Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 3 3.6e-11 2e-07 32.0 0.0 3 39 78 114 76 119 0.88

2 3 1e-12 5.9e-09 36.9 0.4 2 39 131 168 130 171 0.93

3 3 4e-09 2.3e-05 25.5 0.1 2 30 186 214 185 214 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	3	3.6e-11	2e-07	32.0	0.0	3	39	78	114	76	119	0.88
2	3	1e-12	5.9e-09	36.9	0.4	2	39	131	168	130	171	0.93
3	3	4e-09	2.3e-05	25.5	0.1	2	30	186	214	185	214	0.95

Coding Sequence: AGCTTCGAGACCCTCGAGCCCGCTCGCGCAGTTACTGCTGGCACCACACTCCTGGACCGCCACAAGCTGCTGCTGGCTGCCGGCGCCGCGGAGCCGGACTTCATTCCTCTGCTGCCCGTAAAGGATGAACCGCTGTCGGAAGGGGAGCCGGTGCTGAGCGACGGGGCGAGCTCGTGCGGCGGCAGCAGCGACGGCGCAGAGGCGCGCGGCAGCCCGCGCGGCTGGGGCCCGCGCGACATGCAGCGTGCGCTGCAGGCGCTGCGTGACCGCCGCATGACCCTCACCAAAGCGTCGGCGACATACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGCTGGGCATTGACACGCCGAAGCGCGAGGCCGCCGCCAAGAGCTGGGGCGAGGCAGAGCTGCGCGCCGCTCTCGCTGCCCTGCGCGCCGGCACGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGTATACCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGACTGGCGGCGCCGTTCAACGCGGCGCCGACCAGCTGGCGGCGCGGCGACCTGCAGCGCGCGCTGGCCGCCATCCGCTGCGGCGCCGCCTCCGTGCAGCGCGCCGCCGCGGACTACGGCATTCCCACC
Protein Sequence: SFETLEPARAVTAGTTLLDRHKLLLAAGAAEPDFIPLLPVKDEPLSEGEPVLSDGASSCGGSSDGAEARGSPRGWGPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRLGIDTPKREAAAKSWGEAELRAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTSWRRGDLQRALAAIRCGAASVQRAAADYGIPT

Sequence clustering based on sequence similarity using MMseqs2