Pbia002866.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:3353381-3386048[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 50 0.051 3.4 8.1 0.4 2 23 100 122 99 122 0.93 2 50 0.0019 0.13 12.6 6.0 1 23 129 151 129 152 0.95 3 50 0.0032 0.21 11.9 0.8 1 23 158 180 158 180 0.96 4 50 5.9e-07 3.9e-05 23.6 1.8 2 23 187 208 186 208 0.96 5 50 0.00016 0.01 16.0 4.6 1 23 214 236 214 236 0.98 6 50 0.007 0.46 10.8 0.3 1 23 246 269 246 269 0.97 7 50 0.01 0.67 10.3 1.0 2 23 277 299 276 299 0.92 8 50 2.2e-06 0.00014 21.9 0.7 2 23 305 327 304 327 0.97 9 50 0.91 60 4.2 0.9 1 23 333 356 333 356 0.88 10 50 0.05 3.3 8.1 0.3 1 13 362 374 362 379 0.90 11 50 0.002 0.13 12.5 0.2 1 23 428 451 428 451 0.93 12 50 0.018 1.2 9.6 0.0 2 23 478 500 477 500 0.95 13 50 0.058 3.8 7.9 0.5 2 23 524 545 523 545 0.96 14 50 0.32 21 5.6 0.0 1 20 549 568 549 571 0.88 15 50 0.0031 0.21 11.9 2.8 1 23 576 599 576 599 0.96 16 50 0.26 17 5.9 1.0 2 23 607 629 607 629 0.88 17 50 0.00051 0.034 14.4 0.9 2 23 637 659 636 659 0.96 18 50 0.0025 0.17 12.2 4.5 1 23 665 687 665 687 0.97 19 50 7.8e-06 0.00052 20.1 2.8 1 23 693 715 693 715 0.98 20 50 0.064 4.2 7.8 2.1 1 15 721 735 721 737 0.88 21 50 0.015 1 9.8 0.5 3 23 810 831 808 831 0.91 22 50 0.26 17 5.9 0.4 2 23 857 879 856 879 0.95 23 50 0.19 13 6.3 0.7 2 23 902 923 901 923 0.96 24 50 0.0021 0.14 12.5 0.2 1 23 927 949 927 949 0.99 25 50 0.00029 0.019 15.2 1.9 1 23 954 977 954 977 0.98 26 50 0.0065 0.43 10.9 1.8 2 23 985 1007 984 1007 0.95 27 50 0.04 2.7 8.4 5.4 2 23 1015 1037 1014 1037 0.96 28 50 1.3e-05 0.00088 19.4 0.5 1 23 1043 1065 1043 1065 0.98 29 50 8.2e-06 0.00054 20.1 2.1 1 23 1071 1093 1071 1093 0.98 30 50 0.016 1 9.7 0.5 3 23 1201 1222 1199 1222 0.90 31 50 8.8 5.8e+02 1.1 2.8 3 23 1249 1270 1246 1270 0.90 32 50 0.4 27 5.3 0.7 2 23 1293 1314 1292 1314 0.96 33 50 0.00094 0.062 13.6 2.2 1 23 1318 1340 1318 1340 0.98 34 50 0.0012 0.079 13.2 2.0 1 23 1345 1368 1345 1368 0.97 35 50 0.017 1.1 9.7 1.0 2 23 1376 1398 1375 1398 0.95 36 50 0.001 0.068 13.5 3.2 2 23 1406 1428 1405 1428 0.96 37 50 0.016 1.1 9.7 1.2 1 20 1434 1453 1434 1456 0.90 38 50 2.1e-05 0.0014 18.7 2.7 2 23 1463 1484 1463 1484 0.98 39 50 0.0019 0.12 12.6 1.1 1 23 1551 1573 1551 1574 0.92 40 50 0.0068 0.45 10.9 0.5 2 23 1598 1619 1597 1619 0.95 41 50 0.12 7.7 7.0 1.3 2 23 1642 1663 1641 1663 0.96 42 50 1.5 1e+02 3.5 1.9 1 21 1667 1687 1667 1689 0.92 43 50 2.8 1.9e+02 2.6 3.2 1 21 1694 1714 1694 1717 0.73 44 50 0.24 16 6.0 0.9 2 23 1725 1747 1724 1747 0.93 45 50 0.00015 0.0098 16.1 1.1 2 23 1755 1777 1754 1777 0.96 46 50 0.0085 0.56 10.6 3.5 1 23 1783 1805 1783 1805 0.97 47 50 4.8 3.2e+02 1.9 6.3 1 23 1811 1833 1811 1833 0.98 48 50 0.0037 0.24 11.7 0.1 1 23 1928 1951 1928 1951 0.95 49 50 2.1 1.4e+02 3.0 1.9 2 23 1977 1999 1976 1999 0.93 50 50 0.0068 0.45 10.9 0.1 2 23 2021 2042 2020 2042 0.97
Sequence Information
- Coding Sequence
- ATGGAGACTAAAGCAATTGACGGCATGTGCCGGTGTTGTGCTTCGTCGGGTATTTTTAAAGACATGTATGCGACTTATAATTGGATGGGCGAAGACGAGATTTATGCAGATATGCTACAATATTGTTTTGATATGACATTATCGACAGCAGAGGATCACAATAATGGTGGTATTTGTGAAGTGTGCATAACACAATTACGGAATGCTGCCAACTTTAAGAAGCAAGTCCAACAAACGGAGATGCAGTTCAAGAAGTTGCAGGAAGAAAAGGAATTCAGTCGTGGCTGGTTGAGGAACAAATGTCCACATTGTCCGGAAATATTTGTTAGTTATTATGATAGAAGTGAACATTTAGTTAAAATACATAACGAAGCACCGATTATATATCCTTGTAATGCCTGTAATAGGACTTATAAGAAGAAATTTGAATTGAATCGTCATATAAAACATCATCATTTGCAACAGAAGAATTATCTTTGTGATAAATGTAATGCGAAGTTCTTTTCTAAGCGTGGCTTAGTTGATCACATGTTGAGACATACGGGGGCTGAGTTGTGCGCGTGCGATGTTTGTGGTAGATCGTTTTCGAGAGCACGAACCTTGAGGGAGCATATGCGGACTCATGATGATGATAAGAAGTTCCAATGCGAAGTTTGTAAGAAGACTTTTATGCAGAAGTGTAGTTTGAAGAGCCATGTACGTCTACATCAGGACGATTTGGATATATTCAAAGATTTTCCATGCCGTCAGTGTGGTCAAGTGTTTACCGCTGAATCAAAGAAGAAGGCACACGTTAATACTGAACATAAAGGTATTGCGGGTGATAGTGTTTGTCAGATCTGTAAAGCGAGGTTTAAGAATTATTATCAGAAGACAAGGCATATGGTTCAAATACATAATGTAGAAGGTATAAAATGCGATGTTTGTGATAAGAAATTTAATCTGAAATCCAATTTGATGCTTCATATGCGAAGTGTACATTTAAAGGAGCGTCCGTACGAATGTTCTGAATGTAATATGGGTTTTTTTATTAAGAGACATATGGTGGGACATTATCTGGCAACGCATACAAATGAGAGGAAATTTAAATGTGATATATGTGGTAAAGCATACGCGACACAGAATAGAAGACATCGTACGATGAGAAAGATTGGAACAAAATCAAGCGAAACGTTAGTCGATAAAAGCAAGGGTCGTGAATTAAGAAAACACAGGAATAATATCAGAGAAATATTAAAATGCTCGAATGCAACTCCGATACGATGTTACGCAGGTATCGGCTATGCATGTGCCTTCTGTGACAAACAGTATCCAGACCCTAAAGATCTCAAAACGCATACACTAGAAGACCATGATTCGAATACCAAGCGAAGTTTTATGGGTGGCAAACAGATGTTTTCATATATTGTTAAATTGGATATAACCTCGTTACAATGTAACCTTTGTGGAACTAATATATCCACACTAGAATCACTCATAGATCATTTGATTAGTGTACATAATATAAAATTTTATACAGATATTAAAAATCATATATTACCATTCAGATTCGATGAAAATTCATTTCTAAGATGCGTTTATTGTGTTACATTATTCAATAAATTCAAAGCGCTGCAGGAACATATGAATATCCACTATAGGAATTACATCTGTGATGTTTGTGATGCTGGATTCGTTAACAGAAGTATATTATTGAATCATGCAGGAGCACACAAAGTGGGTACATTCAAATGTGATTTCTGTGACAAAGTGTTTGATACGCAACGTAAGAAGAAATCACACGAAAAATCTGTACACATTCACTTCAATATGTTAAACAGATGTGGTTATTGTAATGAGAAATTTAAAACTTATAGTCGAAAATTGGAACACTTAGTTAAAGCACATGGCGTGCAATTGCCAATATTGAAGTGTCAAGCGTGTGACAAGCAATTTGAGACGCAAAAATCTTTGACTATCCACGTTAAACGGGATCATTTGTTGGAGAGGAAACACGAGTGCAAGATTTGTGATATGAAATTCTTCGTTACGCACCAATTGCAACAGCACATGATAAAGCATACAGGCTTGGCGAATTTCGTTTGCGAAGTTTGCCACAAAGCGTATAAGCGTAAAAAAACATTGAAAGAACATCTTCGTATTCATGCGGATGATAGACGGTTTAAGTGCAATCATTGTGGACAAGCGTTTGTTCAGAAGTGCAGCTGGCGTGGTGTGGCAGGATTGGCCAAAGTAGAGAGGAGGTTGTTACAGAATAGGAATTCTGCAAAGCCTATGTTATTGAAGTTTACAACCAGAATTGCTCCTGCCTCTTCTGTTTCTGATAACTTATTGACCGAGGCCAAGAAAAATCAACATAACCTGAGCATAATATTACTCAATTCCAACGCAAATCCTATCAGATGTAAGGACAGCCAGGGATACGGATGTGCGTTTTGTACAAAACAGTTTCCGCAACCGACCACGTTAAAAAAGCACTTCCTCGAAGAGCACAACAGCGATAGATTCATCAAATTTATGTCCAGTAAATTGTTTGAAAACGTCGTCAAACTAGACATTACGTATTTAAGCTGTGCGCTCTGTGATACCGATTTTTTACAGTTGAACGATTTCATCAAACATTTAAAAACTACCCACAAAAAAGAATTGTATGAAGATGTTAAGAGTGAAATCCTGCCCTTCAGGTTTGATACACCAGAACTGAGATGCGCCATCTGTTCGACCGAGTATACCACATTCAAGATCCTCCAAACACACATGAACCAACATTTCGGTAACTATACTTGCAACATCTGCGCTGGTGGTTTCGTCACCGAACGTTTGCTGCAAAGTCACATAAAACGTCACGGGAACGGCGAATACAGATGTAGTCAGTGTAATAAGTCTTTTCCGACCCAAAACAAAAAACAGGAACATATCCAAAGAGTCCATCTCGGCCTGAACAAGAGAAATAAGTGCAATCATTGCGATGAAAGATTTGTGGATTACTGGCAGAAGATTAAACATATGGTGAAGATGCACGGAGAGCCTCCAGTGGTTCTTAAGTGCCATGCGTGTGAGCGGACGTTCAACAACCAGAGGGTACTGTCCCGGCACCACAAGAAGGACCATTTGTTGGAAAGACGGTATCCCTGTTCAGAATGCGATATGAAGTTCTTCACTAGAAGTGCTTTGGTAAAACACATGGCGAAGCATACTGGACTCAGACAGTATAGTTGTGATATCTGTCACAAGTCATATGGCAGGAAGAATACACTTCGGGAACATATTAGGATCCATGCTAACGATAGACGCTACAAGTGTGAATACTGTGGACAAGGAAGATATATAGGTGAAGATTACCATAAACCAGAAGAATTAAAATTATCAATATTTAATAGGAAACATATCGGTGTGGCAGGATTGGTCAAAATAGAGGAGACTGGACAAAATGCAGATTCTACAAAACCTGTGGAATCGAAGGCTACGAGAACAACTCGTGCTCCGGTTCGTAGAAACCGCGCACTGACCGATGCCAAGAAAAATAAACATAATCTGAGCGTCATCCTGCGCAATTCTAACGCAAATCCCATTCGATTAAAGGATGATAATGGTTATGGGTGTATGTTTTGTAGCAAGAAGTTCCCGCAACCGCCTTCGTTAAAGAAACATTTCCTCGAAGAACACAACAATGATAAACTGAACAAATTAATAAGTAGTAGCTTCAACGACATCGTCATTAAATTGGATATCACCTACTTATGCTGTGTACTTTGTGATACAGAATTTTTGCATCTGAATGATTTCACCCAACATTTAAAGGCTAACCATAAAAAAAATCTGTACGTAAATTTTAAAACTGAAATCATACCCTTCAGATTTAACACGCCGGAATTAAGGTGTGCCATTTGCTCAGCCGAGTTTTTCACGTTCAAAATTCTTCAAACGCACATGAACAAGCATTTCTGTAACTATTCTTGCGAGACCTGCGGAGAGGGCTTTGTCTCCAAACATTTGCTACACGGTCACGTCAAACGTCACGGGGACGGTAAATACAAGTGCACGGAGTGTGAAAAAACTTTCTCAACCATAAATAAAAGAAAGGAACACCTTCAAAGAGTACATCTTGGCTTGAACAAGAGAAATAAATGCACTAATTGCGATGAAAGATTCGGTAGCTTCTCTCTGAAGACTAAACATATGTTGGAGGTGCATGGAGTGTCACCAGCTGTGCTTAAGTGTCAGGCGTGCGAGCGTACGTTTAACAACCAAACGGCCTTAACGAGGCACCACAAGAAGGACCATCTGTTGGAAAGACGTCATGCTTGTTCAGAATGCGATATGAAGTTTTTCACAAGTTTCGATTTGGTTATGCACATGCCAAAGCATACTAAAGTCAGGCAGAATACATGCGATATTTGCCACAAGTCGTATGGCAGGAAGACTACACTGCGAGAACATATGAGAATTCACGCCAACGATAGACGCTTTAAATGTGAATACTGTGGACAAGGTAAACAACATGAGAGAATATGCAAAGGAAAGCAAAGTGGAACAGAAAAGTCTATAGAGACAAAACCAATAAGAGAATTCAAGAAACGCCAAGAGAATCTACGATCTATCTTACAGTATTCAAATGCTAGTCTGATACGAGGAAAGGATTCAGATGGTTACAGCTGCATTTTATGTCCGAAGAGATTTCCTCAACCCAAAGATCTTAAAATACATTTCCTTACACACCACAATGATGTACATATAATGAAATTGCCAAAATTCAATGATTGTTTGCTGAAATTAGATATAACCGGTCTTAAATGTAAATTATGCGATAAATTGTTTGATAAATTAGAACTACTCACAGATCATCTATCAGAACATGGAAAAACTATATACAAGGATATAAATAACGAAATAATACCATTCAAATTCGATACGGAGGCTTTAAAATGTACTGTTTGTGAAGCTAACTTTACTACATTTAAAATACTTCAAGAACACATGCATGTTCATTATAGCAATTATTTTTGTGATGTATGCAACGCTGGTTTTATAAACAAGCGTCGTTTGGTCGGGCATAAACGTTGCCATGGAATCGGAAGCTTCAAATGTGGGTACTGCGAGAAAATATTTACATGCGACTCAAAACGACGCGACCACGAGCAGAGAATCCATTTAGGATTAAATAAGAGGAACAAATGTAAATTCTGCGATGAAAAATTCGCCGATTATTGGACTAAAGTCGATCACATGGTGAAGAAACATAACCAACCAAGGATGGTATTAAAATGTCAGGCTTGTGACAGAAATTTTGAGAATAAAAGAGCTTTAACTCGACATATAAAGAAGGATCATTTGATGGAAAGAACACACGTTTGTAGTGTGTGTGATATGCGTTTCTATCTTAAACATCGTTTGAAAGACCATATGCTGGTACATACTGGTGAAAAGGAATTTCAATGCCACGTTTGTTGCAGATGGTATGCAACTAAAAAGTCTATGAGACAGCATTTAAGATCTCATGCTGATAGAAGACTATCCTCTACATCTATGACAAATTTCATCGAGATCCATGAAGCGGATGAGGATACAATAACAGAAGATGGTATAGAAGATTCTACAGAATTAACTTTGAACAAGAAGAATTTCACAACATTAATCGCTATTAAGCCTCCAAGAAAAAAGAAAAGGAAAATAAAAAAAGCTACAAAAAAGCCTACCGAATTGGAATTCCATTTTGATAACATCAAATCTATTTTAAATTATTCAAACGCAACACCAATTAGGGGTCGAATAGGATCAAAATACGCCTGCGGGTACTGCACCAATAAATATTCAACGCCAGCAGAATTAAAGGAGCACACTTTGGTCCTTCACGAGTCGGATAAACCGGATTGTCTACGTGTCATGTCACTATCGAAATACATTGTGTATCTAGACATCACGAACTTAGAATGTACACATTGTAATATATCTATACATAAATTAAATGACCTTTTATATCATCTGAAAGAAGACCATGAAGAATTAGTACATACAGATATAAAAAATCATATAATACCTTTAAATTTTGCTAATAATTTGCAATGTGTGATTTGTTTGAAATCTTTTGCAGTGTTTGAAGAATTGTTAGAACATATGAGCTCGCATTATAACAATTATACGTGTGATTTGTGTGAGAACGCGTGGTTTATTAATAGAAGTCTCTTGTTAGATCATAAAAAGGCTGTACATTTTATTTGA
- Protein Sequence
- METKAIDGMCRCCASSGIFKDMYATYNWMGEDEIYADMLQYCFDMTLSTAEDHNNGGICEVCITQLRNAANFKKQVQQTEMQFKKLQEEKEFSRGWLRNKCPHCPEIFVSYYDRSEHLVKIHNEAPIIYPCNACNRTYKKKFELNRHIKHHHLQQKNYLCDKCNAKFFSKRGLVDHMLRHTGAELCACDVCGRSFSRARTLREHMRTHDDDKKFQCEVCKKTFMQKCSLKSHVRLHQDDLDIFKDFPCRQCGQVFTAESKKKAHVNTEHKGIAGDSVCQICKARFKNYYQKTRHMVQIHNVEGIKCDVCDKKFNLKSNLMLHMRSVHLKERPYECSECNMGFFIKRHMVGHYLATHTNERKFKCDICGKAYATQNRRHRTMRKIGTKSSETLVDKSKGRELRKHRNNIREILKCSNATPIRCYAGIGYACAFCDKQYPDPKDLKTHTLEDHDSNTKRSFMGGKQMFSYIVKLDITSLQCNLCGTNISTLESLIDHLISVHNIKFYTDIKNHILPFRFDENSFLRCVYCVTLFNKFKALQEHMNIHYRNYICDVCDAGFVNRSILLNHAGAHKVGTFKCDFCDKVFDTQRKKKSHEKSVHIHFNMLNRCGYCNEKFKTYSRKLEHLVKAHGVQLPILKCQACDKQFETQKSLTIHVKRDHLLERKHECKICDMKFFVTHQLQQHMIKHTGLANFVCEVCHKAYKRKKTLKEHLRIHADDRRFKCNHCGQAFVQKCSWRGVAGLAKVERRLLQNRNSAKPMLLKFTTRIAPASSVSDNLLTEAKKNQHNLSIILLNSNANPIRCKDSQGYGCAFCTKQFPQPTTLKKHFLEEHNSDRFIKFMSSKLFENVVKLDITYLSCALCDTDFLQLNDFIKHLKTTHKKELYEDVKSEILPFRFDTPELRCAICSTEYTTFKILQTHMNQHFGNYTCNICAGGFVTERLLQSHIKRHGNGEYRCSQCNKSFPTQNKKQEHIQRVHLGLNKRNKCNHCDERFVDYWQKIKHMVKMHGEPPVVLKCHACERTFNNQRVLSRHHKKDHLLERRYPCSECDMKFFTRSALVKHMAKHTGLRQYSCDICHKSYGRKNTLREHIRIHANDRRYKCEYCGQGRYIGEDYHKPEELKLSIFNRKHIGVAGLVKIEETGQNADSTKPVESKATRTTRAPVRRNRALTDAKKNKHNLSVILRNSNANPIRLKDDNGYGCMFCSKKFPQPPSLKKHFLEEHNNDKLNKLISSSFNDIVIKLDITYLCCVLCDTEFLHLNDFTQHLKANHKKNLYVNFKTEIIPFRFNTPELRCAICSAEFFTFKILQTHMNKHFCNYSCETCGEGFVSKHLLHGHVKRHGDGKYKCTECEKTFSTINKRKEHLQRVHLGLNKRNKCTNCDERFGSFSLKTKHMLEVHGVSPAVLKCQACERTFNNQTALTRHHKKDHLLERRHACSECDMKFFTSFDLVMHMPKHTKVRQNTCDICHKSYGRKTTLREHMRIHANDRRFKCEYCGQGKQHERICKGKQSGTEKSIETKPIREFKKRQENLRSILQYSNASLIRGKDSDGYSCILCPKRFPQPKDLKIHFLTHHNDVHIMKLPKFNDCLLKLDITGLKCKLCDKLFDKLELLTDHLSEHGKTIYKDINNEIIPFKFDTEALKCTVCEANFTTFKILQEHMHVHYSNYFCDVCNAGFINKRRLVGHKRCHGIGSFKCGYCEKIFTCDSKRRDHEQRIHLGLNKRNKCKFCDEKFADYWTKVDHMVKKHNQPRMVLKCQACDRNFENKRALTRHIKKDHLMERTHVCSVCDMRFYLKHRLKDHMLVHTGEKEFQCHVCCRWYATKKSMRQHLRSHADRRLSSTSMTNFIEIHEADEDTITEDGIEDSTELTLNKKNFTTLIAIKPPRKKKRKIKKATKKPTELEFHFDNIKSILNYSNATPIRGRIGSKYACGYCTNKYSTPAELKEHTLVLHESDKPDCLRVMSLSKYIVYLDITNLECTHCNISIHKLNDLLYHLKEDHEELVHTDIKNHIIPLNFANNLQCVICLKSFAVFEELLEHMSSHYNNYTCDLCENAWFINRSLLLDHKKAVHFI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -