Pbia007664.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Papilio bianor
Gene Symbol
-
Assembly
None
Location
HiC:10214976-10221239[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.21 14 6.2 1.9 2 23 495 517 494 517 0.88
2 10 0.0054 0.36 11.2 2.9 1 23 523 546 523 546 0.96
3 10 2.7e-05 0.0018 18.4 3.5 1 23 552 574 552 574 0.94
4 10 6.6e-07 4.3e-05 23.5 5.1 1 23 580 602 580 602 0.99
5 10 1.4e-05 0.00092 19.3 0.1 1 23 608 630 608 630 0.97
6 10 0.00013 0.0085 16.3 0.5 1 23 636 658 636 658 0.97
7 10 0.00024 0.016 15.4 1.6 2 23 751 773 750 773 0.94
8 10 1.3e-05 0.00085 19.4 4.3 1 23 779 801 779 801 0.99
9 10 0.0024 0.16 12.3 0.8 1 22 812 833 812 833 0.93
10 10 0.00027 0.018 15.3 0.1 3 23 843 863 841 863 0.92

Sequence Information

Coding Sequence
ATGGATCCTCTCCTTGTAGCCATTGCTTTGAAACCAAATTCGCCGCAAGTACCTAATGTAAGACCGTCGGCACCTCCACGTCCAACTCAAGTGATTTCGGTTCCAGCACCACAGCCAGTGCATGAAGTATCGAATATAGAGCCTGTTCCTGTCAACTGTGCTAACGGCGAAGTGTTCCCCACCACTGGCGGAAATTGCGATCAATACCTAATGTGTTACTTTGGAAAAACTTTGTTATTGAATTGCCCAGCCGGACTAGCTTTCAACTATGAAACCAAAAGCTGCGATTGGGTGGAGAATGTGCCATCTTGCAATCCTAGAGCATTTGAAGGGTTCAGTTGTCCTGCCGGTGTTTATAATGACCACATCTTTAAATACAGATATCGTGAAAGCTGTCGTCAATATGTCGCCTGTCACTTGGGCAAGCCGCGTCTCCTTAGCTGCGAAGCGGGACATTTCTTCGACGATTACACCAACTCTTGCGTTGATGCAGAATACGTCACCAACTTTAACTCTGAAGTAAACTTGAATAAGAAACATTCAAATACAGATAAACCTCAAGAATCAAAAAATCTCCTACCGCTCTTAACATTGCAAACTGGCAACCCAATACATCTTACAAAGCAAGAACAGAATAACAACTTTTATTTCATTCCTTTTTTAAAACCCAAATTAAATGTCCAAACTATAGACGTACACCAATACGACCCAAACGAAAATGTACTCAAGACGATTATTATTTTGCCGCCGAAAACTAAGAAACCATGTGATCGTAACTCGAATGTTTCACAACCGCCTGTTACGACAGAAAAGCCAACCATTACCCAACCATGCGATAATATTAAAACTACGAAAAACCCTCCCACCACAATCAAGTCTACCACTGTTTCGCAAATTACAAAAAAACCATGTGAATTAACAACTACGGACATAACACCGACTTCATCAACAACTGAGGGTCCAGTAACAAGAGATCCTGATGGTTCTACTAAATGCTTACGAGATGGTGTCTACCGTGCTAGTAATGTTACGTGTGACCAATTTTATGTGTGTATTCATGGTATACAATATTTGATGGACTGCCCGTATGGACTCGTATTTAATGAACAGTTAAAAATTTGTGATTGGCTCGAAAATGTAGCGGACTGTAAACCACCAGCATTTAAAGATATCACCTGTCCTGACGAAGGTTACGGCATTGATGGTAATTTGATCTTGCAATTCAGAGTGAATGAGCTAGACACATCAAATTCATCTGATTATAGTAATTACAATTATAAAAATAATCATGAAATGGTAAAACCAAAGCCTGAGGACTATATAGTTGAAGACAGTGTTGTAATGGTTGTGGACCCCAGTCTAGATTATGACTCCTCAGAGGAGGAGTCTGAAAATGTTGAACAACCTGATAGTGAAAAAAATGAGTGTGAAAATATTCAGGAGGGTGAGCCCATGACTGAATCATTTTTTAAAAATGTATCCATGTGCCAGTACTGTGATCAAGCGTTTGTTTCTCAAGAAAAATGTAAAGAGCACGAACAGAATTATCATGACCCTAATATGCCGTACAAATGTGTGGAATGCAGCTTGGTCTTTGCAGAGCGCAGTCAATATATCCACCACACTAAACATGTGCATCAAAGTGACAAGCCATATCATTGTCCCGAATGTGAAAAATGTTTTGGTAGAAGATCTGATTTGAGAAAACATTCAGTTGTTCATACAGGCATAAGACCATTCCAATGTCATTATTGTCTTAAGAGTTTTTCACGTAACACAAATTTAAGTAAGCACTTGCGAATACATGCAGGGCATAAACCTCATGTGTGCCCAATGTGTCCAAGAAGTTTCGTAGCAAAGGGAGATTTACAGAGACATGTTCTCATTCACTCTGGCATGAAACCTTACGCTTGCAGTAAATGTCCTTTATCCTTTGGTCGAAGAGATAAACTAATAAAACATGAATTAAAACATATTCCTCAAAATTCACAAATGCAAGAGATTGATCAAGAGACTCATGACATGGTTGTCAGTATTAATCCTTTTAGCAACATAATGACATCTCCTACTCAGCCCAATCCTGAAAATTCCATTGGAGATTATGACTTTCCAAGTGTACCTGACCACATAGTTGGTGAAAGTAGTTTCATAAATCATGTAAGAAAAAATCCTCCTACCCCTAGTAAATCAATACAAGGTTCACCGGGTAAGCAGAAAATAATACCTAACAAAAACAAACCAAAGAATATAAAATGTCATCAATGTACGAAACGATTTTCATCACTAGATGCATATAAAACACATGTTTCCATTGCTCATATTGGATCAAGAGTATTTCAATGCAAAGTGTGTTTTAAGAAGTTCTCCAGAAAAAGAGAGTTGGACCGTCACACACAAACACATTCGGGCATGAAACTTGTTCAAAAAAATTTGTTCTCGTGCAATAGTTGTGATCAGAATTTTACTACTAAGGAGAAATTAGATAATCATGAACAAACACAGGAGTGTTTAGTTGTTAACATGCCTTGTATAGAATGTGGTTTGACTTTCAAAAAGAAAGCAGATTTGGTTGCACATATTAAATCTCACTTTACAGAAAATTTTGATGACAAATTATGCATGAGTGAAATTAAAAAAGAGACAGAATCAGATTTCCAGCTTGATGAAAACTTTTATGAATTAGAAACCTGA
Protein Sequence
MDPLLVAIALKPNSPQVPNVRPSAPPRPTQVISVPAPQPVHEVSNIEPVPVNCANGEVFPTTGGNCDQYLMCYFGKTLLLNCPAGLAFNYETKSCDWVENVPSCNPRAFEGFSCPAGVYNDHIFKYRYRESCRQYVACHLGKPRLLSCEAGHFFDDYTNSCVDAEYVTNFNSEVNLNKKHSNTDKPQESKNLLPLLTLQTGNPIHLTKQEQNNNFYFIPFLKPKLNVQTIDVHQYDPNENVLKTIIILPPKTKKPCDRNSNVSQPPVTTEKPTITQPCDNIKTTKNPPTTIKSTTVSQITKKPCELTTTDITPTSSTTEGPVTRDPDGSTKCLRDGVYRASNVTCDQFYVCIHGIQYLMDCPYGLVFNEQLKICDWLENVADCKPPAFKDITCPDEGYGIDGNLILQFRVNELDTSNSSDYSNYNYKNNHEMVKPKPEDYIVEDSVVMVVDPSLDYDSSEEESENVEQPDSEKNECENIQEGEPMTESFFKNVSMCQYCDQAFVSQEKCKEHEQNYHDPNMPYKCVECSLVFAERSQYIHHTKHVHQSDKPYHCPECEKCFGRRSDLRKHSVVHTGIRPFQCHYCLKSFSRNTNLSKHLRIHAGHKPHVCPMCPRSFVAKGDLQRHVLIHSGMKPYACSKCPLSFGRRDKLIKHELKHIPQNSQMQEIDQETHDMVVSINPFSNIMTSPTQPNPENSIGDYDFPSVPDHIVGESSFINHVRKNPPTPSKSIQGSPGKQKIIPNKNKPKNIKCHQCTKRFSSLDAYKTHVSIAHIGSRVFQCKVCFKKFSRKRELDRHTQTHSGMKLVQKNLFSCNSCDQNFTTKEKLDNHEQTQECLVVNMPCIECGLTFKKKADLVAHIKSHFTENFDDKLCMSEIKKETESDFQLDENFYELET

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-