADCNKSFSQAANLTAHVRTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYQCRSCKKAFSDSSTLTKHLRIHSGEKPYQCKLCLLRFSQSGNLNRHMRVHGNMSGGVLG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01092264;
90% Identity: iTF_01176347;
80% Identity: iTF_01139715;