Pbia002853.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3177181-3196352[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 40 0.0052 0.34 11.2 6.2 1 23 204 226 204 226 0.96 2 40 0.035 2.3 8.6 1.9 3 23 253 274 252 274 0.97 3 40 0.0099 0.65 10.4 0.8 1 23 295 317 295 317 0.98 4 40 0.29 19 5.7 1.7 1 23 321 343 321 343 0.81 5 40 2.6 1.7e+02 2.7 1.8 1 23 347 370 347 370 0.93 6 40 0.18 12 6.4 3.8 2 23 377 399 376 399 0.94 7 40 0.44 29 5.2 0.3 3 13 408 418 407 422 0.83 8 40 0.3 20 5.7 1.1 1 23 456 478 456 478 0.94 9 40 1.4 94 3.6 0.1 2 23 507 528 506 528 0.96 10 40 0.18 12 6.4 0.5 2 23 549 571 548 571 0.91 11 40 0.0018 0.12 12.7 1.7 2 23 577 599 576 599 0.95 12 40 0.013 0.83 10.0 1.8 1 23 604 627 604 627 0.93 13 40 0.29 19 5.8 0.7 3 23 631 652 629 652 0.91 14 40 0.017 1.1 9.6 2.0 2 21 659 678 658 679 0.94 15 40 0.0072 0.48 10.8 0.3 1 23 738 761 738 761 0.93 16 40 0.00062 0.041 14.1 3.0 2 23 827 848 826 848 0.96 17 40 0.031 2 8.8 0.1 2 23 876 898 875 898 0.91 18 40 0.012 0.81 10.1 1.1 1 23 918 941 918 941 0.96 19 40 0.0002 0.013 15.7 0.4 1 23 946 969 946 969 0.96 20 40 6.4e-05 0.0042 17.2 3.6 1 23 974 997 974 997 0.95 21 40 0.00037 0.025 14.8 3.3 2 23 1000 1022 1000 1022 0.97 22 40 0.22 15 6.1 2.9 2 21 1029 1048 1029 1049 0.94 23 40 0.32 21 5.6 2.3 1 23 1101 1124 1101 1124 0.93 24 40 1.5 99 3.5 0.1 2 23 1152 1174 1151 1174 0.89 25 40 2.6 1.7e+02 2.7 0.1 2 23 1197 1220 1196 1220 0.92 26 40 0.0001 0.0068 16.6 0.3 3 23 1227 1248 1226 1248 0.94 27 40 0.078 5.2 7.5 8.7 2 23 1253 1274 1252 1275 0.93 28 40 0.0095 0.63 10.4 2.8 1 23 1280 1303 1280 1303 0.95 29 40 7e-06 0.00046 20.3 4.5 1 23 1307 1330 1307 1330 0.97 30 40 0.00058 0.038 14.2 0.5 2 23 1337 1358 1336 1358 0.96 31 40 2.6 1.7e+02 2.7 0.2 1 23 1415 1438 1415 1438 0.92 32 40 0.014 0.94 9.9 0.3 2 23 1469 1491 1468 1491 0.95 33 40 0.0045 0.3 11.4 0.5 2 23 1514 1536 1514 1536 0.95 34 40 0.0043 0.29 11.5 1.5 1 23 1541 1564 1541 1564 0.95 35 40 0.038 2.5 8.5 1.0 1 23 1569 1592 1569 1592 0.93 36 40 0.0064 0.43 10.9 1.0 2 23 1598 1620 1597 1620 0.91 37 40 0.00065 0.043 14.1 0.3 2 23 1628 1650 1627 1650 0.97 38 40 0.037 2.5 8.5 0.1 2 23 1657 1678 1656 1678 0.96 39 40 3e-07 2e-05 24.6 1.7 1 23 1684 1706 1684 1706 0.98 40 40 1.1e-06 7.4e-05 22.8 1.4 1 23 1711 1733 1711 1733 0.98
Sequence Information
- Coding Sequence
- ATGGATTTTGATGATATTGTCGTGAAAGAAAGCCCGGGGCTATGCCGGTGCTGTCTTTCCGAAGGATGTTACAAAGATCTTAGTACTGAATATACATGGATGGACGATACAGAAATCTATGCCGATATGTTATTAGAATGCTTCGATATAAGTATATCACAACACAACGAAGGTCCCAATGGTGCCAACCGTCTTATATGCGAGGTATGTGTAACAAGGCTAAGAGATGCTTGCAACTTCAAGAAGCAGGTTCTGGCCTCGGAAAAGAAATTTGTTGATATGATTGGCAGGGGAGCGTTTAAACCTAAAGATGATATTGGACAAACTAGTACTGAGGATATTACCGTTTCAACTTTACCTATTAAAGGCAAAAAGGGGAAATCAAAAAAGACTGTCACTAAAACCGAGAAGAAGGGTTGTTCAAAAATAGTACTGGTGGAGAAACCGAAAGTATCAAAGCCTGTTACTAAAGGTGAGAATGAAGAGATTGTAGAGGCCGTGAATAAGTCCTCAATGACGTCAACGAAACGACATCGCCTTATGAAGAGGAATGCAATAATTATTCTAGAATCTTCCACAGTAATGCCCTTTAAATGGCACAGACAGAACTACTTATGTTTCTATTGTCATGAACATTTTAAAGATTATACACTTCTGAAGGAACATATGAAAAACCATAAAGAACCAAGGATAAAATCAGCCGTTTCTTATATAAGGAGAGATGAAAAAGTTAAAATTGACATATCTACAGCTATTTGCAATATATGTGATTGCAAATTTGATGATTTTAATACAATGATTAGTCATCTTCAAACTACCCACAAAAAAATTTTTTCGGACACCGATTATGGTGTACTACCCTACAAAATATTAAATGATAGGTTTCAATGCGCCTTATGCGATGCAAATTTTCAATATTTTATCAAATTAAACCAACATATGAATTCTCATTATGAGAATTATATTTGCGAATTGTGTGGCAAATCTTTTTTAAGTCAAGATCGGTTACGTTGTCATTCACTTAGTCACGGTTTAGGATTTCATTGTAAAAGTTGTACTGAAATATTCGATTCTTTGACACAAAAGATAAACCACGAATTAAAAATTCACGATCGTAGAAAAATTATCAAATGCCTTTACTGTAATCAAACGTTTGAAAATTATACGAAAAGGAAAAAACATCATAATGAGGTACACGAAAAAGATATAACGGTAAATAACTGTCCTGTTTGTAATAAAACATTTAATATTAAAAGTATGACAAGGAATAATAAAGGAAATGAATCGTCATCGTTACGTAGACGAAAGAATCTTCAGACACTTTTCAACAATACAACAATAATACCGTTTAAGTGGCGTGGAAAATATCTCTGCTTCTATTGCAGTAAATATGTAACGGAGTATACAGAATTGAGAAATCATACGATATTACATGGTGATTGTTCCATACTTGATCATTCTTTAAAAGTGTTAAAAGGTGGTCAGAATATGGAGATCAAGATTGACGTGTCAAATATCACGTGTCTCATTTGTAATGACTCTTCTTCGTCAGTTGATGAAGTTATAAATCATTTAAAAAAACATAAACTCTTTTATGATAACGAAGTAGAAATGGCTATCGAAGAATATAATCTTGCAAATTTAAAATGTATATTTTGTGATGAAAAATTCACCTACTTTGGTTACTTAGTTTCACACGTAAATAAGGAACATCCGAAGAATTGTCTTATTTGTGATAAATGTGAGCAGAAATTTAATAAAAAACGAGATTTGTTTTCTCATATCAAAAACTATCATAAAGAAGGTGGTTATAAATGTGATTATTGTTCAAAAATATTTAATTCCTTAAATATATTAAGGAAACATAAAATTAATAGACATATGACGAATTGTGATATATGTCATTTAAAACTACCCACCGCTTCAATGAAACAGAAACATATGGTTTTAGAACATCCTGATAATGGGTCGTTACAATGTAATAATTGTTCAAGAGAGTTTCACACAAAACAAGGCCTAAAAATGCATTTAAAAAAATGTAAGGCAATTGAAGAACTTTTTGACTTCGGTGTCAAAAATGAAAACGATTCTATGGATTTGGATGACAGTTACGAAGATCCAAAAAGGCCTAGTGTTAAACAAATCAGAGAAAATATAGTGACAATTATCAATATGTCAACGGCTATCCCTTTTAATTTCTATAAAAATAAATTTAACTGCTTCTATTGTTCTAAAGATTTCCCAGATTCTGATGCAATGAGGGATCATACAATACTAGAACACCCTGTTTGTGATGTACAACAGAAATGTATTAAAAAATGTAGGGAATCAGTCGCTTGCGTTAAAATCGACATATCCACACTCGCATATGATATACCGCATGCCTACGAGAACTGTATCTCTGAGAGGCGACGACGGAATTTACAAATTTTATTCAACAACACTACCGTAATACCATTCAAATGGCGGGGGAAATGCATATGTTTCTATTGCGGGGAAAGCTACGCAGATTATAAAGATTTTAGAAAACATACCCGATCTCATGGTCCTTGTACAACTAAGGATTATTCCTTAAAATTAATAAAAGGTAGTCACGTTGAAATCAAAATTGATGTATCGGAAATAACTTGTGAAATATGTAATGAATCTTTTAAAGCTTCCAAAGATATAATCGAGCATTTAATAGAAACACATGCTTTGGAGTACGATAAATCAATAGATACACTTCTTCAAGAATATAGACTGATGGATTTTCAATGTCTGTACTGCGACTTACAATTCAAGTATTTTGGTTTCTTAATAAACCATGTTAATAATATGCATCCAAGTAATAATTATATATGCGATGATTGCGGAGCTTCCTTTAATAAGAAGAGAGATCTGGCTCTACATTTTCGACAGAACCATAAACAAGGAGGATATCCTTGTACAGAATGTACACAGACTTTCAAATCCCACAGTTTGTTACGTAAACATCAAAATGATTTCCATTTTAGGAAATGCAAACGATGCGGATCACACTTCACAACGTATAGTATGTTAATTAAACATATGAACTCAGAACATCCCGATGATGGGACAGCAAAATGTCCACATTGCTCCAAACAATTACATTCGCCGCAAGGATTAAAACAACATATACACAAATGTAAAGTCAACTTTTTTAAAAAAGACCCCGTAGATGACTTTACGGATGTATTACTGCAACCGAAAAAGAAACAAAATCTTAAACAAATAAGACAGAATATCCAATACGTTTTAAATATGTCTACAGCACTGCCGTTTAAATTTTTCGCTAAATATTGTTGTTTTTATTGCTCTAATAAGTTCGTCGAATTTGAAGAACTTAAAGCACACACTCTTTTGGAACATCCTATTTGTGATTTACATTCTAAAAGTATGATGAAATGTAAAGGAGAGAGAATAACAGTTAAGATAGATATAGCAAATTTAAGCTGTAAAATATGCGGCGAAAAAATAGACAATCTGGATATATTAATCGATCATTTAATTAAAAAACATAACGCAAACTATGATACGTCGATAACAGGTTGTTTGGAACCTTATAAAATAATAAAAGATAACATGCCATGTCCAATTTGCCCTAATCGTATATTCAGGTACTTTGGTATCCTCCTAAGACATATAAATTCGGAACACAGTAATAATAATAGAATCTGTGACTTTTGTGGCCGTAGTTTCAAAAGTGTTACCAATCTAAAAGTACATATAACTTACGCTCATACGGGTACTTGCGAATGTAACTTATGCAATACTAAATTTAAAAATCAATGGTGTTTAAGTCGACATAAAGCGAAACATCATAACGCTAAAGATTACAAATGTCCAAAATGTCCAGAATTATTTCAATCACAATATCATAAACAAAAACATTTAATTCAAAACCATGGTATTGGACATAAATGTAGCTATTGTGGTAAAATGTTCACTAGGAATTCCTTCATGAACGATCATATACGTAGGACGCATTTGAAAGAGAAAAATGTCGTATGTACCGTTTGTAAGGAAAGGTTTTTTGATAATTATCTATTAAGGATGCATATGGTTAAACACGAAGGTGAAAGGAAATTTAACTGTGGAGTCTGTGGTGCAAAAATTAGCACCGTCGAGGACGCGTATAAGAAAACAGAAATGGCACGTAAGTTGTGCATAAAAAGACGTAACGTGGAATACGTCCTGCAATATAGTAATGTGACACCTTTTATGTGGTACAAAGGGAAATACAGATGCTTCTACTGTTCAGAACCTATGAAAGATCCTGATATATTAAGAGATCATACAGCTAAAGTTCATCAGTTTGCAAATTTAGAACTAGTTGTATACGATAGAACGAAGAATAACAGAAATAGGGATGCAGCTGTTAAGATAGACGTGACTAATGTTTCTTGTAAACTCTGCTTTAAAGAAGTTAGTAATTTAGAACAGTTAATACACCATTTGATAATCGCACATGACGCTGAATACGACGTAAGCGTTCCTAATTGTCTGTTACCATTCAAATTAGATAAAGATCAACCGACTTGCCCCATTTGTGATATGAAATTTGTCTTCTTTGAATATTTGTTACGTCATTCCAACAAACTTCATCTTTCCCATGATTATATATGTGATGTTTGTGGTACTAGTTTTCAAGGGGAGAATCATTTGAAGATGCATAACCGTTATTATCATAGAGAAGGTGGTTATACTTGTGAACATTGTGGGATAACACTTACAACGCTATCAAAGAAGATATTACACGAGAAAAATGTACATATGGTTAATCTATCGACGTGTCCACATTGTCCGGAGACGTTTAAAAGTCCTTATTTTAAAAAGTTGCATCTAGCTAACGTCCATGGTGTTGAAGAATTAAAAATTAAATGTCCATATTGCTCTAAAGTCTACCCTCAAGAGAGTATTATGTCCAGACATATGAGAAGAGTTCATTTAAGAGAGAAGAATGTCGAATGTGAAATTTGTGGGGACAAGTTTTTTGGGCCGTACGACGTTAAGTTACATATGTTAAAACATAATGGTGATAAGAAGTTTGTCTGTTCAGTATGTGGGAAGAAATTTTCAAAGAAAAATAATTTAAATACCCACTTAATGACGCATGCGGATAAAAAGTTTTCATGTGAAATCTGTAATAAAGAGTTTACGAATCAGCAGAATTTAAAAATACACGTTAAAAAGCATACGGATGTTAAAAATACAATAGAATTAGAAGAAAAAATTGTTTTTGATGATTTGAATGAAACAGAAATTATACAGATGGAGTTTGTTAATGACGAAATCGAAGGCGCTGAATTAACTGGGAAATATATACAGTGA
- Protein Sequence
- MDFDDIVVKESPGLCRCCLSEGCYKDLSTEYTWMDDTEIYADMLLECFDISISQHNEGPNGANRLICEVCVTRLRDACNFKKQVLASEKKFVDMIGRGAFKPKDDIGQTSTEDITVSTLPIKGKKGKSKKTVTKTEKKGCSKIVLVEKPKVSKPVTKGENEEIVEAVNKSSMTSTKRHRLMKRNAIIILESSTVMPFKWHRQNYLCFYCHEHFKDYTLLKEHMKNHKEPRIKSAVSYIRRDEKVKIDISTAICNICDCKFDDFNTMISHLQTTHKKIFSDTDYGVLPYKILNDRFQCALCDANFQYFIKLNQHMNSHYENYICELCGKSFLSQDRLRCHSLSHGLGFHCKSCTEIFDSLTQKINHELKIHDRRKIIKCLYCNQTFENYTKRKKHHNEVHEKDITVNNCPVCNKTFNIKSMTRNNKGNESSSLRRRKNLQTLFNNTTIIPFKWRGKYLCFYCSKYVTEYTELRNHTILHGDCSILDHSLKVLKGGQNMEIKIDVSNITCLICNDSSSSVDEVINHLKKHKLFYDNEVEMAIEEYNLANLKCIFCDEKFTYFGYLVSHVNKEHPKNCLICDKCEQKFNKKRDLFSHIKNYHKEGGYKCDYCSKIFNSLNILRKHKINRHMTNCDICHLKLPTASMKQKHMVLEHPDNGSLQCNNCSREFHTKQGLKMHLKKCKAIEELFDFGVKNENDSMDLDDSYEDPKRPSVKQIRENIVTIINMSTAIPFNFYKNKFNCFYCSKDFPDSDAMRDHTILEHPVCDVQQKCIKKCRESVACVKIDISTLAYDIPHAYENCISERRRRNLQILFNNTTVIPFKWRGKCICFYCGESYADYKDFRKHTRSHGPCTTKDYSLKLIKGSHVEIKIDVSEITCEICNESFKASKDIIEHLIETHALEYDKSIDTLLQEYRLMDFQCLYCDLQFKYFGFLINHVNNMHPSNNYICDDCGASFNKKRDLALHFRQNHKQGGYPCTECTQTFKSHSLLRKHQNDFHFRKCKRCGSHFTTYSMLIKHMNSEHPDDGTAKCPHCSKQLHSPQGLKQHIHKCKVNFFKKDPVDDFTDVLLQPKKKQNLKQIRQNIQYVLNMSTALPFKFFAKYCCFYCSNKFVEFEELKAHTLLEHPICDLHSKSMMKCKGERITVKIDIANLSCKICGEKIDNLDILIDHLIKKHNANYDTSITGCLEPYKIIKDNMPCPICPNRIFRYFGILLRHINSEHSNNNRICDFCGRSFKSVTNLKVHITYAHTGTCECNLCNTKFKNQWCLSRHKAKHHNAKDYKCPKCPELFQSQYHKQKHLIQNHGIGHKCSYCGKMFTRNSFMNDHIRRTHLKEKNVVCTVCKERFFDNYLLRMHMVKHEGERKFNCGVCGAKISTVEDAYKKTEMARKLCIKRRNVEYVLQYSNVTPFMWYKGKYRCFYCSEPMKDPDILRDHTAKVHQFANLELVVYDRTKNNRNRDAAVKIDVTNVSCKLCFKEVSNLEQLIHHLIIAHDAEYDVSVPNCLLPFKLDKDQPTCPICDMKFVFFEYLLRHSNKLHLSHDYICDVCGTSFQGENHLKMHNRYYHREGGYTCEHCGITLTTLSKKILHEKNVHMVNLSTCPHCPETFKSPYFKKLHLANVHGVEELKIKCPYCSKVYPQESIMSRHMRRVHLREKNVECEICGDKFFGPYDVKLHMLKHNGDKKFVCSVCGKKFSKKNNLNTHLMTHADKKFSCEICNKEFTNQQNLKIHVKKHTDVKNTIELEEKIVFDDLNETEIIQMEFVNDEIEGAELTGKYIQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -