Pbia010376.1
Basic Information
- Insect
- Papilio bianor
- Gene Symbol
- -
- Assembly
- None
- Location
- HiC:116403-120635[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 7.5 7.7e+03 -3.5 0.0 31 39 195 204 194 207 0.85 2 5 2.3e-10 2.3e-07 30.2 0.0 4 39 264 299 261 304 0.88 3 5 4.7e-12 4.8e-09 35.6 0.3 2 39 316 353 315 356 0.93 4 5 6.2e-15 6.4e-12 44.8 0.1 2 45 371 415 370 415 0.96 5 5 1.9e-16 1.9e-13 49.6 0.1 4 42 425 464 422 466 0.93
Sequence Information
- Coding Sequence
- ATGAGAGCGGGGCGCCGAGAGCGGCGCGGAGGGCGGCGGGCAGACGGCGCGCTCGGCCGGTTCCCGGCAAAAAGGCGTTTGTTTTTATTTCTTTGGCGCGGAAAAAAGAAGGAGCACGCGCCCGCCCTGCACCTCCTAAACATGCGCCACGCGGCGACGCAGAGCCGCCGCCGCGTGCCGATTCACTTTCATTTGCGACATCCCGCCTTGCGAAGGTCACCGTGCAGCGCCGGGAACAGGGAGCGCGGCAGGAGCGCGCCCGCACGCGCCGGCCTCCGCCCGCCGACTACCACTAGTTGTTTACGAGTTAATACATTGCAGTCCACCACCCTGTCGGACGTGAAAGTGGAGGTGGCCGAGCACACCGAGTACGCCGAGTACGCCGAGCAAGATGCCTCCACACACATTCTGCATCACTTGCAGGTGGGTGTTGGGCTGGAGCTGTGCCCGCCCGCGCCCGCCGCGCCGGCCGCGACACCGGTGCGCCCGCGTCGTTCACCGCTCGACACGCCCGCCTCGCCGCGCTCTCCGCACGCCGCCCACTGCTTCGAGACCCTCGAGCCCGCGCGCGCCGACTCCGGCACCACACTCCTCGATCGTCACCTGAGGCTGATTGCGGAGGCCGCGGAGCCCGATCTCATGCCTCTGCTGCCCGTCAAGGATGAACCGCTCTCGGAGGGGGAGCAGCAGGTGCTGAGCGACGAGGCGAGCTCGTGCGGCGGCAGCAGCGAGGGCGGGGAAGTTCGCAGCGGGGACTGCTCGCCCGGGCCTCGCGGCTGGAACCCGCGAGACATGCAGCGCGCGCTGCAGGCCCTGCGCGACCGACGCATGACTCTCACCAAGGCGTCGGCGACGTACGGCATCCCGTCGACGACGCTGTGGCAGCGCGCGCGGCGGCTGGGCATCGATACGCCGAAGCGCGAGGCGACCGCGCGCAGCTGGGGCGAGGCGGAGCTGCTGGCCGCGCTCGCCGCCCTGCGCGCCGGGACGCTCTCCGCCAACAAGGCCAGCAAGGCCTACGGCATCCCGAGCAGCACGCTGTACAAGATAGCGCGGCGCGAGGGCATCCGTCTTGCGGCGCCGTTCAACGCGGCGCCAACGCGGTGGCGTCGCGGCGACCTGCAGCGCGCTCTGGCCGCCATCCGCTGCGGCGCCGCGTCTGTGCAGCGCGCGGCGGCGCAGTATGGCATTCCGTCCGGCACGCTGTACGGCCGCTGCAAGCGCGAGGGCATCGAGCTGTCCCGCTCCAACCCCACGCCCTGGTCCGAGCGCGCCATGGGGGAGGCGCTGGACGCCGTCAGGGCGGGTCAGATGTCTATAAACCAGGCGGCGATCCACTACAACCTGCCGTACTCCTCGCTGTACGGCCGCTTCAAGCGCTGCAAGTACCAGCCGCAGTGTGTACAGTACCAACAGTCGGACACGCAGGTGAATTACGAGGTAGATCAAGGGGCGCAGCCGAGTGAGGAGTGGTTGGGGTACTACGGGTACTGCGGCGGGGCGGGCGGGGTGGGCGGGGCGTGCGGGGCGGGGCAGCAGGCTGCGGCGCTGTGGCCGGGCTGCGCTGGAGCCGACAGCTGA
- Protein Sequence
- MRAGRRERRGGRRADGALGRFPAKRRLFLFLWRGKKKEHAPALHLLNMRHAATQSRRRVPIHFHLRHPALRRSPCSAGNRERGRSAPARAGLRPPTTTSCLRVNTLQSTTLSDVKVEVAEHTEYAEYAEQDASTHILHHLQVGVGLELCPPAPAAPAATPVRPRRSPLDTPASPRSPHAAHCFETLEPARADSGTTLLDRHLRLIAEAAEPDLMPLLPVKDEPLSEGEQQVLSDEASSCGGSSEGGEVRSGDCSPGPRGWNPRDMQRALQALRDRRMTLTKASATYGIPSTTLWQRARRLGIDTPKREATARSWGEAELLAALAALRAGTLSANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTRWRRGDLQRALAAIRCGAASVQRAAAQYGIPSGTLYGRCKREGIELSRSNPTPWSERAMGEALDAVRAGQMSINQAAIHYNLPYSSLYGRFKRCKYQPQCVQYQQSDTQVNYEVDQGAQPSEEWLGYYGYCGGAGGVGGACGAGQQAAALWPGCAGADS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -