Pbia004172.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- salm
- Assembly
- None
- Location
- HiC:6439532-6455421[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.27 18 5.8 1.9 1 21 33 53 33 54 0.94 2 11 3.8e-06 0.00025 21.1 0.9 1 23 356 378 356 378 0.98 3 11 7.6e-06 0.0005 20.2 2.1 1 23 384 406 384 406 0.98 4 11 1 67 4.0 3.0 5 23 704 722 701 722 0.92 5 11 1.5e-07 9.8e-06 25.5 0.7 1 23 728 750 728 750 0.97 6 11 0.0015 0.1 12.9 6.4 1 23 760 782 760 782 0.98 7 11 0.0016 0.11 12.8 1.9 2 23 982 1003 981 1003 0.97 8 11 0.023 1.5 9.2 1.6 1 14 1009 1022 1009 1023 0.94 9 11 0.6 40 4.7 0.0 10 23 1050 1063 1048 1063 0.93 10 11 3.4e-06 0.00023 21.2 1.7 3 23 1148 1168 1146 1168 0.96 11 11 4.1e-07 2.7e-05 24.1 0.5 1 23 1174 1196 1174 1196 0.98
Sequence Information
- Coding Sequence
- ATGACTGTGAAAAAGCAATGTGAAAGTTCCGGCTCTTGTTCAGAAGAGGAAATAAACAATGTCTTACACGCGGAAGCGAGACATCAACCGGAAGCACACATGTGCCCGCGGTGCCAGGAACAATTCGAAAATCTACACGAATTTCTGTATCACAAAAGACTTTGCGATGAGAAGGCAATTCAAATGGGTGAAGAGAGAATGCACTCTGATCCCGAAGAAATGGTCGTTTCGGGCGATGAAGAGATGGACGGGCCCAATAAACGGTTAGAGCAAGTACGAAGGCATCGCCAAGACGCTGAAAATAATAACAGCCTCGATGACGGCGAAGCAGAAGTACCGGAGGCCGACGTCCCGCCCGTGGGATTGCCTTTCCCGGTAGCCGGCCATGTGACGCTTGAAGCCTTACAGAACACGAAAGTAGCCGTCGCTCAATTCGCCGCGACCGCGATGGCAAACAACGCAGATAATGAAGCGGCATTGCACGAGCTCGCCGTTCTGCAGAGTACGTTGTTTACACTGCAGCACCAGCAAGTGTTTCAGCTACAACTGATACGTCAACTACAGAACCAACTGTCACTAACACGACGAAAAGATGAGCAGCATCCGAGCCCACCGCCCCATGAGCCCGAGCCCGCCGAGCCCGCCGCGCCTGCGCCGCCGGCCCCGTCGCCGTCGCCGCCGCGTCCGCCACGGGAGCCTTCCCCCGTACCCACTCCCCCTATGAGCCAAACCTTGCCATCAACTCACGGTCACCTCACGCCCAGACCAGAACCGATCACCATTCCCAAGCTCCCGACCTCGTCGCCGCCCATGATGACTCACCCGCCATATAGCTCCATATCGTCATCATTAGCGTCTTCGATCATTACGAACAACGATCCACCGCCATCCTTAAACGAGCCTAATACTCTGGAAATGCTACAAAAGCGAGCACAAGAAGTTCTCGACAACGCATCCCAAGGCCTGCTGGCCAACAACCTCGCCGACGAACTTGCTTTCCGTAAATCTGGAAAGATGTCGCCCTACGACGGGAAGTCCGGAGGGCGAAACGAACCTTTCTTCAAACATCGATGCCGGTACTGCGGGAAGGTTTTTGGTAGTGACTCTGCGCTGCAAATCCACATTCGATCGCATACAGGTGAAAGACCATTTAAGTGTAACGTTTGTGGATCTCGATTTACAACCAAAGGCAACTTAAAAGTTCATTTCCAAAGACATACTGCGAAATTTCCGCATGTAAAAATGAATCCTAATCCGATACCGGAACATTTGGATAAGTACCATCCTCCATTATTAGCACAGCTGTCGCCGGGGCCGATTCCTGGAATGCCACCCCATCCACTTCAATTCCCTCCGGGTGCGCCAGCGCCTTTTCCGCCAAGCTTGCCGTTATATAGACCACCGCACCACGACTTACTACCGCCGCGCCCGCTCGGCGATAAACCTCTTCCCCCGCATCCGCTGTTCGCAATGCGAGAAGAACAAGACGCTCCGGCCGATCTCAGCAAACCGTCGTCGTCGAGCCCACCCCGGGCGCCCGAAATGTTTAAATCGGAACCGCAAGACGATGACTGCCAGCGCGAGTCGAGTTACGAGGACAACGATCGAGTGTCCCCAAAGCGAGAACCCGAAGAAACTGACGCCGGTCAAGATGCTGAACAAGACCGATACCCATCGACGTCCCCGTACGATGACTGCAGCATGGACTCAAAGTACAGCAACGAAGACCAGATCGGCAGGGAAAGCCCGCACGTCAAGCCCGATCCCGATCAACCGGAAAATCTTTCAAGTAAGAATTCACCGATATCTGGACCAATTTCAATAGCTACGGGACTACGTACTTTTCCTTCGTTTCCCTTGTTCCCTCATTCCCCTCCCAGCAGTGTGTCCTCTGGTAGCATTACGCCTTTTCACAATGTACCTCACGGCATTGTCGAGCCTGATTTATCTCGCGACCCTATATTCTACAATTCATTACTGCCACGACCGGGAAGTAACGACAACTCATGGGAAAGTTTGATAGAAATAACGAAAACTTCTGAAACTTCAAAATTGCAACAATTAGTGGATAATATAGATAATAAGGTATCCGATCCAAACGAATGTATAGTGTGCCATAGAGTCCTCTCGTGCAAAAGTGCCTTACAAATGCACTATCGTACGCACACCGGCGAGCGACCTTTCCGATGCAAGCTTTGTGGTCGCGCTTTCACAACCAAAGGAAATTTAAAGACACACATGGGCGTACATCGCATAAAACCTCCATCGCAAATGTTGCACCAGTGCCCAGTCTGTCATAAAAGGTTTTCAGACCCTACAATATTACATCATCACATTAGGCTTCATACCAGTGAACGAGGTAACATCCCTTACGAACAGGCGCGCACCGTCGAAGTCAACTATTTCCCTCAATTCAGTAATTCTTCCGACACTGCGGAGTTTCCACTATACCGACCCTTTCCGCCTCCCCTTTTTCCCACCCCATCCACTCCCGGCGACCGACGGGCGGACTCCCGCGGGACCGACGACGAGAGCGGCAGAGACGCGCGCGCACCCTCCGCGCGGGAGTTCGACGACGACTCAGACATGAAGGATCGTCGAACTTCGCCGCTCTCCGTCTACGCCTCGGCGTCCGAATGCGAAGTAAAAATCATCACAACAACGGCTTCCCTCCCATCGGCGACAGGTTCGGAGAGCGGGCGCAGCGCACGCGCGTCGCCGCCTTCGCCTTCGCCCTCGGCCTCGCCGTCGTCGCTGTCGCTGTCGCAGTCGCTGTGCTCGCCGCGGGCCGGCCAGCGTTCGCCACCAGCCTCGCCGCTTGACCATCTCGCGCACACCGCGCATCCCGCGCACCCCACGCCCCTCGCCGCGCTCGGAGCTCTCGGCGGATCGCCCTTCAGCCCGCTCGGCCTCGCGTTTCCTCCCGCAGTGCGCGGCAACACGACGTGTAACATCTGCTACAAGACATTCGCCTGCAACTCCGCGCTCGAGATCCATTACCGCAGTCACACCAAAGAGCGACCCTTTAAATGCACCGTCTGCGACCGAGGATTCTCCACAAAGAGCAGTGGCGGCGGTTGCCAGTGCGGACGGCGCGCGCGCCCCCCCCGCCCGCCGCACGCCACTGCTTTGGACCTCTGGAACGCCTTCGTCTACCCGGGCAACATGAAGCAACACATGCTGACGCACAAAATTCGCGACATGCCACCCGGCTTCGACAAAGGTTCCAACGGGCCCGCGGGACTCAACGAAGACACTCGCGACCCCAGTCCAGACAGGCGCTCGTCACCCGACAAAATGGACCTCAAAAGATCCCCGCCGGCGCACCCGCCGCCGCCCATGACGCACGCCCCGCCCATCGACATGCCTCCGCTGCCCAAACGGCCTACGGTATCGAGCACGCCAACTCACCCGTCACCGTCGGCGTCGTCGAAGCACCTGTGTGGTGTGTGCCGCAAGAACTTCTCATCATCGTCAGCGCTGCAGATACATATGCGTACACACACCGGCGACAAGCCCTTCCGCTGCGCCGTCTGCCAGAAGGCCTTCACTACCAAAGGAAATCTTAAGGTGCACATGGGCACGCACATGTGGAGCGGTGGGGCGTCGCGGCGCGGACGGCGAATGTCGCTGGAGCTGCCGCCGCGCCCGCTGGCAGAGCCGCACGACCTGCTGCGCCGCCCTGACCTCTTCTACCCCTATCTGCACGCGCCCTTTCTCAACGGCATGCAGCAAAAGCTGAACGAGATATCAGTTATCCAGCAGAGTGCTGGGCAGAACGGCGTCGCCGGCAAGTTTCCCGGGCTACTCGGGTTCGGTGCGTTCGGCGGCGGGCGGCCGGGCGCCGCGTCCCCACTCGAGAGGCCGCCGTCCGAGCACTATCGCTCGCCGGGCGCGCACGCGCACGCTCCGCTGCAGCCGCCCGCCGCGCAAGCCTCGCCGCCCGCGCCGCACCACCCGCACCCGCACTCGCTCGCCTCGTTGCCGCCGCCCGCGCGCACCGAAGGACTCACAGTTTAA
- Protein Sequence
- MTVKKQCESSGSCSEEEINNVLHAEARHQPEAHMCPRCQEQFENLHEFLYHKRLCDEKAIQMGEERMHSDPEEMVVSGDEEMDGPNKRLEQVRRHRQDAENNNSLDDGEAEVPEADVPPVGLPFPVAGHVTLEALQNTKVAVAQFAATAMANNADNEAALHELAVLQSTLFTLQHQQVFQLQLIRQLQNQLSLTRRKDEQHPSPPPHEPEPAEPAAPAPPAPSPSPPRPPREPSPVPTPPMSQTLPSTHGHLTPRPEPITIPKLPTSSPPMMTHPPYSSISSSLASSIITNNDPPPSLNEPNTLEMLQKRAQEVLDNASQGLLANNLADELAFRKSGKMSPYDGKSGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTAKFPHVKMNPNPIPEHLDKYHPPLLAQLSPGPIPGMPPHPLQFPPGAPAPFPPSLPLYRPPHHDLLPPRPLGDKPLPPHPLFAMREEQDAPADLSKPSSSSPPRAPEMFKSEPQDDDCQRESSYEDNDRVSPKREPEETDAGQDAEQDRYPSTSPYDDCSMDSKYSNEDQIGRESPHVKPDPDQPENLSSKNSPISGPISIATGLRTFPSFPLFPHSPPSSVSSGSITPFHNVPHGIVEPDLSRDPIFYNSLLPRPGSNDNSWESLIEITKTSETSKLQQLVDNIDNKVSDPNECIVCHRVLSCKSALQMHYRTHTGERPFRCKLCGRAFTTKGNLKTHMGVHRIKPPSQMLHQCPVCHKRFSDPTILHHHIRLHTSERGNIPYEQARTVEVNYFPQFSNSSDTAEFPLYRPFPPPLFPTPSTPGDRRADSRGTDDESGRDARAPSAREFDDDSDMKDRRTSPLSVYASASECEVKIITTTASLPSATGSESGRSARASPPSPSPSASPSSLSLSQSLCSPRAGQRSPPASPLDHLAHTAHPAHPTPLAALGALGGSPFSPLGLAFPPAVRGNTTCNICYKTFACNSALEIHYRSHTKERPFKCTVCDRGFSTKSSGGGCQCGRRARPPRPPHATALDLWNAFVYPGNMKQHMLTHKIRDMPPGFDKGSNGPAGLNEDTRDPSPDRRSSPDKMDLKRSPPAHPPPPMTHAPPIDMPPLPKRPTVSSTPTHPSPSASSKHLCGVCRKNFSSSSALQIHMRTHTGDKPFRCAVCQKAFTTKGNLKVHMGTHMWSGGASRRGRRMSLELPPRPLAEPHDLLRRPDLFYPYLHAPFLNGMQQKLNEISVIQQSAGQNGVAGKFPGLLGFGAFGGGRPGAASPLERPPSEHYRSPGAHAHAPLQPPAAQASPPAPHHPHPHSLASLPPPARTEGLTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00689616;
- 90% Identity
- iTF_01144726;
- 80% Identity
- -