Pbia003099.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- Zfa
- Assembly
- None
- Location
- HiC:1761884-1775444[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.36 24 5.4 1.1 1 13 188 200 188 202 0.88 2 10 0.0019 0.13 12.6 2.9 1 23 205 227 205 228 0.96 3 10 5.2e-05 0.0035 17.5 2.9 1 19 259 277 259 280 0.95 4 10 0.00017 0.011 15.9 1.0 2 23 288 310 287 310 0.97 5 10 0.00023 0.015 15.5 2.1 2 23 324 345 323 345 0.96 6 10 0.0082 0.54 10.6 1.6 1 21 351 371 351 376 0.94 7 10 4.6e-06 0.0003 20.9 0.5 1 23 384 407 384 407 0.97 8 10 6e-06 0.0004 20.5 0.6 1 23 413 436 413 436 0.97 9 10 1.7e-06 0.00011 22.2 0.3 1 23 445 467 445 467 0.98 10 10 2.6e-05 0.0017 18.5 1.1 1 23 473 496 473 496 0.96
Sequence Information
- Coding Sequence
- ATGTTATATGAAACAAAGGTTGATGAACTATCTCTATGTTATATATGCAAGAAACTCATACAGAACGCAGAATTTCTGATAGAGAAAATTCTTAATAATCAAATCACAGTCAATTTACAAAATTTTTCAGAACAAAATTCAGATGTTACGGTTCATCCATTCTTAAATGTAACAGTATTAGAGCCCATTGATATATCTGGTATTGATGAACAGACAGAAAATCCAACTTCTGTAGATGAAAATAGTGTCTATAAAGAATGTATTGTTAAGGATGAAATGAAAAGTGAATCTGAAGATTGTATGCAGAGTGATTATAATAATTTTATAGATATAGAAATAGATGTAAAAAATGAATTTTTAGTCAATAATGGTGAAAGTGAAAGTCCTGATGAAATGGGAGAAGCAAATAAGCCAGTTAAAAAGAAACAAGAAACAAAAAGAGGTAGAAAAAGAAAGAATACAGAAGAACAACTTTCAATTCGGTCGATTTATATAAATGAAGAACAATTAATGCAAGAAAGAAAAATTAAGGCAAATGAACAAACATACATAAATTGTACTTATAAGTGTGAGGATTGCGTAAAAGGTTTTGCGTTTAAGGATAAAGGTGATTATGAATGTAATATATGTAAACAAAGAACGGATACGAGTATTAAATTATTGCGGCATACAAAATTACACCATATTCGTTTTAAATGTTTAATCTGTGGTGTCGTACAAAAGGCAACTATGAGAGATCATTATAATTCGTGTCATTCCGAAAATGCGGTACTTTACACGTGTAAAACATGCCCCAGGAAATTTACTGACCGATATTATTTAAGAAAACATGCCTCTCACTGTCGTAAAAATAAGCGAGTACAATGCGAACATTGCATGAAGACGTATGCAAATAAAGACGGACTCAAAATTCATATACAAATGAGACATCCATCATTACTACCTCCAATAGAAATAAATAATACAGTGTCGTGTAAAGAGTGCGGCAAAGCTTTCCGATGTCCGTCACAATTGAGGTCACACAGCCTCAAACATTCATCGGAGAAAAGGTTCTATTGTGTGGAATGCGATAAAAGTTATAAATGTGAATACACATTAAAACAACATTTAAAATTGGCAGCGCCACACGCCAACCCCAGTGAGTTACATTTTCCCTGTACGATGTGCGACAAAAGATTCGGCATCAAACGCGACTTGGAACGCCACATGAACAGGATTCATCTCAATATACGACCTTATAAATGTGATTTGTGTGAAAAGGCATTCAACAATAGTTGGGGCTTAAAGAAACATAAAATGATTTCACACGAGGGTTATAAGAGGCCGTTCATCTTCCCTTGTACTGTGTGTGATAAGATATTTGATCAAAAATCAATACTCAAAGCGCACATCCGAACACATACTGGTGAGCGACCGTACCAGTGTACCAGGTGTCCGGCGAAGTTCACACAGTCCAGTAGTCTCAGCACCCACACAAAACTGGTACATCTCAAGCAAACGAGAGATGGAAAACCTAAAAGCCTCAAATAA
- Protein Sequence
- MLYETKVDELSLCYICKKLIQNAEFLIEKILNNQITVNLQNFSEQNSDVTVHPFLNVTVLEPIDISGIDEQTENPTSVDENSVYKECIVKDEMKSESEDCMQSDYNNFIDIEIDVKNEFLVNNGESESPDEMGEANKPVKKKQETKRGRKRKNTEEQLSIRSIYINEEQLMQERKIKANEQTYINCTYKCEDCVKGFAFKDKGDYECNICKQRTDTSIKLLRHTKLHHIRFKCLICGVVQKATMRDHYNSCHSENAVLYTCKTCPRKFTDRYYLRKHASHCRKNKRVQCEHCMKTYANKDGLKIHIQMRHPSLLPPIEINNTVSCKECGKAFRCPSQLRSHSLKHSSEKRFYCVECDKSYKCEYTLKQHLKLAAPHANPSELHFPCTMCDKRFGIKRDLERHMNRIHLNIRPYKCDLCEKAFNNSWGLKKHKMISHEGYKRPFIFPCTVCDKIFDQKSILKAHIRTHTGERPYQCTRCPAKFTQSSSLSTHTKLVHLKQTRDGKPKSLK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -