Basic Information

Insect: Papilio bianor
Gene Symbol: -
Assembly: None
Location: HiC:1206780-1209415[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0031 0.2 12.0 1.3 1 17 268 284 268 291 0.90

2 12 3.4 2.2e+02 2.4 1.1 5 17 336 348 334 354 0.84

3 12 0.0034 0.22 11.8 3.1 2 23 365 387 364 387 0.95

4 12 0.00017 0.011 15.9 1.5 1 23 392 414 392 414 0.98

5 12 0.011 0.73 10.2 1.9 2 23 436 458 435 458 0.94

6 12 0.0043 0.29 11.5 1.0 1 23 462 485 462 485 0.97

7 12 0.13 8.6 6.8 0.4 2 23 508 530 507 530 0.90

8 12 0.0051 0.34 11.3 1.6 1 23 540 562 540 563 0.95

9 12 0.0069 0.46 10.8 1.2 5 23 582 600 580 600 0.95

10 12 0.053 3.5 8.1 1.0 1 23 606 628 606 628 0.92

11 12 0.11 7.3 7.1 2.9 1 23 634 658 634 658 0.92

12 12 1.1e-05 0.00072 19.7 0.9 2 23 710 731 709 731 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0031	0.2	12.0	1.3	1	17	268	284	268	291	0.90
2	12	3.4	2.2e+02	2.4	1.1	5	17	336	348	334	354	0.84
3	12	0.0034	0.22	11.8	3.1	2	23	365	387	364	387	0.95
4	12	0.00017	0.011	15.9	1.5	1	23	392	414	392	414	0.98
5	12	0.011	0.73	10.2	1.9	2	23	436	458	435	458	0.94
6	12	0.0043	0.29	11.5	1.0	1	23	462	485	462	485	0.97
7	12	0.13	8.6	6.8	0.4	2	23	508	530	507	530	0.90
8	12	0.0051	0.34	11.3	1.6	1	23	540	562	540	563	0.95
9	12	0.0069	0.46	10.8	1.2	5	23	582	600	580	600	0.95
10	12	0.053	3.5	8.1	1.0	1	23	606	628	606	628	0.92
11	12	0.11	7.3	7.1	2.9	1	23	634	658	634	658	0.92
12	12	1.1e-05	0.00072	19.7	0.9	2	23	710	731	709	731	0.97

Sequence Information

Coding Sequence: ATGTCATCTCAAAATAATATAATTAATACGAATGATGCTTGCAATAATCATTTAAATGAAACCATTATAAAAGAAGAAAATAACGTAGATGAAGAACATATACAAGTAAAATGTGAACTAATCGATGAAAACGAAACAGCTGAGAATTACGAAAATGTACAAATTAAACAAGAGTATACAACATCTAATGAAAACCAAACACAAGAAATGAGCTATGAAGTACCCATAGCTAAAGAAATTACTGATGATTTGCCAGAACTTCCAACGGAACATTGTAATAACAAAGTAAATGTAACTAATGTATATGATGATAATATAGAAATAAAACAGGAAAGTGATATATTGGATGATGTTAATAATGAAGGCAGTACCGACAGTAATGATGCAGAAGCATTACATAATGTTGAGGCTTGTCTGCAAGATGATATGAAAATTAAATTGGAAGTTGAATCAATTGAGGAAAATCAAAATGATGTTTTGGAGTTTATGGCCATCAAGAATGAAATTGATTCAACAGATACGGAAACTAATTTAATATCAAATGAAATAATTCCTACTAATTCACAAGTTGGAATAACAAATTCACAACCAGCTAGCACTTTGTTTATGGAAATATTGCCTATGGATGTCTACTCTGGAGTGCCACTCGGTAAAGTTGGTAATCCAGAAGAAATTTTATCCACATCCTATGACAGTGATGCTATAGCCGATTCCTTTCAACTGAACTCAATAACTGGCAATATGATGACTTTAGAACAAGAAGCTTACGGACTTTTAGAAGCTAAAAAGACAGATAAGATTTATACATGCTCAAAATGTCCGAAAACATTCAAAAATCTTGCATACCTTTCAAATAATCACGAAAAATACCACCAGGCTAAGGAAAAGCGTGAATTGTCGAGAGCAAAGAGGTTAAAATTGAAAAATGCGAATCCGGTTAAAAAAGAAACAAAGGTAACTAAAGTAGAACCCAAAGTTGATTATAATAAGGATGGCTACGAGTGCACTTGTGGTAAAACATTCCAACGAAAGACACGATTGGAGACTTGTTTACGTTCGCACAATACAATAAAAGATGCCAATTCCTTTTTGCATTGCGGCACATGTTTTAAACAGTTTAAAGATAAGGAGGAATTACTTCTGCACAGGAAGCGAATGCATAGGAAGACTATGTTCCCATGCAAATTTTGTCCCACAGACTACAAGAGTAGGAAAGAATTATTCAAACATTTACAAATACATCAGAAAGTTCAAGTGATGGAGTACAAAGTGTTATCGGAAGTAGTGAAAGGAAAACAGAAGTTGAAATGTTTTATGTGTGCAAAAACTTGTACAGAACTATCGGAATTGAAGACTCATGTTATGTATGACCATAAGGAACCTTACGTATGTCCACATTGCAATGGAACCTTTTCCAAAATAATAGATTTTGGAAATCATACAAAAACTGACCACCCGGAAGTGGAAGGACAGTCGGTGTTAGATGTTTTGGAAGCGTTTTCTAAATTAATGAAAGCTTGGAAATGTGAAGATTGTAATGTTCAGTTCCATGAAGCGGATAAACTAGCGTTACATAAGATTGAAAAACACAGCAGTAACTTGAAAGTGGAGCCTCAATTCCAGTGTATTGATTGCCGAAGAGTTTACGTAACTCTTAAAGGATTAATGTCACATAGACGCATTCATCACGTCACAGATAACATGGAAGATTCTGGAATGCATGAAAAAGGCGTCCTGTGTATAGAATGTAGAAAGGTTTGTAGGGATATGGATGCTTTAACGTCGCATATGCGTTTACATTCACCGGAGAGGAAGTATCGGTGTAAGTTTTGTGATTTTCGATTCGCATCAATAGAAAAGAGGAAGGCCCACGCGGAACTGCACACGGGAGACATGAAATATGTCTGCTTTATATGCGAATACAGATGCAGTTCTGTGAATCGTTTGCAACAGCATAAAAGATCAGCGAAACATTTAAGTATGAAAGATTTCTTGTCCACTGGCAAAGATTTAGGGATTGCACAATCGACATCTAAAACTGAAAGCGATCGAAAAGAGGAGTGGATGGTGGTGAACGATGATGAACATGATGAAAGTGGTGATGATTCGTCAAACGAAGGTGAAGTGACCTGTGATATTTGTGGACAAACTTTCAACACATTGTCCAAAATGTTGACCCACCAAAAGACGCATCCGTTCATAGAAATAACGAACGAGGATAAGCCGACGAGAATATTTTTTAAATAA
Protein Sequence: MSSQNNIINTNDACNNHLNETIIKEENNVDEEHIQVKCELIDENETAENYENVQIKQEYTTSNENQTQEMSYEVPIAKEITDDLPELPTEHCNNKVNVTNVYDDNIEIKQESDILDDVNNEGSTDSNDAEALHNVEACLQDDMKIKLEVESIEENQNDVLEFMAIKNEIDSTDTETNLISNEIIPTNSQVGITNSQPASTLFMEILPMDVYSGVPLGKVGNPEEILSTSYDSDAIADSFQLNSITGNMMTLEQEAYGLLEAKKTDKIYTCSKCPKTFKNLAYLSNNHEKYHQAKEKRELSRAKRLKLKNANPVKKETKVTKVEPKVDYNKDGYECTCGKTFQRKTRLETCLRSHNTIKDANSFLHCGTCFKQFKDKEELLLHRKRMHRKTMFPCKFCPTDYKSRKELFKHLQIHQKVQVMEYKVLSEVVKGKQKLKCFMCAKTCTELSELKTHVMYDHKEPYVCPHCNGTFSKIIDFGNHTKTDHPEVEGQSVLDVLEAFSKLMKAWKCEDCNVQFHEADKLALHKIEKHSSNLKVEPQFQCIDCRRVYVTLKGLMSHRRIHHVTDNMEDSGMHEKGVLCIECRKVCRDMDALTSHMRLHSPERKYRCKFCDFRFASIEKRKAHAELHTGDMKYVCFICEYRCSSVNRLQQHKRSAKHLSMKDFLSTGKDLGIAQSTSKTESDRKEEWMVVNDDEHDESGDDSSNEGEVTCDICGQTFNTLSKMLTHQKTHPFIEITNEDKPTRIFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -