Basic Information

Insect: Papilio bianor
Gene Symbol: -
Assembly: None
Location: HiC:3444677-3447158[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.0098 0.65 10.4 2.6 1 23 24 46 24 46 0.94

2 17 0.0038 0.25 11.7 0.0 1 23 50 72 50 72 0.93

3 17 0.00023 0.015 15.5 0.5 1 23 77 100 77 100 0.94

4 17 0.0018 0.12 12.7 4.0 1 23 106 129 106 129 0.96

5 17 3.6e-05 0.0024 18.0 0.6 1 23 136 159 136 159 0.98

6 17 3.3e-05 0.0022 18.1 1.3 1 23 165 187 165 187 0.98

7 17 2.3e-07 1.5e-05 24.9 1.1 1 23 193 215 193 215 0.99

8 17 0.023 1.6 9.2 0.1 1 17 221 237 221 238 0.85

9 17 0.022 1.4 9.3 0.6 1 23 361 384 361 384 0.95

10 17 0.74 49 4.5 0.5 2 23 409 431 408 432 0.92

11 17 0.0019 0.12 12.6 0.3 1 23 455 477 455 477 0.98

12 17 0.00017 0.011 15.9 0.2 1 23 481 503 481 503 0.98

13 17 0.0001 0.0069 16.6 2.3 1 23 508 531 508 531 0.96

14 17 0.0049 0.32 11.3 0.8 2 23 538 560 538 560 0.93

15 17 0.097 6.4 7.2 7.2 1 23 567 590 567 590 0.96

16 17 0.00011 0.0073 16.5 5.4 1 23 596 618 596 618 0.97

17 17 5.3e-06 0.00035 20.6 0.5 1 23 624 646 624 646 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.0098	0.65	10.4	2.6	1	23	24	46	24	46	0.94
2	17	0.0038	0.25	11.7	0.0	1	23	50	72	50	72	0.93
3	17	0.00023	0.015	15.5	0.5	1	23	77	100	77	100	0.94
4	17	0.0018	0.12	12.7	4.0	1	23	106	129	106	129	0.96
5	17	3.6e-05	0.0024	18.0	0.6	1	23	136	159	136	159	0.98
6	17	3.3e-05	0.0022	18.1	1.3	1	23	165	187	165	187	0.98
7	17	2.3e-07	1.5e-05	24.9	1.1	1	23	193	215	193	215	0.99
8	17	0.023	1.6	9.2	0.1	1	17	221	237	221	238	0.85
9	17	0.022	1.4	9.3	0.6	1	23	361	384	361	384	0.95
10	17	0.74	49	4.5	0.5	2	23	409	431	408	432	0.92
11	17	0.0019	0.12	12.6	0.3	1	23	455	477	455	477	0.98
12	17	0.00017	0.011	15.9	0.2	1	23	481	503	481	503	0.98
13	17	0.0001	0.0069	16.6	2.3	1	23	508	531	508	531	0.96
14	17	0.0049	0.32	11.3	0.8	2	23	538	560	538	560	0.93
15	17	0.097	6.4	7.2	7.2	1	23	567	590	567	590	0.96
16	17	0.00011	0.0073	16.5	5.4	1	23	596	618	596	618	0.97
17	17	5.3e-06	0.00035	20.6	0.5	1	23	624	646	624	646	0.99

Sequence Information

Coding Sequence: ATGGATAGACACGATTTGTATATTAACTCGAACGATGGTATCTTACCCTTTAAGATCTCGAAGGACAACTTCGTTTGTATTTTGTGCAGTACAAAGTTTGAAACTTTCAAATCATTGAATCATCATATGAACGTCCACTTTCAGAATTATATATGCGAACAATGCGGCTCTGGATTCATCACACCAGACAGATTACGTGCTCATTCAGTTATCCACGTCAATGGTTCTTTCCCATGTGAGGTGTGTCATAAAGTATTCCGTTCGAATACCGCCAGAACCGAGCATATCGCTAACATTCATAAGAAATGCAAAAGGCACAGATGTCCTGAATGTCACGAAGGTTTTCGTAATTACTTTCAAAGGAATAAACACATTTCTTCGGTCCACGGAATGACATTGAAAGAATTTAAATGCGATTTGTGTCCTAGAGTGTTTAATTTGAGCGGTAAACTCAGGGTACACTTCAGAACGGTGCATTTGAAAATGAAGAGGTACACGTGTGAAGTTTGCGATTGGAAGTTCTACTCCAAATCTGAGTTGAAATTCCATATGATCAAGCATGGTGGGGAGAGGAAGTACCAATGCAGCGTATGCAAGAAAGCATACGCACGGAAGTATACGTTGACTGAACATATGCGAATACACACCAATGATAAACGATATGCATGCGAAGAGTGTGGCAGATCTTTCATCTTTGTGCACACGCTCGAGCGTAAAAAGAGACATCTTCATACGATTTGTTTGTTTCTAGGATCGGACAATACGGATAAACAAGCCACAAAAAGGATCGTCCCGTTGTTCCAAGTGGATTACGACCGTAGCCTCTGTAGGCCGCTGGGCACCGTTACGAACTTTAAGAAGGTGCTCGGGATGGCCCAGCTGACCGGCGAGGACCTCTCGTCCCGGAGCCCTTCTCCTATATACATGGACATGTCACCTTCGCCTCAAATTGAGCTTGGCAGAATAGATATTCCACAGCTCCAGGAACATATACCACAAAAAAATGTCGACATCAGACAAAACGCACTCACTCTATTCGAGTTCTCCACCGTATATCCGTTCGTCTATGGTAATAATAAATTTAAATGTTTCATTTGCTCGCAACCGTTTCTTGAAACTGCCCTCCTAAGACGCCATATGCAGGACACACACACATATGCACCGATAAAACGATTGGTCAATAATCGCAGGGAGAACGTCATCAAAGTGGATGTTAGCGAAATGAGTTGCAGATTATGTCCCCTCAAACCTAAGGATCTGCAGGAGCTCAAAGCACATCTGAAAGTTGAACATCACAAGTTGATTGAACCTGAATTAAAAGATAATATAATACCATTTGTGCTAGAAGGTGATGAAGAGGGCTACAAATGTGTTATGTGCGAAACGAAATTCATTAAAATTCGAACACTCGTCATTCATATGAGCGTACATTTTAATAACTACAGCTGTGAAATCTGCGGATCTGGATTCATGACGTTGCGATTGTTAAAGAAACATTTGGAGGTGCACGAAAGTGGTAACTTTCACTGCGACCGTTGCAGCAAAGTTTTTAACACGTCGTACAAACTATCGCTACATATTAGAGGCGTGCATTTGAAGCAGTATCCTCGACGATGTCCAATGTGCCCGGAAAGATTTAACTCGAACTACCGACGTACGAAGCATTTACAGGACGTCCACAATCAATCAACGCGTGTGCACAAATGCAAAACATGTGGTCGTGGCTTCAACCTAAGATATCATTTAGTGTGTCATACAAGATCTGTTCACCTTCAGGAAAGGAACCATCAGTGTAAGATCTGTCTGCAGAGGTTCTGCAATAAAGAGACGTTGAAACGTCATATGGTGATACATACGGGAGAGAAAAATTATAAATGTGAAATGTGTGGTGAAGCATTTTTGCGTAGAAAAAATTTAAGGGACCATTTACGAGTACACGAAGTACTATAA
Protein Sequence: MDRHDLYINSNDGILPFKISKDNFVCILCSTKFETFKSLNHHMNVHFQNYICEQCGSGFITPDRLRAHSVIHVNGSFPCEVCHKVFRSNTARTEHIANIHKKCKRHRCPECHEGFRNYFQRNKHISSVHGMTLKEFKCDLCPRVFNLSGKLRVHFRTVHLKMKRYTCEVCDWKFYSKSELKFHMIKHGGERKYQCSVCKKAYARKYTLTEHMRIHTNDKRYACEECGRSFIFVHTLERKKRHLHTICLFLGSDNTDKQATKRIVPLFQVDYDRSLCRPLGTVTNFKKVLGMAQLTGEDLSSRSPSPIYMDMSPSPQIELGRIDIPQLQEHIPQKNVDIRQNALTLFEFSTVYPFVYGNNKFKCFICSQPFLETALLRRHMQDTHTYAPIKRLVNNRRENVIKVDVSEMSCRLCPLKPKDLQELKAHLKVEHHKLIEPELKDNIIPFVLEGDEEGYKCVMCETKFIKIRTLVIHMSVHFNNYSCEICGSGFMTLRLLKKHLEVHESGNFHCDRCSKVFNTSYKLSLHIRGVHLKQYPRRCPMCPERFNSNYRRTKHLQDVHNQSTRVHKCKTCGRGFNLRYHLVCHTRSVHLQERNHQCKICLQRFCNKETLKRHMVIHTGEKNYKCEMCGEAFLRRKNLRDHLRVHEVL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01148992;
90% Identity: -
80% Identity: -