Pbia002826.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:2513580-2532785[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 8.2 5.4e+02 1.2 0.5 2 23 305 327 304 327 0.89 2 17 0.001 0.067 13.5 1.1 3 23 349 369 347 369 0.96 3 17 0.09 6 7.3 0.1 1 23 373 395 373 395 0.97 4 17 0.00041 0.027 14.7 1.7 1 21 400 420 400 423 0.88 5 17 6.1 4e+02 1.6 1.2 2 21 430 449 429 453 0.72 6 17 0.026 1.7 9.0 0.1 2 22 460 480 459 480 0.93 7 17 6.6 4.4e+02 1.5 0.7 1 16 683 698 683 700 0.86 8 17 0.028 1.8 8.9 0.7 1 23 807 829 807 829 0.95 9 17 0.0018 0.12 12.7 0.3 2 23 856 878 855 878 0.95 10 17 5.1e-05 0.0034 17.6 0.2 1 23 901 923 901 923 0.98 11 17 0.00023 0.015 15.5 0.4 1 23 927 950 927 950 0.97 12 17 0.0001 0.0068 16.6 0.3 1 23 955 978 955 978 0.96 13 17 0.11 7.3 7.1 3.0 1 20 984 1003 984 1007 0.81 14 17 3.7e-07 2.5e-05 24.3 2.8 1 23 1014 1037 1014 1037 0.98 15 17 0.014 0.92 9.9 5.3 1 23 1043 1065 1043 1065 0.97 16 17 4.9e-07 3.3e-05 23.9 1.7 1 23 1071 1093 1071 1093 0.99 17 17 6.4e-05 0.0042 17.3 1.8 1 23 1099 1121 1099 1122 0.95
Sequence Information
- Coding Sequence
- ATGGAATTAAATAGTGAAAGTTTTATATTCATAGCTAGATGTAAATGTTGTCTTAACGAAGATGAATTACAAAAATTATGGGAGCCATACGTATTTGAAGGAGAAACAGAGATATATGGACAAATGCTGTCGGAATGTTTTTCGCTATCACCGCAAGGTGAAGAACATTTGCAGAGTATAGAAATGATTTGTATTTCTTGCATTAAGAGGTTAAGAGATGCTCTTAGCTTCAGAAGAGAGGTGATAGCGAGCGCTCAAGTATTACAAGAGCATCAAGATCAAATGTTTCAACACACAACAATAAAAGACGAAAGTGAAGCAGAATATCAAAATATTGAATATTTGGATATCACAGAAGATAACAAAGACCACTTGAGTGATGATAATTCAAGAAACGATGAATCATTTGTTTTGGAAAAAGAAGTGAACAATTATAATAAAATATGGCCAAAGAAACTGCCGAAAGAGTATCGTAACAAAACATATAAGCAGTACAGTGTTGCCGCACTTAAAATGGCAATTGATACAGTGTTGACTGATAGAATGACAATTGCTGAAGCTGCACAAACGTATGGTGTACCACGGAAGACGGTTACAGCAAAGGTTCATGCAGCTCGGAATAAAACGGAGGATAACAATGATGAATTAAATAAATTAGACGAACAAGAAAAACACAATAAACTTGTAGAAGAAATAAAAACGATACTAAACTACACAAATGCTATACCATACAAATCGAAAGCGTCCCGTTTTTATTGTGCCTATTGTACAAACAGTACGGGCTATGAAGACGGCAATGATTTAAGAGTTCACACCACAACGGAACACATCTCTGAGAGGACTGCAATGATAGACCAAATAATGAGACCTCAGTGGATAAATGAAGTGATGAAGTTAGATATACAATCTCTACATTGCACTATTTGCTTAACGGCAATACCAAATTGGAATTTCATGTTCCGGCATTTAGATGAATTTCATCAAATTGTCTTACACGAAGCATACAATCGGGTAATCCCATATATACTTAATAGGGAATTAATTTGTGCGCTGTGTTATGAATCATTTTCTAGTTATCATTATTTAGATAGCCATATGAATACACATTACAGTAATTATATATGTTATGAATGTGGTGATATTTTTTTATCCGCTAGCCGTCTGAACAAACATATTGAAATACACAAATTAGGTGAACATCCATGTCCAGCTTGTGGTAAAGTGTTTAAATCTAAAAAGTATATGAGAAAACATTTCGTTTATATACATAGTACTGTTAAAAAGATAAAATGTTATTATTGTCCGGAGAAATTCTTTGGTGTATATGAAAGGCATCAACATAACCTCAAAATGCATGAAGAAAAGGTGAAAAAAATGACATGCGACGTGTGCGGGAAGATGTTTGATTGGTTACCATATTACACGACTCATATGAGACGGTTATCAACCAACACAACTTTGAGCTCCCTGATCTGCTCGTCTTGTATACAGCTGCTTAGAAATGCCAATAATTTCCGTATGTCGATTGTTAACTCGGAACAACAACTTTTAAATGCAATTACCGACAAAGAGACTGTTTTTATAAATGTTCCAGCAAATTCCCATCCAGAAGATGTTGAAGACATAAAAAATGAGGATCTGATAGATGTGAAAGTGGAATATGAGGGTCAGGAGTCTGTGGACTTCGATGATTACTTTGTAGACAACATTGAAGATAATTCTGATAGCTCAACAAAAGACTTACCTACTGATAAACCTTCAGACCCTGAAGCAGCGTTACTGGCAAGATTCCCGAAGCATAATTTGAAACTACCCACAAGAGAATCCCTGAAGACTGCTTGCCCTGGCTTCTTTAAACATCTTGAAATGTTAAAAGATAAAATAGTCTTACCGAGGATGATAGCAAAACTTTTGGACCCAGATGAATCACCACCGATAAAAAAAAGAAAACTATATATCTCAGAGAAAATGGGATATATTCTAAACGCTGCAGTTATATTAGAAAATAGTAATGCTACACCGTTTAAAAACAGGAATTGTTCGGGATACCCATGTTATTATTGTAGAAAGTTATACGAGAATTTGGATAAACTACATAGCTCAACAAAAGACTTACCTACTGATAAACCTTCAGACCCTGAAGCAGCGTTACTGGCAAGATTCCCGAAGCATAATTTGAAACTACCCACAAGAGAATCCCTGAAGACTGCTTGCCCTGGTTTCTTTAAACATCTTGAAATGTTGAAAGACAAAATAGTCTTACCGAGGATGATAGCAAAACTTTTGGACGCAGATGAATCACCACCGATAAAAAAAAGAAAACTATATATCTCAGAGAAAATGGGATATATTCTAAACGCTGCAGTCATATTAGAAAATAGTAATGCTACACCGTTTAAAAACAGGAATTGTTCGGGATACCCATGTTATTATTGTAGAAAGTTATACGAGAATTTGGATAAACTACGTGAGCACGTTACAGAACATAAGAAAAAAGAAATAAAAAAGATACTGTCGACATATGGTGCGGAGTATTTTGTAGTGTATGTGGATGTGACGGACTTAAAGTGTACTATATGTGATGAAAAAGTGATTAATTTAACAGAATTGAAGACACATTTGATTAAAAAACATAATAAAATATATTACAATGACTATACAGATCGTGTAATACCGTTTAAATTGTCACAAGACAATATATTCGAGTGTCAAGTTTGTGGTTTCAGTTTTGAAACATTCGGCTCAATAGAGCGGCACATGAATGTACATTATAGGAACTATGTCTGCGAAGAATGCGGTTCCGGATTCATAACCAAATATAGGTTAAGAGTGCATACAAAATCATTACACGAAGCTGGTAATTATCCATGCGAGAGATGTAAAAAAGTTTATGCGACTGCACAGAAATTGAAAAATCATATATCATCGGTGCATATGAATTTAAAAAGATTTAAATGTCCAAAGTGTCCGGAGAGGTTCTCTGAATACTTTAAGAGGCATAAACATTTGGTTGACACACACGGGATGACACCATTGAAGTATAAATGTAAAGTTTGTGACAAATCTTTTGATCGGAGATATTCTTTATCTCGTCATTTGAAGAGAGATCATTTAGAAGAGCGGGATTTTCATTGTGATTTATGTACTTATACGTGTTTCACGAATAATGAGTTAAGAGTTCACATGATTAAGCATAATGGTGAAAGAATATATGAATGTACCGTTTGTAAAAAGTCTTATGCGAGGAAAAAAACATTAAAAGAACATATGCGGATTCATAATAATGATAGAAGGTTCGCTTGTGCTGTTTGTGGACAAGCTTTTGTACAAAAATGCAGTTTAAAAGGTCACATAAAGACACACCACTTAGAATATAATATGCAATAA
- Protein Sequence
- MELNSESFIFIARCKCCLNEDELQKLWEPYVFEGETEIYGQMLSECFSLSPQGEEHLQSIEMICISCIKRLRDALSFRREVIASAQVLQEHQDQMFQHTTIKDESEAEYQNIEYLDITEDNKDHLSDDNSRNDESFVLEKEVNNYNKIWPKKLPKEYRNKTYKQYSVAALKMAIDTVLTDRMTIAEAAQTYGVPRKTVTAKVHAARNKTEDNNDELNKLDEQEKHNKLVEEIKTILNYTNAIPYKSKASRFYCAYCTNSTGYEDGNDLRVHTTTEHISERTAMIDQIMRPQWINEVMKLDIQSLHCTICLTAIPNWNFMFRHLDEFHQIVLHEAYNRVIPYILNRELICALCYESFSSYHYLDSHMNTHYSNYICYECGDIFLSASRLNKHIEIHKLGEHPCPACGKVFKSKKYMRKHFVYIHSTVKKIKCYYCPEKFFGVYERHQHNLKMHEEKVKKMTCDVCGKMFDWLPYYTTHMRRLSTNTTLSSLICSSCIQLLRNANNFRMSIVNSEQQLLNAITDKETVFINVPANSHPEDVEDIKNEDLIDVKVEYEGQESVDFDDYFVDNIEDNSDSSTKDLPTDKPSDPEAALLARFPKHNLKLPTRESLKTACPGFFKHLEMLKDKIVLPRMIAKLLDPDESPPIKKRKLYISEKMGYILNAAVILENSNATPFKNRNCSGYPCYYCRKLYENLDKLHSSTKDLPTDKPSDPEAALLARFPKHNLKLPTRESLKTACPGFFKHLEMLKDKIVLPRMIAKLLDADESPPIKKRKLYISEKMGYILNAAVILENSNATPFKNRNCSGYPCYYCRKLYENLDKLREHVTEHKKKEIKKILSTYGAEYFVVYVDVTDLKCTICDEKVINLTELKTHLIKKHNKIYYNDYTDRVIPFKLSQDNIFECQVCGFSFETFGSIERHMNVHYRNYVCEECGSGFITKYRLRVHTKSLHEAGNYPCERCKKVYATAQKLKNHISSVHMNLKRFKCPKCPERFSEYFKRHKHLVDTHGMTPLKYKCKVCDKSFDRRYSLSRHLKRDHLEERDFHCDLCTYTCFTNNELRVHMIKHNGERIYECTVCKKSYARKKTLKEHMRIHNNDRRFACAVCGQAFVQKCSLKGHIKTHHLEYNMQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -