Pbia006043.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- Imp3
- Assembly
- None
- Location
- HiC:127071-143016[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00066 0.044 14.1 0.1 1 23 321 344 321 344 0.94 2 8 4.8e-05 0.0032 17.7 1.3 1 23 424 446 424 446 0.97 3 8 0.00019 0.013 15.8 2.0 2 22 457 477 457 481 0.92 4 8 0.00021 0.014 15.6 0.2 1 23 519 541 519 541 0.97 5 8 0.0013 0.089 13.1 0.4 2 22 550 570 549 574 0.90 6 8 1.2e-05 0.00083 19.5 0.6 1 23 582 605 582 605 0.91 7 8 0.0015 0.097 13.0 5.7 1 23 611 634 611 634 0.95 8 8 0.052 3.4 8.1 0.1 3 11 643 651 641 655 0.83
Sequence Information
- Coding Sequence
- ATGGTTCGTTCATTGAAATTTCACGAGAAAAAATTACTTAAAAAAGTAGATTTTATATCATGGAAAGTAGACAACAATTTAAGCGAAGTAAAGGTTATGAAGAAATATTACATACAGAAACGTGAAGATTATACACTGTACAATGTGCTGTCTAGGGATATAAGAAATATTGCCAATAAAGTCAAAGATTTGGACGCAGGATCAAATTTCAGAACAATGTCAAGTGCACGTCTTTTAGAAAAGTTGTACCAAATGGGTTTGATACCAACACGATGGGATTTAGCTCTCGCTACAAATGTCTCTGCCAGTTCATTTTGTAGGCGCAGGCTACCCGTGGTCATGCTTAGAAATAAAATGTCAGAGAACTTGAAAGAGGCAACAAAATTGATTGAACAAGGTCATGTGAGAGTGGGGGCCCAGCTAGTAAAGAATCCATCATTTCTTGTGACAAGAGCATTGGAAGATTTTGTCACATGGGTAGATTCATCCGCCATTAAAAAACAAATTATGGAATATAATGATATGGTAATGCAGACTGAAAGCATACCAATGTCTCTATGTTGGGAGTGTGATGCAATTATGTCTCGCTTTACTAAATTCAAACGAAGAGTTTTGAGCAACTTTGCAATATTTCAGGACTATTTTAAACAGAATTTAGATTTAACGCTTATAAAGGGAACTTCCAATTTGGTCACACATAAAATAATAGATGTATATTCTTATAATTATATTCATGAAATTAAAGCAGAAAAATCATGGGATGTGACCATAGACAAAATTAAAAGCGAAGCAAGTTCAGACAATTCCGATGATAAAGAACCGTTGATAGAAATTAAAAGGAAAAAGAAAACAAGTAAAAATAGTAACACAGAAGTGTACAAAGAGATTGAATTAAGTGTAGAAGAATTGAATGATGAAAGAAGACTGTTGTCTTGTAAAGAAGAATTTATTAATGCGGTTTATAAATGTGAAGATTGTATCACAGTATTTCCAAATGCAGATGATTTGAAAGATCATATCTATTTGAAACATGAAGTGAAAGAATGGGAAAGGAAAGTAGATTTGACGCATAAGAAAGGGGGATATACTCTTTTCGTGCGTCTCCTCCGTCAATTAAAGGAAGGCAACGCAACTGCAATAGCAGATGTCTATGGGCAGTCGCTGTACAGCGATTTCAGTGTAGATTACAATTATGAAATGGAAGAAAAATTAAATGGGGAACGAGAGGAAATAGAAGATATTCAGATTAATCGTACAGAACAACCATCTTTTCCATGTGAATTGTGTGATAAAACATTCCGATGGAAGACATCTTTGCGGAAGCATTTAGAAAAGCATCGGATAGAGACGGGACAGAAAAGGAAGCCGTATTGTGAAACATGCAGATTGTCATTCACGACTACATCTAATTTACAAAAACACGTAAAAACCAGCTCAAAACATCAGATATTGTTAAAAGTCAGGAACTTAAAAGATTCTCCTCTAGAAGATACAGAGAAGAATAAAGACATGATAGAAGAGATTAAAGCGTCAGTTAACAAACAAAGGGAGACGTTTCCTTGTCCGCAATGTGACAAGAAGTTTCAATGGAGAGGGAATCTTGCGAGACACTTGGATAGTCATAATGCTAGAGCGAAAGGTGATTTAGTTTGCGAGCCGTGTAACAGAACATTCTCTTCTAAGGCCACGTACGAACAACATATGAAAGTCAGTATGCGACATGTCTCTGAGAATGATTTTAAATATATGTGTAGCGAATGCGGGAAACGTTTCTCAAATAAGACCAGATTACGTGATCACGTGGATTGGGAACATTTGAAGAATTACGTACACAAGTGTACGGAGTGTCAAAAGGTATTTAAAAGTCACACATCTCTTTACCTTCATAAACAGAATGTCCATGAAAAAGATCAAGCTGGACATTTGTGTCATCACTGCGGGAAGGCTTTCCCGGGATGGGAAGGGGAAGTGGACTTGAAGAAGAATGATACGCATAGAAACAAGAAATATTCCCTTTCAGTGAGTCTCCTTCGTCGATTAAAGCTAGGCAACGCATTTGCAATTACGGATGTCTATGGGTAG
- Protein Sequence
- MVRSLKFHEKKLLKKVDFISWKVDNNLSEVKVMKKYYIQKREDYTLYNVLSRDIRNIANKVKDLDAGSNFRTMSSARLLEKLYQMGLIPTRWDLALATNVSASSFCRRRLPVVMLRNKMSENLKEATKLIEQGHVRVGAQLVKNPSFLVTRALEDFVTWVDSSAIKKQIMEYNDMVMQTESIPMSLCWECDAIMSRFTKFKRRVLSNFAIFQDYFKQNLDLTLIKGTSNLVTHKIIDVYSYNYIHEIKAEKSWDVTIDKIKSEASSDNSDDKEPLIEIKRKKKTSKNSNTEVYKEIELSVEELNDERRLLSCKEEFINAVYKCEDCITVFPNADDLKDHIYLKHEVKEWERKVDLTHKKGGYTLFVRLLRQLKEGNATAIADVYGQSLYSDFSVDYNYEMEEKLNGEREEIEDIQINRTEQPSFPCELCDKTFRWKTSLRKHLEKHRIETGQKRKPYCETCRLSFTTTSNLQKHVKTSSKHQILLKVRNLKDSPLEDTEKNKDMIEEIKASVNKQRETFPCPQCDKKFQWRGNLARHLDSHNARAKGDLVCEPCNRTFSSKATYEQHMKVSMRHVSENDFKYMCSECGKRFSNKTRLRDHVDWEHLKNYVHKCTECQKVFKSHTSLYLHKQNVHEKDQAGHLCHHCGKAFPGWEGEVDLKKNDTHRNKKYSLSVSLLRRLKLGNAFAITDVYG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -