Pbia003028.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- Nop60B
- Assembly
- None
- Location
- HiC:7330866-7343515[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 1.5 1e+02 3.5 0.5 2 23 592 614 591 614 0.89 2 9 0.044 2.9 8.3 1.1 1 15 621 635 621 641 0.87 3 9 0.0002 0.013 15.7 1.3 1 23 651 673 651 673 0.98 4 9 2.6e-05 0.0017 18.5 3.5 1 23 686 708 686 708 0.98 5 9 2.4e-06 0.00016 21.7 1.4 1 23 715 737 715 737 0.98 6 9 4.4e-06 0.00029 20.9 3.9 1 23 743 765 743 765 0.98 7 9 3.5e-06 0.00023 21.2 1.3 1 23 771 793 771 793 0.99 8 9 0.0012 0.078 13.3 0.3 1 23 799 822 799 822 0.95 9 9 0.0005 0.033 14.4 0.2 1 23 828 851 828 851 0.91
Sequence Information
- Coding Sequence
- ATGACGGAAGTATTGCAACCTGGTACCGAAGTGTTTTCTGAGAAAAAGAAGAAGAAAAGCAAGGAGCAAGTGACGCTGGGCGCATTTCAAAAACTTGGCGACTTTAAAATCGAACCTTCTGAATGTGTAAGCAAATTAGATACGGCGTATTGGCCCTTATTATTGAAGAACTTCGATAGACTAAACGTACGCACTAATCATTATACACCTTTGCCGTTCGGTCATTCCCCATTGAAGCGTCCGATTTCAGATTATGTTAAGTCAGGATTTATTAACGTGGACAAGCCAAGTAACCCGAGTTCTCATGAAGTTGTGTCATGGATTAAACGCATACTTAAAGTCGAAAAGACCGGACACAGCGGCACACTCGATCCGAAGGTAACAGGTTGCTTGATCGTGTGTGTAGACCGAGCCACGAGGTTGGTTAAATCCCAGCAGAACGCCGGTAAGGAGTATGTGGCGGTGTTCAGCCTGCATTCAGCTGTAGAAAGTATAAAAAAAGTAACACAAGGCCTTGAGAAACTCCGTGGTGCTTTATTCCAGCGTCCTCCGCTTATTTCTGCTGTTAAGCGACAACTTCGTGTCAGATCTGTATATGATAGTAAACTTCTGGACTTTGATGAGGAAAAGAACATTGGTGTATTCTGGGTTAGTTGCGAAGCTGGATCTTATATCCGTACAATGTGTGTACATTTGGGTTTGATGCTCGGTGTTGGAGGACAGATGATAGAGCTCCGTAGAGTACGCTCTGGTATTCAAGGGGAAAAAGAAGGCATGGTGACTATGCATGATATCTTAGATGCTCAATGGGCCTATGAGAATCACAAAGACGAAACTTACCTGCGTCGCGTCATCAAACCTCTGGAAGGTTTGTTAGTGGCACATAAAAGAATATTTATCAAAGACAGTGCGGTTAATGCTGTGTGCTACGGTGCTAAAGTCCTTCTACCTGGTGTATTGAGATACGAAGATGGTATAGAAATTGATCAAGAAATAGTTATTGTAACAACGAAAGGTGAGGCAGTGGCACTAGCTGTCGCTCTCATGACGACAGCAACAATGGCGTCCTGTGACCATGGCGTAGTTGCTAAATTAAAACGGGTAATCATGGAAAGAGATACTTATCCAAGAAAATGGGGATTAGGACCAAAAGCGTCACAGAAAAAGCTATTAATCCAATCAGGTAAACTAGACAAATACGGTAAACCGAATGAGAACACACCAGCTGAATGGCTAAATAGTTATGTAGACTTTAAGGGAAAGAAACCAGCAGATAAAGAAGAAAATGGTGACAATGAGATGGATGTGGACAGTAGAAAACGTACAGCGAGTACAGCAAATGCTGATGATCCTAATAATTCAGTAGAGGCGAAGGCAGAGAAGAAGAAGAAAAAGAAAAAGCGCGATCAAGAAGAGAATGAACCTGATACAACAGTAGAGGCAGTGGCAGAAGAACAAACGGCAGATGATTCTGTCCGTAAAGAGAAGAAGAAGAAAAAGAAGAAGGACAAAGACAATGAAAGACAAGAAGACGAAACCGATAAAAAACTACGTGAAATTTTAGATGGCAAAAGAAACGATAATACAGACGAAAGTTTCGCTGTTAAATTAGAAAACAATGCATTTGAATTGGATAATTCTGAATATTTCGACACTTATTTTAATGATTTGGGCAACTCTGATGTCATTTTAGAATCAGAAACATTGCCTAAACACGTAAAGGATAAAAAAATAAAAATCAAATCAAATTACAAGCCAGTACGTACACCAACATATTGTAATATCTGTAGAATTGATTATAAAACTGTTGAAAGTTACAGTGAACATAATTCTTCATACCATGGCATTGAAAATGGATTATACAAGTGTTTTGGCTGCGAAAAGAAATTTAAAAGTAGAAAAACTAGATTGGGACACGAGATTAACTTCTGTAAAGGATTAAAGGATGGATATAAATGTAATATTTGTAACAGATATCTACCTACACGGAGAACATATGAAAACCATATGAGAGCGCATCGCGATAATGTTGATGTAGAGATAACTGATGACGTATTTAAATGTTTAAAATGCTATAAATTATTTAATACAAAAACAAATTTAAAGAAACACATGGAAGTACATGATAGTGAGAAAAAGAACTTTGTTTGTGAGAGTTGTGGTCGTGTGTTTACTCGGCAGGATTATTTATACAAACATAAACTGACACACACAGGAGTGAAACATCATGTGTGTCCGCATTGTGGCTTCCGAACAACACAGAAGTCGTCCCTCACTGTACATATAAGGAAGCATACCGGGGAGCGTCCATACGTGTGTGACGTGTGCCCGCAACGTTGCGTGTCCAGCTCTAATCTGCGCGCACACCGACGCCGGCATCTCGGCCTCAAGAACTACGAGTGTACAATTTGTAGCAAGAAGTTCGGTTATAAGGTAAGTTTAGACGAGCACGTTGCGTCCACGCACGAGCGTGCGCACAGCCACGCCTGCGGACAGTGTGGAGCTGCGTACACGCGGCCGCGTGCGCTGCGTCGCCATGTCCTCGCGAAACATGCCCAAGTCAATACAGACTTGTCTGTCAAAGTAACTGACGAAGAGAAAGCTGGAAATCCGGAAAATAAGACTCAAGATGTATTTATTGTATAA
- Protein Sequence
- MTEVLQPGTEVFSEKKKKKSKEQVTLGAFQKLGDFKIEPSECVSKLDTAYWPLLLKNFDRLNVRTNHYTPLPFGHSPLKRPISDYVKSGFINVDKPSNPSSHEVVSWIKRILKVEKTGHSGTLDPKVTGCLIVCVDRATRLVKSQQNAGKEYVAVFSLHSAVESIKKVTQGLEKLRGALFQRPPLISAVKRQLRVRSVYDSKLLDFDEEKNIGVFWVSCEAGSYIRTMCVHLGLMLGVGGQMIELRRVRSGIQGEKEGMVTMHDILDAQWAYENHKDETYLRRVIKPLEGLLVAHKRIFIKDSAVNAVCYGAKVLLPGVLRYEDGIEIDQEIVIVTTKGEAVALAVALMTTATMASCDHGVVAKLKRVIMERDTYPRKWGLGPKASQKKLLIQSGKLDKYGKPNENTPAEWLNSYVDFKGKKPADKEENGDNEMDVDSRKRTASTANADDPNNSVEAKAEKKKKKKKRDQEENEPDTTVEAVAEEQTADDSVRKEKKKKKKKDKDNERQEDETDKKLREILDGKRNDNTDESFAVKLENNAFELDNSEYFDTYFNDLGNSDVILESETLPKHVKDKKIKIKSNYKPVRTPTYCNICRIDYKTVESYSEHNSSYHGIENGLYKCFGCEKKFKSRKTRLGHEINFCKGLKDGYKCNICNRYLPTRRTYENHMRAHRDNVDVEITDDVFKCLKCYKLFNTKTNLKKHMEVHDSEKKNFVCESCGRVFTRQDYLYKHKLTHTGVKHHVCPHCGFRTTQKSSLTVHIRKHTGERPYVCDVCPQRCVSSSNLRAHRRRHLGLKNYECTICSKKFGYKVSLDEHVASTHERAHSHACGQCGAAYTRPRALRRHVLAKHAQVNTDLSVKVTDEEKAGNPENKTQDVFIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -