Pbia011160.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- L
- Assembly
- None
- Location
- HiC:7038118-7051495[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 5.3e-06 0.00035 20.7 3.5 1 23 68 90 68 90 0.99 2 17 0.45 30 5.1 5.8 1 23 96 118 96 118 0.97 3 17 6e-06 0.0004 20.5 4.1 1 23 124 146 124 146 0.99 4 17 1.9e-05 0.0012 18.9 0.1 1 23 152 174 152 174 0.98 5 17 0.00018 0.012 15.8 0.2 2 23 199 221 198 221 0.96 6 17 4.3 2.8e+02 2.1 0.1 9 23 252 267 248 267 0.93 7 17 0.44 29 5.2 0.0 3 23 323 343 322 343 0.97 8 17 0.069 4.6 7.7 0.0 3 23 358 378 357 378 0.93 9 17 8.4e-05 0.0056 16.9 1.2 1 23 386 409 386 409 0.91 10 17 0.0081 0.54 10.6 0.1 1 23 414 437 414 437 0.92 11 17 0.0016 0.11 12.8 0.1 1 23 493 517 493 518 0.94 12 17 0.00014 0.0094 16.2 0.1 2 23 583 604 582 604 0.96 13 17 0.088 5.8 7.4 0.0 1 23 610 632 610 632 0.96 14 17 2.3 1.5e+02 2.9 0.4 2 23 640 661 639 662 0.93 15 17 0.29 19 5.7 0.5 1 23 736 758 736 758 0.94 16 17 0.0025 0.16 12.2 0.1 1 20 766 785 766 788 0.95 17 17 0.15 10 6.6 0.2 1 23 795 817 795 817 0.94
Sequence Information
- Coding Sequence
- ATGACCAAAAAATGTATTTTCATTGCTCCTTCAGAGGCATTGGGCAGTGTGGGCAGCGTGGGCAGCACGGCGGGTAGCTCGTGGCCGTCGTCAGCGGAGCCGTCGCCCTCGCCGGCATCGACGCCGACCTCCGCGGACGCGCCCGACGGCGAAGCGGACGGCGAGCCACCCTACACACTCGGCGCCACCGAGCACACGCCCTACCAGTGCCCTTTCTGCGATAAAGCCTTCCCCAGGCACTTCTATCTTAAGAAGCATGAGCAGACGCATTCGGACCAGATGCCATTCCGATGTGAGTTCTGTTCGCGGTTGTTCAAGCACAAGCGGTCGCGCGACCGGCACGTCAAGCTGCACACCGGCGACCGCAAGTACCGCTGTGCGCACTGCGAATCCGCATTCTCTAGAAGTGACCATCTGAAAATCCACATGAAGACCCACGACAACCAGAAGCCGTTCCAGTGTACGGTGTGCAACCGCGGCTACAACACGGCAGCCGCGCTCACCTCGCACATGCAGGGCCATAAGCGCGACCGCGCGACCCGTGATCCACGCGACCCTCGCGAAACAAGGGACCACGATCGTCGCCGGACTACGCGCTGTCTGCACTGCGGGGATGCCTTTCGAAGACCGGAAATGCTTCAGGCCCACATAGCGACAGTCCATGGCGTAGACGCAGCTTCCCTGACTCCACCGCGCCGCGTCGCCTCCCAGCCTCCGCCTACGCTGCTCGCATGTATCTACTGCACCAGGGACACCTTTACCAGCATGGAGCAGCTCCAATTGCACGTCCGCGCGGCACACTCTGCATTGTTGAACGGCGACCCCGTAATGTCCTCGACACTCGATCAACCGACGCCCACGGACCTCAGTCGGAGAAGTAGCGATGATGTCACAATCGCAAAACGCCCCAAGTCAAGCTCGGAATCGGCGACACCTCAAACTGCGCTATCTCCTAGTACACTCTTATGTAATCAATGCGACGCAGCCTTGCCAGATTTCGAAGCTTTTAGAGCCCATGTGAAAGGGCACCTGGAGGAAGGCGGCGAGCTGAGCCGCTCGAGCCCCGCGCCCTGCGTGCACTGCGGCGCTACGTTTGCGGACGTGGCGGCGACGGAGCGCCACCTGGCGGCGCACTACCTCGCCGTCTCCTGCGAGTACACCTGCCACAGCTGCGTGCGCAGCTTCCCCACGCCGGACGACTTGCAGAAACATCTATTCGACTTGCACGCTCATCATTTGTATCGCTGTTCACTTTGTAAAGAAGTCTTCGATTCGAAAGTAGCTATTCAGGTGCATTTCGCGGTGGCGCACAGCGGTGAAAGCAAAGTGTGGGTGTGCCGACCATGCGGCGCGGGGGGTGTGGGGGGCGCAGGGGGTGCGATGCGGTCGGAGGCAGAGGGCGCTGCACACGTGCGGGCGCGGCACGGGGGCGCGCGGTGCCGCTGCGGCGCACTGCTGGCCGCTCCGCGCCGGCACTACCGCTGCCCCGCGCCCGCCTGCCCCGACACCTTCGCCGTCCAGTACCTGCTCGAGAGGCACATGCAGATGCACCACGCCGTCATGCAACAGACACTGAACGGCGAGATGACCCGTCCAAAGCGCTTGGACAACAACAACGTGGAGGGCGAGGACGTGTGCTCGCCGTGCGCGGGGGGCGCGGCGGGTTCGACGGGTGCGGGGGGCACGGCGGGCGACGGCGGTGGTGTGCTCGACGAGCGGCGCAGAAAGAACGGCGCGGTGGCGTTGCAGTGTGCCTACTGCGGAGAGCGCACGCGCAGCCGCGCCGAGCTCGAGGCGCACACGCGCGCGCACGCCGGCGCCGCGCGGCACAAGTGTCTCATCTGCGACGAGGTGCTGCCCTCCGCGGGCGTGCTGGCGGAACATAAGCTATCGCACTGCAAGGTTATCGCCGGCGACACATGCTCGCGATGCCGAGCGCGACTGCCGACGGAGGAGGCGTTCCTCGGGCACATGGCGCGGCACCACCCCGCGCTGCCCGCGCCCTGCGTCGTCTGCCGCCAGACGCTCGCCTCCGAGGCCGAGGCCCGCCTCCACGCGCGCTTCCATCTGCGTCCAAACGACGACGAGCAGCGCTGCGCGATCTGCCTCCGGCCGCTCACCAAGAGCGAGACCGGCGAGGGCGTGCGGGCGTGCTCCGCGTGCTACGCGCGCCACGCCACGCCGCGGCCCGCGCCCGCCGCCGACCACGACTGCCGGCTGTGCAGGCGCTCGCTCGGCTCGCCCACGCGGCTGCAGGCGCACCTCATCGAGCACACGTTCGCGGGCATCGGCGCGTTCACCTGCTACTTGTGCTCGGCGGTGTTCACGAGCGCCGCGGGCCTGCAGCGCCACCTCCCCGAGCACGCCGCCGCGCCGCGCCCCTACGACTGCGCGCGCTGCGGGGTCAAGTTTTTCTTCCGCGCCGAGCTGGATAACCACGCTTTTGTGCATATCGAGGAGGCGGAAATAGCTCAGCGGGCGTTTTACGAAGCTTATGCGAGAGGCGCCGCGTCGGCGTGGGCGGCCTTGGCCCCGCCGCCGCCGGATGCGACGCCCATGCCGTCGGCGTCGGCTCCCGGTCCGCCTGCCGCTGATCATCCGGTCAAAATAGAACCGGATATAAAAGAAGAACGGAATGCCGAGGAATATATCGAATCGGGCACGGGGCCTACGAGAATTTGTGCAGGGAGGACAGTGACTCGACTGCGAGTTAGCGCTGGACGTGATCGGCCGCAGAACATAGGTCAAATTACACTTCTGCTCAGCGTATAG
- Protein Sequence
- MTKKCIFIAPSEALGSVGSVGSTAGSSWPSSAEPSPSPASTPTSADAPDGEADGEPPYTLGATEHTPYQCPFCDKAFPRHFYLKKHEQTHSDQMPFRCEFCSRLFKHKRSRDRHVKLHTGDRKYRCAHCESAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQGHKRDRATRDPRDPRETRDHDRRRTTRCLHCGDAFRRPEMLQAHIATVHGVDAASLTPPRRVASQPPPTLLACIYCTRDTFTSMEQLQLHVRAAHSALLNGDPVMSSTLDQPTPTDLSRRSSDDVTIAKRPKSSSESATPQTALSPSTLLCNQCDAALPDFEAFRAHVKGHLEEGGELSRSSPAPCVHCGATFADVAATERHLAAHYLAVSCEYTCHSCVRSFPTPDDLQKHLFDLHAHHLYRCSLCKEVFDSKVAIQVHFAVAHSGESKVWVCRPCGAGGVGGAGGAMRSEAEGAAHVRARHGGARCRCGALLAAPRRHYRCPAPACPDTFAVQYLLERHMQMHHAVMQQTLNGEMTRPKRLDNNNVEGEDVCSPCAGGAAGSTGAGGTAGDGGGVLDERRRKNGAVALQCAYCGERTRSRAELEAHTRAHAGAARHKCLICDEVLPSAGVLAEHKLSHCKVIAGDTCSRCRARLPTEEAFLGHMARHHPALPAPCVVCRQTLASEAEARLHARFHLRPNDDEQRCAICLRPLTKSETGEGVRACSACYARHATPRPAPAADHDCRLCRRSLGSPTRLQAHLIEHTFAGIGAFTCYLCSAVFTSAAGLQRHLPEHAAAPRPYDCARCGVKFFFRAELDNHAFVHIEEAEIAQRAFYEAYARGAASAWAALAPPPPDATPMPSASAPGPPAADHPVKIEPDIKEERNAEEYIESGTGPTRICAGRTVTRLRVSAGRDRPQNIGQITLLLSV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01149778;
- 90% Identity
- iTF_01142561;
- 80% Identity
- -