Pbia002874.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3429382-3440286[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.021 1.4 9.3 2.2 1 23 62 84 62 84 0.98 2 28 0.039 2.6 8.5 0.4 2 23 112 134 111 134 0.94 3 28 0.0017 0.11 12.8 1.8 1 23 157 179 157 179 0.95 4 28 0.1 6.6 7.2 0.4 3 23 185 205 184 205 0.96 5 28 1.2e-06 8.1e-05 22.7 1.8 1 23 209 232 209 232 0.97 6 28 4.5 3e+02 2.0 4.8 2 23 241 263 240 263 0.88 7 28 0.0016 0.11 12.8 1.0 1 23 269 292 269 292 0.97 8 28 0.0039 0.26 11.6 3.6 2 23 297 318 296 318 0.97 9 28 7.9e-07 5.2e-05 23.3 4.2 1 23 324 346 324 346 0.98 10 28 0.0011 0.071 13.4 0.7 3 23 395 416 394 416 0.97 11 28 3.6 2.4e+02 2.3 1.4 2 23 441 463 440 463 0.87 12 28 0.011 0.73 10.2 0.4 3 23 487 507 485 507 0.95 13 28 0.00013 0.0088 16.2 0.4 1 21 511 531 511 532 0.96 14 28 3.5 2.3e+02 2.3 0.5 5 23 577 596 573 596 0.90 15 28 0.89 59 4.2 1.3 2 23 622 644 621 645 0.93 16 28 0.021 1.4 9.3 0.7 2 23 668 689 667 689 0.96 17 28 0.00029 0.019 15.2 0.0 1 23 693 716 693 716 0.96 18 28 0.29 19 5.7 1.1 1 23 720 743 720 743 0.98 19 28 1.2 79 3.8 0.4 1 23 748 773 748 773 0.91 20 28 0.0018 0.12 12.7 0.3 1 23 858 880 858 880 0.97 21 28 0.022 1.5 9.3 3.1 3 23 906 926 904 926 0.97 22 28 0.0066 0.44 10.9 0.3 2 23 947 968 946 968 0.97 23 28 0.00043 0.028 14.6 0.8 1 23 972 995 972 995 0.94 24 28 0.076 5 7.6 0.1 2 19 999 1016 998 1016 0.93 25 28 0.0029 0.19 12.0 0.3 1 23 1031 1054 1031 1054 0.92 26 28 0.011 0.74 10.2 3.0 1 23 1061 1084 1061 1084 0.95 27 28 0.00026 0.017 15.3 1.0 2 23 1091 1112 1090 1112 0.97 28 28 0.00025 0.016 15.4 1.0 3 23 1120 1141 1119 1141 0.97
Sequence Information
- Coding Sequence
- ATGATTTACATTACTTTGGGATCAAAAGATAAAATTGAAAATTTTACCTCCCCAGGAATCCAAACGGGTGGCGGACAAGGTGCATTTACTGGTATCTGGGAGATGACGTTGTCGGAGCGTCAAAATGCAGCTACACTGTTGGAAAACACGACGATCACACCTTTCGTATACTGTCGATATTATTTCAAATGTTTCTTCTGCCAACAACAATATTCCGATATCAACAACCTTCTCGAACATTCTAAAACCCATGAAATGCCCGACAAAGCTACGATTTTAAAAGAATTAATACCTAAAGGAAAACGCACAGTCAAAGTTGATATCGCAAATCTCAAATGCAAAATATGCGAACGGCTCTTCACAGATATTAATCAAATACGAGAACATCTAACCTCAGATCATAGTATAAATTTTACGCCTTCTGACAACGGAGTAGTGGCCTACAATTTGACGCCAAAAAATGGACAATTCTTATGTCACGTTTGTGACAAATTATTCCAAACCTTCATACTGTTAAATCGTCATTTGAACGTACATTTTTGTAATGCGATTTGCGAAACTTGTGGCGCCGGATTTATAACTCACCAGCGACTTTTACAGCACAAAGAAATACATTCTGGTGGATATCCGTGTACTAAATGCAACAAAGTATACACTACAAATTCCAATTTGAAGTACCACATCGAGAAGTATCATCAAGGAGGTACAAAGCGTCTGTTACGTTGTACACATTGTTCGGAAAGATTTACTGAACACTTCAGAAAGTTGAAACATCTCAAAGCAGTTCATGGGATAACGTTTTCATTTGAATGTGAGATATGTAAATTGGTGTTAACGAGTCGAAGATCTTTAACAATGCATACAAATAAATATCATACTTTAAAAACTCAATGCGAAGTATGCAAGAAGAGTTTTAGCTGTGTGACAACGTTGAAGAAGCATATGATATCACATACAGGGGAGAGGAACTTTGTCTGCAAGATATGCGATAAATCTTACCGCCACAAGAAAAGTCTTAAGCAACATTTGAGGATACACGACACAAGGGTGACGTCAACTGGCAGCGAGGATTCAAGGAAAAGGAAAATTATTTATATTTCCATACCGCAAAGAAACAATACAGAACTTATTTTAGAACATTCCACCGCGTATCCTTTCAAGACAAGATACAACCGTGTTTTATGTGCTTATTGCCACAAAGAATTTGAAATACTCTCTGAATTAAAAATACATATGGATACAAATCATATTGATGGCGATTATAAGAAAATATTATACAACCTGAAAGGTAATTTGATGAAGATTGACATCAGTCATTTGATATGCAAGCTGTGCACACAAAAGTTCCATGGTATAAAAGATTTAATGGATCATTTCTCACAAATGCACAATTTACCAGTTAACTTGAACGAAAGCTTTGGCGTTCTACCCTACAAATACACCGATAAACATTGGATATGCGTCAGCTGCGGTAGAACTTATTCTACCTTCATCGATATCAAACGTCACACATCTACCCACTTCATGAATTACAACTGCGATAAATGTGGAACTACCTTCATATCTTATCAAGCGTTGAAAGATCATCAGAGACAAGTGAAATGTTACAGAACAGCGTACAATGCACGGAACGGACGTGTAATGAGACCTAGAAGTAATGCGGAGATAATATTACAATGTTCCTCAGCTTATCCCTTTAGGACTTGGATGAGTAACTTGTATTGCATCTTCTGTAGACTTAAAACACGTGATCCTGTCTTCTTTCGTAGTCACATGGCGACTGAGCACGACACATACGATGTCAAAACTGCCTTTTATAAGAAATTAAAGAAATCTTTTCTAAATGTCGACATAACAGATCTCAAATGCAAACTTTGCTCGAGAAATATTGAAAAATTTGAACAATTAATTGACCATTTAAAGGACGATCATCATCAACCTATAAAATCTGATGCACAATCTGGTTTACTACCGTTTAGATTGTGCGACGGATCGTCATGGAATTGTGCAATATGCAATAATTCATTTACGAATTTCGATATACTGAGAAAGCATACTCAGAGCCATTACCATAATTACGTTTGTGATACGTGCGGTGAAGGATTTATAACAGAATCAGCTTTATTAACTCACAATAAAATACCTCATGAAAATAAATATACATGCTCTAGATGTATAGCGACATTCTCAAGTTTAACTGAAAGGAATAATCATGTTAAAACACAGCACACATCGAAACCCTACGTATGTTTAAACTGCGATGATAAGCCACGTTTCTCATCGTGGGAAATGAAAAAGAAACATCAAATGTTAGTTCATAATTACGGAAGTGATGGTGATAGTTATGCATATTATTCTAAAGAAGAAATAATTATAGAAGAATTAATTAAAGAGGAACGAGAAGTTATTAATGATGACAGAAAAGAGAAAAATAATGACATTGATTCTTGCGAAGAACAGAAGCCACAGAAAACATTAAGTGCTCGTAGCTACGCGTCATTTATAAGAAAAGATACTCTTAATATAGTGGAAAATTCCACCGTCTGTGTGTTCCAATGGAACAAGAGTTGGTATATATGTTACCTTTGTAAGAAAAACTTTATTAACATTGACGCATTGAGAGAACATACTGACATGCATACAATCAAAGAATTAGAAGAAAAAATAATATCTCAACAGAATAGAATGGTTAAAGTTGATATATCAAAGTTGTTCTGCAAAATATGTAAGAAACAGTTAAACGATTTACTCGAATTACGTCACCATTTGAAGAAACATAATATAAAATTTTATTTAAACGATGATTTGTTAATGCCTTTTAAAATAAACAAGGAACTTCGTTGTCAATTATGTAATGAAGCGTACGATTCCTTCCGACCCTTAAATGTACATATGAACAAACATTACAAGAAACATATATGTCCTGTCTGTGGTAGTACATTCTCAAACTCTGTACTCCTAACTCTGCATAAAACGAGATCGCATCGTATATGGCGATGTACACAATGTAATATAACATTCCCAACGAACGGTGAAAAGATACGTCACGACGTATCGATACATGAGAAGAAAGTAGAAAAAAAATTAAGATTCCCTTGTAAATATTGTCAAGAACGGTTCTCACAAGAGAATAATCGAATACTACATTTAGTAGTCGCACACGGTTTAACCAAACCTGAACATAAATGTCAAATTTGTTTAAAAGTATTCATTACGCGAAGTTTACGAAACAATCATTTCAAAAACGTGCATCAAAAGGAAAGGAATATCCAATGTGACATCTGTCAACGTCTATTTTACACCAAGTCTGACGTCACGAGGCATAAACTAACGCATACCAAAGAGAAGAAAGTCGCCTGTGCGGTTTGTGACACATTGTTTGCGACTAAAGACTCCTTGCATAAACACATGAAGAGAATACATACAAATATATCAATAAAATAA
- Protein Sequence
- MIYITLGSKDKIENFTSPGIQTGGGQGAFTGIWEMTLSERQNAATLLENTTITPFVYCRYYFKCFFCQQQYSDINNLLEHSKTHEMPDKATILKELIPKGKRTVKVDIANLKCKICERLFTDINQIREHLTSDHSINFTPSDNGVVAYNLTPKNGQFLCHVCDKLFQTFILLNRHLNVHFCNAICETCGAGFITHQRLLQHKEIHSGGYPCTKCNKVYTTNSNLKYHIEKYHQGGTKRLLRCTHCSERFTEHFRKLKHLKAVHGITFSFECEICKLVLTSRRSLTMHTNKYHTLKTQCEVCKKSFSCVTTLKKHMISHTGERNFVCKICDKSYRHKKSLKQHLRIHDTRVTSTGSEDSRKRKIIYISIPQRNNTELILEHSTAYPFKTRYNRVLCAYCHKEFEILSELKIHMDTNHIDGDYKKILYNLKGNLMKIDISHLICKLCTQKFHGIKDLMDHFSQMHNLPVNLNESFGVLPYKYTDKHWICVSCGRTYSTFIDIKRHTSTHFMNYNCDKCGTTFISYQALKDHQRQVKCYRTAYNARNGRVMRPRSNAEIILQCSSAYPFRTWMSNLYCIFCRLKTRDPVFFRSHMATEHDTYDVKTAFYKKLKKSFLNVDITDLKCKLCSRNIEKFEQLIDHLKDDHHQPIKSDAQSGLLPFRLCDGSSWNCAICNNSFTNFDILRKHTQSHYHNYVCDTCGEGFITESALLTHNKIPHENKYTCSRCIATFSSLTERNNHVKTQHTSKPYVCLNCDDKPRFSSWEMKKKHQMLVHNYGSDGDSYAYYSKEEIIIEELIKEEREVINDDRKEKNNDIDSCEEQKPQKTLSARSYASFIRKDTLNIVENSTVCVFQWNKSWYICYLCKKNFINIDALREHTDMHTIKELEEKIISQQNRMVKVDISKLFCKICKKQLNDLLELRHHLKKHNIKFYLNDDLLMPFKINKELRCQLCNEAYDSFRPLNVHMNKHYKKHICPVCGSTFSNSVLLTLHKTRSHRIWRCTQCNITFPTNGEKIRHDVSIHEKKVEKKLRFPCKYCQERFSQENNRILHLVVAHGLTKPEHKCQICLKVFITRSLRNNHFKNVHQKERNIQCDICQRLFYTKSDVTRHKLTHTKEKKVACAVCDTLFATKDSLHKHMKRIHTNISIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -