Pbia002878.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3449361-3461992[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 47 2.1 1.4e+02 3.0 0.4 2 23 2 24 1 24 0.94 2 47 6.1e-07 4.1e-05 23.6 0.5 1 23 122 145 122 145 0.93 3 47 0.037 2.4 8.6 1.0 3 23 179 200 177 200 0.89 4 47 0.0091 0.6 10.5 2.5 1 23 207 230 207 230 0.90 5 47 0.0018 0.12 12.7 0.7 1 23 235 257 235 257 0.97 6 47 0.00012 0.0082 16.3 1.3 1 20 263 282 263 285 0.93 7 47 0.00043 0.028 14.7 0.4 2 23 324 346 323 346 0.96 8 47 0.001 0.068 13.4 1.3 1 23 441 464 441 464 0.95 9 47 1.3 88 3.7 0.4 3 23 502 523 501 523 0.92 10 47 0.21 14 6.2 0.5 2 23 551 573 550 573 0.91 11 47 0.08 5.3 7.5 2.0 3 23 598 618 596 618 0.96 12 47 0.00061 0.04 14.2 0.6 1 23 622 645 622 645 0.98 13 47 1.1 73 3.9 0.3 2 21 650 669 650 670 0.95 14 47 0.059 3.9 7.9 0.4 1 23 677 700 677 700 0.94 15 47 4 2.7e+02 2.1 0.3 3 20 761 778 759 782 0.78 16 47 6.8 4.5e+02 1.4 0.2 1 23 805 828 805 828 0.91 17 47 0.0029 0.19 12.0 0.2 2 23 852 873 851 873 0.96 18 47 0.13 8.9 6.8 0.2 2 21 878 897 877 898 0.92 19 47 1.4 96 3.5 0.2 1 23 939 962 939 962 0.93 20 47 0.31 21 5.6 0.2 2 23 988 1010 987 1010 0.95 21 47 0.042 2.8 8.4 0.9 2 23 1034 1055 1033 1055 0.94 22 47 0.0024 0.16 12.3 0.0 1 23 1059 1082 1059 1082 0.97 23 47 0.49 33 5.0 0.9 1 23 1086 1109 1086 1109 0.98 24 47 0.35 23 5.5 0.1 1 20 1181 1200 1181 1202 0.94 25 47 0.47 31 5.1 1.6 3 23 1231 1251 1230 1251 0.95 26 47 0.013 0.84 10.0 0.4 2 23 1274 1295 1273 1295 0.97 27 47 0.016 1 9.7 0.2 1 23 1299 1321 1299 1321 0.95 28 47 1.3 83 3.7 0.7 1 21 1326 1346 1326 1349 0.80 29 47 0.033 2.2 8.7 2.6 3 23 1357 1378 1355 1378 0.95 30 47 0.26 18 5.9 0.1 1 23 1462 1485 1462 1485 0.94 31 47 0.0052 0.34 11.2 0.6 1 23 1556 1578 1556 1578 0.98 32 47 0.00022 0.015 15.6 0.5 1 23 1582 1604 1582 1604 0.97 33 47 0.018 1.2 9.5 0.1 1 21 1638 1658 1638 1661 0.89 34 47 1.6 1.1e+02 3.4 1.2 1 23 1723 1745 1723 1745 0.88 35 47 1.9 1.3e+02 3.2 0.4 3 23 1772 1794 1771 1794 0.88 36 47 0.0015 0.097 13.0 0.2 1 23 1815 1837 1815 1837 0.97 37 47 0.59 39 4.8 0.2 1 13 1841 1853 1841 1855 0.90 38 47 0.022 1.5 9.2 0.2 1 23 1892 1914 1892 1914 0.96 39 47 1.2 77 3.8 0.0 2 23 1938 1960 1937 1960 0.91 40 47 0.011 0.74 10.2 2.5 1 23 1982 2004 1982 2004 0.98 41 47 0.0014 0.093 13.0 1.3 1 23 2008 2030 2008 2030 0.96 42 47 0.0071 0.47 10.8 4.2 2 23 2038 2060 2037 2060 0.96 43 47 0.011 0.73 10.2 3.3 1 23 2066 2089 2066 2089 0.98 44 47 0.15 10 6.6 3.5 1 23 2095 2118 2095 2118 0.93 45 47 0.0044 0.29 11.5 0.2 1 23 2124 2146 2124 2146 0.96 46 47 2.6e-06 0.00017 21.6 0.8 1 23 2152 2174 2152 2174 0.99 47 47 0.00095 0.063 13.6 6.0 1 23 2180 2202 2180 2203 0.96
Sequence Information
- Coding Sequence
- ATGGTTTGCGTGTATTGCTGCGAAACCTATGACGAACCCAAAGATTACAGGACCCATATGGATGTGGAGCATACAAAATTCAAAGTGGACACTGCATTTGCTCATATACATAATAATTACAACGAGTACTTAAAAGTCGATTGTGAAAATCTTTCGTGTAGGTTGTGCTCTGATACATTCGACGACCTCTGTTCGATTGCAGAACATCTCGTCAAAATACATGGAATAAAAATAAATCTGTCCACTGAGATCGGCATGCAGATGTTCAAGCTTGGCGATGAGAGATGGGTATGTGCGATTTGTAGGGTAAAGGTGCCTTGCCTTAGGTCGCTGAGTAGACACACCACTTCCCACTATCACAAATACACGTGCGAGACTTGTGGGAAATCGTACTCGAATCGAGAGAACCTGACGCGTCACATCGCCTTTGGTCACAGCAAATTGAAAGTTTGTATCCGCTGCAAGAAGTCCTTCCCCAGCTGTGAAACTAGGCGGGAACATGTGTTGGCTTCCAAAAAGTGTTGGCCCATGTGCTGTAATATATGTGGGGAGAGGTTCCCTAATAGGAAAGCCAAATTTAACCATCTCGCAGACGTGCATGAGCAGTCCCCTAAGATACACACGTGTCCCGAGTGCGGACAACAGTTTGAGAAGTGGCACATGTATCGGAGCCATTTTGTTGTCACTCACACCACGAATAGCTATCAATGTTCCTTCTGCGAGCAAAAGTTTGATGTTAAGAGAAATCTGTTGGAACACCAAGTTGTACATACGAGAGAAAAGGCACATCCGTGTACAGTTTGCTCAAAGATGTTTGGCAGAAAGAAAAACCTGCAGCAACATATGTGGATACATAGAGAACAAAAGAGATTTGAGTACCTTGATCCGTTTACCATCGCGAGACGAAACGCCGAGATAGTCGTGAAATATGCGACAGCGTACCCGTTCAGGCTACCGGAAGATGCCATGGTGTGTGTGTACTGTGGCGAGAGTTGCGACGATCCCACCGAGTATAGAAAGCACATGGACACCGAACATCAGACGTTCCATGTCCGAATGGCTTTCGTCCATTGTAACGAAGGTTACATCAAGGTCGACTGCACAGACCTACGATGTCGCATCTGTTTGCTAAGATTCGACGCAATCGATGACATAGCAAATCATTTGAAGGAAATGCACCAAGAGAAAGTTGATATGAATTATGAAATCGGCGTACATCCGTTCAAACTTGAGAAAGACCGTTTTCTATGCGCTATATGTCGCTTGAAGTCACCGTGCATCCGTCAGCTTAGTAGGCACATACAAACACATTTTTTGAAATACACATGCGAAGCCTGTGGAAAATCGTACGCAACGATCACTACTTTAAAACACCACATTACCTACTCGCACACGGGTGGAGCCCTTACGGAGAGCAACGCACAGAAGGCGAAACGGAATGCCGGAGTTGTTTTAGAGTACTCTACGGTATATCCGTTCAGGCTGCACGGGAAGCATTTACTTTGCGTTTACTGCTGCGAAGAGTACACTGATCCGGCGCTCTATAGAAAGCACATGGATGAGATGCATCAAACATTCTCTATATCGGTGGCATTCGCTCACTGTGGCAAGGGAAACTTTAGGCATCTCAAAGTCGATTGTACAAACTTAAAGTGTAGACTTTGTAATCGACCCTTTGACACCTTAGCTGAAATCGTTACACACATAGATCTTTGCCACCCGACAAGCAAACTCGATACGAAACACGAAGTTGGCCTACAACCGTACAAGATAGACAAAGACAGGTGGAACTGCTACTTGTGCAGTATGCGCTTTCCGTCTTTAATCACATTATGCCGGCACACGAACTCACACTACCAGAAATTTACATGCGAGAACTGCGGTAGAAGTTATTTAACTCGCGAAGCACTTACTTATCACATACGCTCCAGTCATTCGGAGAAGCCGCAGTGCAGGAAGTGCTGGCAGGAGTTTCCTACCATGGAAATGAAACGTGAGCACATGAGACTATCGAAAGCATGCTGGAGGTTCGTCTGTACGAGCTGCAGCGAACGTTTTATGTCTTCGGAAGCGAAACAGAAGCATATGACGGCGGCGCACGGTCGCCCTAAATCAACGTACACCTGGCCCAGAAAGGAACTCGATGGATTAAAGAAAGAGAATAAACCAAAAAGACTGTTTGAAAGGTCTGTCAACCAGAACCCCGTGCGGCAAAACGCCGTGCTTATATTGAAGCATTCTACCGCGTTCCCTTTTAAGACACGTTTTAACAGAATCATTTGCTCCTATTGTCACGAGGAGTTTCAAAACATGACAATACTCCGCGAACACGTTACGGCCGATCACTCAAATGCAGACTTCAATAGTGCCTTTTACAAAGTTATAGATGATCTTAAGATAGATATTACCCAATTCAAATGTAATCTTTGCTCAATTGACATGGCGAATGTTGACACGTTCATGACACATGTATCTAGGGATCACGGTATATCGGTTAATTTTGATGTACCCTTCGGCGTGCTACCTTACCGGCAGGGGCCCACCGGACTTTGGATGTGTTTAGACTGTTACAAAAGTTTCGCAGAATTCTCCCAAATCAACGCACATCTGAGAAGTCATGTCAAAATTTTAACTTGCGATAAATGCGGAGCCACGTTTCTATCCAAACAGGGATTGCGACAGCACGAGAAGAGTTTCAAGTGTAACAAGGCGTCGTACAAACCACGCTTTGGTAAAGCCCTCAAACATCGAAGCAATACCGAAATAATCCTGCAGTGTTCGACTGCTTGCCCTTTTCGGACTTGGGGACATAATTTCAACTGCGTATTCTGCCGAGTTCAGTCCAATGATCCCGTTGGACTAAGAACTCATATGGCTAATCGACACGCGAACTTTGATATACAACTCGTGTTTAGTAGGAAATTGCGAAAGGACTTTCTCAAAGTAGACATAACGGACCTACAATGTAAGCTGTGCTTTATGCCAATAGACACCCTTGATGATTTGATGACACACCTCAAAAACGACCACAAGCAACCTCTGAACTTTGACGTTCAACCGGGCGTGTTACCGTTTAAACTGAACGACGGCTCCAGCTGGAATTGCGCTATTTGCAAAATGCAATTTTCAAATTTTCTATCCCTTAAAAAGCACACGTCGGAACATTTCCACAATTATGTATGTGATGCTTGCGGCGAAGGATTTATAACTGAAAACGCTCTGGTGGCCCACACCCGAATACCACATGACAATAAGTACAAGTGCAGCCGCTGTATAGCTACGTTTACAACACTAGAAGAAAGGAACTTACACGTTAAAACCCAGCATACGAACATGCCCTACATGTGTGTGTACTGTAAAGACAAGCCAAGGTTCGGATGTGAAGAACAAGTCGGAAGAAAAAGTATTGTTAAATTAAAATCTAATGAACAACGCTACAAGAGAAGCGCCAGAGCTGAGGCTAGGATCGCTACAAAGGGAAACGCCAATGCCCTATTAGAATGTTGGTCCATTTGTCCCTTCACGTGGCATTGGAGCCGATTCAAATGCGCCTACTGCGAGGAAGGCTTTCTGCAGTGCGCCGAGCTCAGAGCGCACGTTGCTGAGTGCGCGCTCAAGCATAGCTTCAAAGATATTTATAGCAACTACAAAGAAATGACCCTCATCAACGTAGACGTGACCGAGGCCGCTTGTCGCGTGTGTGGGTGTCCTTATTCGAACGTCGTCCACATGCGACAACACGTGACCCAACACGGCTACCAGTTGGATAGCGCACAGCCCGATGGTGTGCTACCGTTCAGATTGGATAAGGATGACTGGCGATGCGTCATCTGTCGAGAGTCTTTCAACAATTTCCTTAAACTATACGAGCATATGAACGTCCACTACCAGCACTACATCTGTGCCACATGCGGCAAAGGATTTATGACGGCGTTGCGTCTCAGGAAACACTCTGAAGTCCACGTGACCGGATCCTTTTCCTGCGACAAATGCGCTCGGGTTTTCACGATGCGCGCCGCTAGAGACCACCACAAAGCCCAGGCCCACTCTAAAGGACCCCGCTACGGCTGTCCCCATTGTAATATCCGCTTCAACTCCTATTACCACAGGATGAACCATTTAAACGAGGCCCACAAGGAAAAATGGTTTTATACAAATGTAGCGTGTTCCGCTATTGCGGACGAGACGGCAATCGAGGTAGTTAAGCCTGTTAGGAAGTTAAAAGAGAACGTAAGCGCACGACAGATGCGCAGGCGCCGGCGCGCCAACAATGAACTGCCCGAAGAGTCCGACAAGCGGATCGCTAAAACTATGATGAGAAGGAACGCGATGACGATTCTAGAATGTTCCACCGCGTGGGCCTTTAGATGGTTCCACAGCGCTTTCTACTGTTCCTATTGCGATGACAAATTTGTAGATGCACTCCCCTTGCGTGAACATGTAATCAGCTCCCATTTAAATGATCCTCCAACTGCACGGATATTTGCAAAACTGACAGAAAATAACATGCTCAAAGTAGATGTAACAAGTTTAAACTGTAGGCTATGTAACTGTGTTTGTTCCACCATAGATATACTCATGGACCATCTGACAAGAGCACATAAAAAGATATTTAATATCAATTATAGCAAAGGTGTTTTACCTTTTAAACTAGATCAGACAAGATTTAGCTGTCAAATATGTTTGGAAATATTCTCTAGTTTCTCCAAAATAAACGAGCACATGAATTCTCATTATCAAAATTATATTTGTGACGCATGCGGTAAAGCTTTCGTCTCCAAATCCAGATTCAGGACCCACGTGCAGTCACACGAAATTGGTAACTTTCCTTGCGGCGATTGTGATGAAGTTCTCCAAACTCGAGCGGCTCGAATGTGTCATAAATTGAAAGTCCATAAAAGCGGTATTCGGTACGCTTGCCCGCGCTGTCCCGAAGTATTTACTACCTACTACGCTAGAGCTAAACATTTGGTTGACAGCCACGCACAGCAAAGGAGAGATTACGAATGCACGACGTGCGGAGATGAAGAAAATAGTGCCTCACAAAGTACACCAACGGATAACGTTAAATGGAGCAGAAAACGGAAGCTGGCGGAAGAGAATGTTAATGCAGCTATTATTCTAGAACATTCGAATACCGTAGTGTTTAGATGGAATCGAGGAAAATTCATGTGTGCCTACTGCCCCTGTACCTACACCAGCGTCAAAGAAATTCGCCTTCACTCGGAGGACCATAAAAATAAACTTGATGTATTTTTTTATAATCCAGAAGTACGTAACAAATATCCCCTTCGAGTTGATGTAACAGACCTTTGTTGTATTATTTGTAATGAGAAGATTGAAAATTTAGAAGCTCTGAAGAAACATCTATCAGAGATACACAACAAAACTTTTAATTCGAATAGTATTAGTTTGGTGCCTTTTGTGCTGACAAATGAGAAGTATTCGTGTGTGGCTTGCGGTAAATTTTTTGAGACTTTGATGGCCTTATTTTCACATATGAACGAACATTACTCCGACTACGTTTGCTACACATGTGGCAAAGGATATTCGAGAGCCATGGATAGCAATGTTAAGTGGAAAACCGGTCGCAAGTTAAACGATGTCAGAGATAACGCTGCTATTATTATAGAGTGTTCCAACGTGTGCCCGTTTAGGTGGAGATGGGGGCAATTTATTTGTGCTTACTGTCCCACATCTTTTGGAGATTTTAAGGGCTTCAGAGAGCACGTGGCCAAACATTCGAAAACGGAAGAAGCGCCTAGATTGTCGCGTCCTGTGAACACCACAAAAGCTGAGGTCTCGGACCTTCAGTGTGAATTGTGTACAAATAAACTCAAAGATCTAGACGAACTTGTCGAGCATTTGATCGATGTTCATAATAAACCCATAGTAAAAGCGTACGGCGTAGGTATCACACCGTTTTACCTCAACGGTGATGAATACATCTGCACTAAATGCGGTGTACACTTCGATCTGTTCACCAAACTGAACTCTCATATGAATAATCATTCTACAGACCATATATGCTACAAATGCGGCAAGACTTTTTCTGGCGCGATCCGTCTCAAGTCGCACCTGGTCACACACGAGTTGACAGGGGAAGGATGCAAGTGCTCGAAATGCGGTGAAACTTTCGCGAACCACAAACTAAGGGCGACACACATGTCGACCGTGCACAAGCCCAAGTTGAGGTATAGGTGCACCTACTGTAAGGAGAAATTTAAAGAATATAACGAAAGAGAAAAACATCTCAAAAAAGTACACGATAAAAAACGTGAGCATGCGTGTCACTTATGTACGGCTGTGTTTTCTACATTCAATCAACGGACAAGGCATATTCAGTTTGTTCATTTAAAATTGAAACCGTTCCAATGTCCGGTGTGCCCGTACAGATCGTCGACGAAGGCGTTGATGACAAACCACGCTGTGAAACACGATGGCACAAGGAAGTTTCAATGCGATGTGTGCTCGAAATCTTACGCCCGGTTAAAATCGTTGCGTGAACACATGCGCATCCATATTAACGACAGGCGCTTCTCCTGCGAGTATTGCAGCAGCGCGTTCGTGCAAAAGTGCAGTTTGAAAAGCCACATGAAAACACACCATCCGAGGGCTGTATCTGAAACTAAAGACCTGTAG
- Protein Sequence
- MVCVYCCETYDEPKDYRTHMDVEHTKFKVDTAFAHIHNNYNEYLKVDCENLSCRLCSDTFDDLCSIAEHLVKIHGIKINLSTEIGMQMFKLGDERWVCAICRVKVPCLRSLSRHTTSHYHKYTCETCGKSYSNRENLTRHIAFGHSKLKVCIRCKKSFPSCETRREHVLASKKCWPMCCNICGERFPNRKAKFNHLADVHEQSPKIHTCPECGQQFEKWHMYRSHFVVTHTTNSYQCSFCEQKFDVKRNLLEHQVVHTREKAHPCTVCSKMFGRKKNLQQHMWIHREQKRFEYLDPFTIARRNAEIVVKYATAYPFRLPEDAMVCVYCGESCDDPTEYRKHMDTEHQTFHVRMAFVHCNEGYIKVDCTDLRCRICLLRFDAIDDIANHLKEMHQEKVDMNYEIGVHPFKLEKDRFLCAICRLKSPCIRQLSRHIQTHFLKYTCEACGKSYATITTLKHHITYSHTGGALTESNAQKAKRNAGVVLEYSTVYPFRLHGKHLLCVYCCEEYTDPALYRKHMDEMHQTFSISVAFAHCGKGNFRHLKVDCTNLKCRLCNRPFDTLAEIVTHIDLCHPTSKLDTKHEVGLQPYKIDKDRWNCYLCSMRFPSLITLCRHTNSHYQKFTCENCGRSYLTREALTYHIRSSHSEKPQCRKCWQEFPTMEMKREHMRLSKACWRFVCTSCSERFMSSEAKQKHMTAAHGRPKSTYTWPRKELDGLKKENKPKRLFERSVNQNPVRQNAVLILKHSTAFPFKTRFNRIICSYCHEEFQNMTILREHVTADHSNADFNSAFYKVIDDLKIDITQFKCNLCSIDMANVDTFMTHVSRDHGISVNFDVPFGVLPYRQGPTGLWMCLDCYKSFAEFSQINAHLRSHVKILTCDKCGATFLSKQGLRQHEKSFKCNKASYKPRFGKALKHRSNTEIILQCSTACPFRTWGHNFNCVFCRVQSNDPVGLRTHMANRHANFDIQLVFSRKLRKDFLKVDITDLQCKLCFMPIDTLDDLMTHLKNDHKQPLNFDVQPGVLPFKLNDGSSWNCAICKMQFSNFLSLKKHTSEHFHNYVCDACGEGFITENALVAHTRIPHDNKYKCSRCIATFTTLEERNLHVKTQHTNMPYMCVYCKDKPRFGCEEQVGRKSIVKLKSNEQRYKRSARAEARIATKGNANALLECWSICPFTWHWSRFKCAYCEEGFLQCAELRAHVAECALKHSFKDIYSNYKEMTLINVDVTEAACRVCGCPYSNVVHMRQHVTQHGYQLDSAQPDGVLPFRLDKDDWRCVICRESFNNFLKLYEHMNVHYQHYICATCGKGFMTALRLRKHSEVHVTGSFSCDKCARVFTMRAARDHHKAQAHSKGPRYGCPHCNIRFNSYYHRMNHLNEAHKEKWFYTNVACSAIADETAIEVVKPVRKLKENVSARQMRRRRRANNELPEESDKRIAKTMMRRNAMTILECSTAWAFRWFHSAFYCSYCDDKFVDALPLREHVISSHLNDPPTARIFAKLTENNMLKVDVTSLNCRLCNCVCSTIDILMDHLTRAHKKIFNINYSKGVLPFKLDQTRFSCQICLEIFSSFSKINEHMNSHYQNYICDACGKAFVSKSRFRTHVQSHEIGNFPCGDCDEVLQTRAARMCHKLKVHKSGIRYACPRCPEVFTTYYARAKHLVDSHAQQRRDYECTTCGDEENSASQSTPTDNVKWSRKRKLAEENVNAAIILEHSNTVVFRWNRGKFMCAYCPCTYTSVKEIRLHSEDHKNKLDVFFYNPEVRNKYPLRVDVTDLCCIICNEKIENLEALKKHLSEIHNKTFNSNSISLVPFVLTNEKYSCVACGKFFETLMALFSHMNEHYSDYVCYTCGKGYSRAMDSNVKWKTGRKLNDVRDNAAIIIECSNVCPFRWRWGQFICAYCPTSFGDFKGFREHVAKHSKTEEAPRLSRPVNTTKAEVSDLQCELCTNKLKDLDELVEHLIDVHNKPIVKAYGVGITPFYLNGDEYICTKCGVHFDLFTKLNSHMNNHSTDHICYKCGKTFSGAIRLKSHLVTHELTGEGCKCSKCGETFANHKLRATHMSTVHKPKLRYRCTYCKEKFKEYNEREKHLKKVHDKKREHACHLCTAVFSTFNQRTRHIQFVHLKLKPFQCPVCPYRSSTKALMTNHAVKHDGTRKFQCDVCSKSYARLKSLREHMRIHINDRRFSCEYCSSAFVQKCSLKSHMKTHHPRAVSETKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -