Pcly010864.1
Basic Information
- Insect
- Papilio clytia
- Gene Symbol
- -
- Assembly
- GCA_018247735.1
- Location
- DWGS01004251.1:10221-11447[+]
Transcription Factor Domain
- TF Family
- zf-BED
- Domain
- zf-BED domain
- PFAM
- PF02892
- TF Group
- Zinc-Coordinating Group
- Description
- The BED finger, which was named after the Drosophila proteins BEAF and DREF, is found in one or more copies in cellular regulatory factors and transposases from plants, animals and fungi. The BED finger is an about 50 to 60 amino acid residues domain that contains a characteristic motif with two highly conserved aromatic positions, as well as a shared pattern of cysteines and histidines that is predicted to form a zinc finger. As diverse BED fingers are able to bind DNA, it has been suggested that DNA-binding is the general function of this domain [3].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.3 9.8e+03 -1.9 0.2 16 23 42 49 39 53 0.79 2 9 0.00052 3.8 9.1 0.2 11 43 90 119 87 120 0.86 3 9 1.9 1.4e+04 -2.3 0.3 18 28 170 180 157 192 0.72 4 9 0.16 1.1e+03 1.1 0.4 17 27 197 207 182 212 0.83 5 9 0.64 4.6e+03 -0.8 0.2 18 28 226 236 223 248 0.87 6 9 5.5e-06 0.04 15.4 0.4 13 43 251 278 237 279 0.85 7 9 0.0027 20 6.8 2.6 5 24 272 291 272 295 0.91 8 9 0.00021 1.5 10.3 1.8 9 37 305 334 298 334 0.81 9 9 6.3e-08 0.00046 21.6 2.0 12 44 335 364 330 364 0.91
Sequence Information
- Coding Sequence
- ATGAGCACCGTCGAggacaaatataagaaaacggAGATCGCACGTAAGCTGTGCATAAAGAGGCGGAACGTCGAATACGTCCTGCAATACAGCAACGTAACACCATTCATGTGGTACAAGGGGAGGTACAGATGCTTCTACTGCTCGGAACCGATGAAAGATCCAGATCTATTGAGGAAACACACGGCGAAAGTACACCAATTCGCCAATCTAGAACTGGTCGTGTACGACAGGACGAAGAACAACAGGAACAAGGACGCAGCAGTTAAGATAGACGTCACAGAAGTCTCGTGCAAATTGTGCTCCAAGACAGTCAACAATCTGGAGCAATTGATCCATCATTTGATTATCGCCCATGACGCGGAGTACGACGTCAGCATACCAAACTGTCTATTGCCGTTCAAATTGGATAAGGACCAACCCACCTGCCCTATTTGCGATATGAAGTTCGTTTTCTTTGAGTATTTACTCCGTCACGCGAACAAACATCATTTATCTCATGATTACATTTGTGATGTCTGTGGAACCAGCTTCCAAGGGGAGAATCATTTGAAAATGCACAACCGGTACTATCATAGAGAAGGTGGCTACAACTGCGAGCATTGTGGAGTCACGCTAACAACACTATCAAAGAAGATTCTCCACGAGAAGAACGTTCACATGGTCAATCTGTCCACCTGCCCCCATTGTCCGGAGACATTTAAGAGTCCGTACTTCAAGAAGCTACATTTAGCAAACGTGCACGGCGTTGAGGAGTTGAAGATCAAATGCCCGTACTGCCCCAAAGTATACCCGCAGGAGAGTATAATGTCTCGACACATGAGACGGGTCCATTTGCGTGAGAAGAACGTCGAATGCGAGATTTGCGGTGACAGGTTCTTCGGGCCTTACGACGTCAAGTTGCACATGCTAAAACACAACGGTGACAAGAAATTTGTGTGCGCCGTTTGCGGGAAGAGGTTCTCCAAGAAGAACAACCTTAACACCCATTCGATGATACACACGGACAAAGGAAAGATGTCGTGTGAAATTTGCAACAAAGAATTTAGcaatcaacaaaatttaaaagtccATCTTAGGACGAGGCATCCGGAATGCGAAGGTCGAAGCGATTCTTTACAGAATATAGGAGTCATTGATGATTTAAACGATACTGAGATCATACAGATGGAGTTTGTGAAAGACGAACTCGAAGGAGCTGACTTGACCGGAGAATACGTGCATTGA
- Protein Sequence
- MSTVEDKYKKTEIARKLCIKRRNVEYVLQYSNVTPFMWYKGRYRCFYCSEPMKDPDLLRKHTAKVHQFANLELVVYDRTKNNRNKDAAVKIDVTEVSCKLCSKTVNNLEQLIHHLIIAHDAEYDVSIPNCLLPFKLDKDQPTCPICDMKFVFFEYLLRHANKHHLSHDYICDVCGTSFQGENHLKMHNRYYHREGGYNCEHCGVTLTTLSKKILHEKNVHMVNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCPKVYPQESIMSRHMRRVHLREKNVECEICGDRFFGPYDVKLHMLKHNGDKKFVCAVCGKRFSKKNNLNTHSMIHTDKGKMSCEICNKEFSNQQNLKVHLRTRHPECEGRSDSLQNIGVIDDLNDTEIIQMEFVKDELEGADLTGEYVH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00958198;
- 90% Identity
- iTF_01139716;
- 80% Identity
- iTF_01139716;