Basic Information

Insect: Papilio bianor
Gene Symbol: -
Assembly: None
Location: HiC:7214320-7216904[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.00016 0.011 16.0 0.4 1 23 275 298 275 298 0.96

2 12 0.0014 0.09 13.1 1.4 1 23 316 338 316 338 0.96

3 12 4.7e-06 0.00031 20.8 1.4 2 23 344 365 343 365 0.97

4 12 7.4e-05 0.0049 17.0 0.4 1 23 369 392 369 392 0.96

5 12 0.023 1.5 9.2 2.5 2 21 396 415 395 417 0.93

6 12 1.9e-05 0.0013 18.9 0.5 2 23 498 519 497 519 0.95

7 12 0.047 3.1 8.2 0.3 2 23 539 561 538 561 0.96

8 12 1.1e-06 7.2e-05 22.8 4.2 1 23 567 589 567 589 0.98

9 12 3.4e-05 0.0023 18.1 3.3 1 23 594 616 594 616 0.98

10 12 6.6e-05 0.0044 17.2 2.8 2 23 623 645 622 645 0.95

11 12 4.9 3.2e+02 1.9 0.9 1 19 653 671 653 672 0.83

12 12 0.011 0.75 10.2 1.7 3 19 685 701 683 706 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.00016	0.011	16.0	0.4	1	23	275	298	275	298	0.96
2	12	0.0014	0.09	13.1	1.4	1	23	316	338	316	338	0.96
3	12	4.7e-06	0.00031	20.8	1.4	2	23	344	365	343	365	0.97
4	12	7.4e-05	0.0049	17.0	0.4	1	23	369	392	369	392	0.96
5	12	0.023	1.5	9.2	2.5	2	21	396	415	395	417	0.93
6	12	1.9e-05	0.0013	18.9	0.5	2	23	498	519	497	519	0.95
7	12	0.047	3.1	8.2	0.3	2	23	539	561	538	561	0.96
8	12	1.1e-06	7.2e-05	22.8	4.2	1	23	567	589	567	589	0.98
9	12	3.4e-05	0.0023	18.1	3.3	1	23	594	616	594	616	0.98
10	12	6.6e-05	0.0044	17.2	2.8	2	23	623	645	622	645	0.95
11	12	4.9	3.2e+02	1.9	0.9	1	19	653	671	653	672	0.83
12	12	0.011	0.75	10.2	1.7	3	19	685	701	683	706	0.93

Sequence Information

Coding Sequence: ATGGAGATTGTATATCCTATGTTGTTGATCCCAAAGGAGTGTGTAAAGCTGCACCACAATGCTGCACTGCTTGATGACATCATATTAGACATAACCATCACATCACCGAACACTAAAGGTGAAGCTATTTGCATATACACTGGTTGTTGCCACATTAAATTTACAGATAAAGAATATAATACTCCAAATAAGTCAACACAAGGACTAGAATTTATAAATATTGAAGATACAAAATCAGTTCAAGATGCAGCCGTTCAATCAACATATCCATCAAATGTATGGATAGATCCAGCCCGGAGTCCATACATATATAACAATTATACAGCAAATGGTCTCCCCTCACAACATTTTGTATATAACCATCAAGCAAATCATGTAACTGTTCAGCAACATAATACATACATAACTCAGAATGTATACAGCTATCCAGAAACCATACATTATGCATCATCCGAGGATTATGGCTTTGAAACATTAATAAATCAAAACAATGCAACGGATTTGACACATTTGTTTGATGGTGATGAACTAGAAGAATGTGGTTTGCTGCTTGAAGAAATTACATGTGAGAAAGAGCCTCCAATTATAACCGAGTCAATTGACTTAGGACTTCAGAGTGACAATAATGCACTGAAGCAGCTAATGTCAAATGGTATTCAAATACCATCAAAACCACAAAAGACAATCATATTCATGGGCCCAGAGTGTGGCCAGACAATACAGAAAATTGCAGTCAATGACCCATCTTTGGTGTGCACCTCAGACAATGTTACTACAAACATCATTGATATAGAAAACAATAATAACAGCAATCAAAAGAAGTACCAGTGTGAAAAATGTGAAAAAATATTTGATCAAATAACAGCATTCAAGCAACACATGGTTGTTTCACACGAACGAAGCAAAATACATTGCGGATCTGAGAGTGACAATAAGGTAAAGGTGTTCATGTGTTCCCAGTGTGGCAAGAAGTTGAAGTCGCAAGAGAAGTTTGAATTGCACAGCCGCGGCCACGGCGATCCTGACTTGGAGTGCGAAAAGTGCAACAAAGTTTTCGCGTCTAAATTTAGTTTGCGCACTCACCGTAAGATACACACGCGAAAATATCCATGTCCTAATTGTACAAAATCATTTAACAAACTCGCAGAGTTAAGAGGACACCTTACAAAAACGCATCCCAGTCAAAAATGTGATGACTGTGATTTCACAACAAATAACCAAATAGAGTTAGAAAAACACGAGAAATGTCACATTTGGCGGGAAAATACCGAAAACGAGAACTCGGAATCGTTTTTTCTTGACGATGGTGTATCTGACATAGAGAATGATTCGGATTCCGGTAACATTTACGAATTGCCAATGGATATCGATGAAAATGACTCGATTGAAATCGATATAAAAAATGCTAATGATGTTCTTGCCAAAGTGATGTCTAATAAAGTTTTTTTACTCAATGCAAGGAAGGGAAGACAAAACAAGAGATTTAAAAAGAGTTGCGATGTTTGTTCGAAAACCTTCACCCGAATTGGGGATCTGAAAAGGCACCTCATCGAGCACGTTATCAAAAGTACCCTGGCGAAGAATCCGGTCAGCAAAGATGGCACTCTCAATATACAATGCGAGGTGTGTCAAGTACAATCTTTCACTAAGGTAGATAAATATAAGGCCCATTTGCGCGAGCACGCGAAATTAACTTTGTACCAGTGCACATTCTGCAACAAATCTTTCAGTGACTCCAGTAACTTTTCGAAACATAAGAAAATTCACGGTTCTGCATACTACCAATGTGATCTTTGTCTGAGGAAATTTAATTCTAAAAAGATGCTTACTAAGCACATGCAATATCACAAGGAGAACACTCCATTGCCATGTCGCTACTGTGATAAAACATTTCATTTCGAATCAATGTTAAACAAACACATTAAAAGCACTCATAATAAAGCAGCAGGGACTCGATTCCGTTGCAATTTTTGCCAGGCTTATTATAAAACGTTAAAAGAAAAATGGGACCACGAATGGTACATACATAATGTTAGAAAAGTGAAAATCGATTGTGGCATTTGCAGTCGTAAGTTCAGAAAATATGCAGAACTTAAAAGGCACTGCTTAGATAACCACGATTTGGAAATACCACCTGCCAAAATGTTTTTACAGCAACAGCAAGATGAAGAGTATGCAATTTAG
Protein Sequence: MEIVYPMLLIPKECVKLHHNAALLDDIILDITITSPNTKGEAICIYTGCCHIKFTDKEYNTPNKSTQGLEFINIEDTKSVQDAAVQSTYPSNVWIDPARSPYIYNNYTANGLPSQHFVYNHQANHVTVQQHNTYITQNVYSYPETIHYASSEDYGFETLINQNNATDLTHLFDGDELEECGLLLEEITCEKEPPIITESIDLGLQSDNNALKQLMSNGIQIPSKPQKTIIFMGPECGQTIQKIAVNDPSLVCTSDNVTTNIIDIENNNNSNQKKYQCEKCEKIFDQITAFKQHMVVSHERSKIHCGSESDNKVKVFMCSQCGKKLKSQEKFELHSRGHGDPDLECEKCNKVFASKFSLRTHRKIHTRKYPCPNCTKSFNKLAELRGHLTKTHPSQKCDDCDFTTNNQIELEKHEKCHIWRENTENENSESFFLDDGVSDIENDSDSGNIYELPMDIDENDSIEIDIKNANDVLAKVMSNKVFLLNARKGRQNKRFKKSCDVCSKTFTRIGDLKRHLIEHVIKSTLAKNPVSKDGTLNIQCEVCQVQSFTKVDKYKAHLREHAKLTLYQCTFCNKSFSDSSNFSKHKKIHGSAYYQCDLCLRKFNSKKMLTKHMQYHKENTPLPCRYCDKTFHFESMLNKHIKSTHNKAAGTRFRCNFCQAYYKTLKEKWDHEWYIHNVRKVKIDCGICSRKFRKYAELKRHCLDNHDLEIPPAKMFLQQQQDEEYAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01147596;
90% Identity: iTF_01149014;
80% Identity: -