Basic Information

Insect: Panzeria rudis
Gene Symbol: -
Assembly: GCA_956483635.1
Location: OY101450.1:4121432-4130778[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 0.41 47 6.2 2.2 1 23 498 521 498 521 0.92

2 8 1.2 1.4e+02 4.7 2.0 1 23 526 549 526 549 0.91

3 8 0.00029 0.033 16.1 0.3 1 23 556 578 556 578 0.98

4 8 5.3e-05 0.006 18.4 3.7 1 23 583 605 583 605 0.98

5 8 0.001 0.11 14.4 0.3 2 23 612 633 611 633 0.91

6 8 0.0015 0.16 13.9 1.1 2 23 639 660 638 660 0.96

7 8 0.34 39 6.4 0.2 3 23 699 720 697 720 0.88

8 8 0.018 2 10.5 2.7 2 23 727 749 726 749 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	0.41	47	6.2	2.2	1	23	498	521	498	521	0.92
2	8	1.2	1.4e+02	4.7	2.0	1	23	526	549	526	549	0.91
3	8	0.00029	0.033	16.1	0.3	1	23	556	578	556	578	0.98
4	8	5.3e-05	0.006	18.4	3.7	1	23	583	605	583	605	0.98
5	8	0.001	0.11	14.4	0.3	2	23	612	633	611	633	0.91
6	8	0.0015	0.16	13.9	1.1	2	23	639	660	638	660	0.96
7	8	0.34	39	6.4	0.2	3	23	699	720	697	720	0.88
8	8	0.018	2	10.5	2.7	2	23	727	749	726	749	0.96

Sequence Information

Coding Sequence: ATGCGTCGCTGTTGTTTGTgcagaaaaaagaagaaaggaAATGAAAGTTTCTTTAGTGTTCCAAAAGACGAACGCAGAAAAAACATGTGGAGTAAAATTTGCCAAGTTGAATTAACATCCAGTTCTTTCCTTTGTATGGATCACTTTGCTCCGGCTGATATAGTAACAGGTCGAAGAAATTCTCTGATGCCCAGCGCAGTACCTTCCGTTAATATACCTTCCGTTAATGTTATATCCAAAATGGAAGTCTCAAACAGCTCGATATCATTGGCAATgCCATCGGTTAAACAGAGCCTTGTTAACCAACCCTCTGGTGTTGTCCCGAAGGAATTACTTAATGGCAGTGAGTCTAATGTCTACCGGCAGCTTTCTAATGATCAAAATGAAGGTTTGATAAAATTCAGTGCTGTACCTTCCGTTGTAATACCTAAAATGCAAGTTCCAAACACTTGGCTATCATTTTCAATGAAACCTGAAAACTCGCAACGTATAAATTTTGAACATCAAAAAGGGGAGTTTACACAAAATTTAgtaaattcgcataaaattgTAGAGCATCCACAACTGCAAGAAGAACTTATAATAGAAATACCTGTAATGCCTCCACAACTACAAAAAGAATCTATACTAGAAGCACCGGATTCCAAATCGCTTTTTATTGCCGGCTCTACACAAACCAATACTCGCCTTTGTGGCTTAGTAGAAACTTTAGACTTATCAGACGAATTCCATTTAAATTGTTTCTATTGTTCTGAAGTATTTCCATtggaaaaatggaaaattttcgcAAACCATTTGAAGAAGAAACATTTTGAAATGGAAGATGAACTCAAAACTTGCGAatatgtttctgaaaatcacaaaTCCACTTTTACAGATTCAACTGTATCCACACAGACAGAGGCCATTATTCAAACTGTTGTTATTAATTCAAAAACAGACCTGTCTTCCTTAGTAGACCCACTAGAATCTACAAATCTCAGTTGCAGCCTTAAAACGTTGACTACAGCAGAAGAGACGCTTGAACCGAAGGAAGAATGTGAACCAGATTCTATTGAAATTGTTCAACAAAAAGCCACAGAGATTGCTTTCGAATATACACCACGTGAAATAGTAGAATTACTGCTGGATAGTATGAAGAATTATCCAGTTTTGTGGCAATTCGATGACAATCCATATAATGATGACTTTTATGAAGCTGTCGAAGatttgtgtaaaataattaatgataAATGGTCTCTGaatattgataatttaaaaatgcGACGCAGCATAAATCGTATACTAAGGTTTTACTGCTATTTATACCCGAatgataacattgaaaatattgaCCAATTTACTTGTTACTACGACAAATGTGCTACTTTTTTGCCTGCTTCTGTGAACGAAATTGCTTATGCACGTTGTTCTCACTGTTATATGTGCTACAAATGTGATTTCTATTTGAAACCTCACCTTTTAGAAGAACACAAGATTTTGCAATGGCCTTACAAGTGTGTACAGTGCAAGGAATGTTTTATTGAAAGCGATGAATATGAGTTTCACAAACGTCTGCCACACTATGATGAAAGCTTTAGATGTGAACCGTGTAATAAAACATTTCTTCGTCGTAATAAATACAATCAACATGTCTTAGACAAACATCATCCCAAAGAAGCGAAATACAAATGTGGTGTATGTGAAAAAGTACTTACAAGTCGCGTTTCTTTAACGAATCATAAACTCATCCACGgagaaaaaaagcacaaatgCCACCTGTGTCCGAAATCGTTTATTAATATATCATCATTAAGACTTCATTTAAAGTTGCATCGAAGACAATATGATGTAATGTGTGAAATTTGTGGACAGAAAATGTTTGATAAAGCATCACTAAGGGTGCATATGAAAAGGCACACTCAAGAAAAAATCACTTgtaatatatgtaatttaaaattaagaaaatcgaGTCTAAACCGGCACTTACGATCACTACATGTGGCATATGAGGGTACTATTGAACAAACATTAAAAGGGAGACATGTGAATAATACGAGATCGGCTAGGCCATTACCAATTGGACGTAGAAGGAAATATATTGAGGATTCTATATGTAAAACATGTGggatgaattttgaaaattatgatttagtTGTAGAACACAACAAAGAGTTCCATCCCGATATTCCGATATGGTCGTGTAAAATGTGTGTCttggattttaattttaaaaataatatgaaacgtCATTATCGCAAAAGACATAAATTAGACCCGATTCAAGTATACAAATTGGTAGAGGAAAATGAGGACTTAGATGTAGTGTTAGCTTATGATAAGGAGCAATTGAATGAGCTGGCCGAAACACATactacttttaaaattaaacggGACAACGTCggaaaatttatgaaaagaCCAATTAAATCGAAGTTTTTGACAGATGAGATTTATTTTGAAGAAACAAATAACAGTTCTGAAATACAAGATGAAATAATTAATGCTACTGATAATATCGAAGCAGGGGAAGGTTTTTTAATAGAACTCTTACAGGAAGAgtcttaa
Protein Sequence: MRRCCLCRKKKKGNESFFSVPKDERRKNMWSKICQVELTSSSFLCMDHFAPADIVTGRRNSLMPSAVPSVNIPSVNVISKMEVSNSSISLAMPSVKQSLVNQPSGVVPKELLNGSESNVYRQLSNDQNEGLIKFSAVPSVVIPKMQVPNTWLSFSMKPENSQRINFEHQKGEFTQNLVNSHKIVEHPQLQEELIIEIPVMPPQLQKESILEAPDSKSLFIAGSTQTNTRLCGLVETLDLSDEFHLNCFYCSEVFPLEKWKIFANHLKKKHFEMEDELKTCEYVSENHKSTFTDSTVSTQTEAIIQTVVINSKTDLSSLVDPLESTNLSCSLKTLTTAEETLEPKEECEPDSIEIVQQKATEIAFEYTPREIVELLLDSMKNYPVLWQFDDNPYNDDFYEAVEDLCKIINDKWSLNIDNLKMRRSINRILRFYCYLYPNDNIENIDQFTCYYDKCATFLPASVNEIAYARCSHCYMCYKCDFYLKPHLLEEHKILQWPYKCVQCKECFIESDEYEFHKRLPHYDESFRCEPCNKTFLRRNKYNQHVLDKHHPKEAKYKCGVCEKVLTSRVSLTNHKLIHGEKKHKCHLCPKSFINISSLRLHLKLHRRQYDVMCEICGQKMFDKASLRVHMKRHTQEKITCNICNLKLRKSSLNRHLRSLHVAYEGTIEQTLKGRHVNNTRSARPLPIGRRRKYIEDSICKTCGMNFENYDLVVEHNKEFHPDIPIWSCKMCVLDFNFKNNMKRHYRKRHKLDPIQVYKLVEENEDLDVVLAYDKEQLNELAETHTTFKIKRDNVGKFMKRPIKSKFLTDEIYFEETNNSSEIQDEIINATDNIEAGEGFLIELLQEES

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01138069;
90% Identity: iTF_01138069;
80% Identity: iTF_01138069;