Basic Information

Insect: Panzeria rudis
Gene Symbol: ush
Assembly: GCA_956483635.1
Location: OY101449.1:146210801-146222526[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.11 12 8.0 0.0 6 20 267 281 263 283 0.95

2 9 0.00056 0.063 15.2 0.8 1 23 338 360 338 360 0.98

3 9 0.094 11 8.2 1.0 2 21 389 408 389 409 0.92

4 9 0.097 11 8.2 2.9 2 21 816 835 815 836 0.93

5 9 0.021 2.4 10.2 0.0 3 21 877 895 875 896 0.92

6 9 0.23 26 7.0 0.1 1 23 992 1014 992 1014 0.97

7 9 0.026 2.9 10.0 1.4 1 23 1020 1042 1020 1042 0.99

8 9 0.00063 0.072 15.0 0.6 1 23 1111 1134 1111 1134 0.96

9 9 0.84 96 5.2 0.7 2 20 1262 1280 1261 1282 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.11	12	8.0	0.0	6	20	267	281	263	283	0.95
2	9	0.00056	0.063	15.2	0.8	1	23	338	360	338	360	0.98
3	9	0.094	11	8.2	1.0	2	21	389	408	389	409	0.92
4	9	0.097	11	8.2	2.9	2	21	816	835	815	836	0.93
5	9	0.021	2.4	10.2	0.0	3	21	877	895	875	896	0.92
6	9	0.23	26	7.0	0.1	1	23	992	1014	992	1014	0.97
7	9	0.026	2.9	10.0	1.4	1	23	1020	1042	1020	1042	0.99
8	9	0.00063	0.072	15.0	0.6	1	23	1111	1134	1111	1134	0.96
9	9	0.84	96	5.2	0.7	2	20	1262	1280	1261	1282	0.91

Sequence Information

Coding Sequence: atggatgatgatgatgatgatgatgatgattCCAAAGATTTTAATCCTAATAAGACAACAAGCATAATGGACGATCACACCGAAGAAGAAGATAGAAGAACTCCACAAAATAATCATCATCATTCCCATATGCAACATCAAGAGCAAACAAAAGAGACTGATTTTGAAAGGGCGGAAAGTCGAAACGAAGACGATATTGAAATGCCTGTTAATGAAGAGCAAGATGTTGATATACAGCCACCTTTACAAAAAAGACCAAAAATGGCCttggaagaagaaaataaaagaaatagcaGTAGTCCTTCTGTGCAATCACCTCTTGCAAGAACTACAGAAAATTCAAATGACTCTGTAAAATGTGATAATATGCAAAATCAAAGAGATGAATCTAATTCAAGAGATCATAGATCTAGCAGTCCTTATTCGAGGACCATTACACCAGCTATAAGTCCTTCGAAAGAAGATGAACAAGAAGAAGTTGTAAATGAAAGCCTTTGTTCTCCCACTTCAGGTGCAATACCTAAATTAAGGCTTAATGCTTTATTGGCTTCAGATCCTGCCCTAATGCCAGATGCCAAAGATTTAAAGGTTGTACATGAAGAATCACAAACTCAACAAAGAATAGCACGTTTGGAACAGCATCTGCAACAACAATTGCAAACAGAAGAATCAGGGGCGCTAGAAACAGAACACATACCTGCAAATGCTAGTGCTGCACTAGTGGAACCAGTTAAAAAGCAGTTAGCAGCCTCAGTGGAAGCACCACCACAACGTATGAAAGTGTTCATGTGTATACCCTGTGGCATAGGTTTTAGTTCACCCTCTACTTTAGAAGCTCATCAAGCGTATTATTGTTCTCATCGCCACAAAGAGACAGACGATGATAGTTCATTGTCTGCAGCCATAGCTGAGAAAAGCTCAGCCTCTCCTACACAGGCAAATAACCCAACGGCAAATATATCTCTAACGACAACAGAAACAGCAACAAAAGTTGTCAAGACTGGCAAACAATATGCCTGTACACAGTGTTCCTATAGTGCTGATAAGAAGGTTTCGCTTAATCGCCATATGCGTATGCATCAGACATCGCCAACACCCAGCTCCAATGCTTCCAATAACGGCAGTGCCATAATGGAAGATAATTCTAGTCAACAAGTGGATCGTTATTGTAGCGATTGCGATATACGTTTTAATAATGTTAAAACCTACAGAGCCCATAAGCAACATTATTGCAGTTCCAGAAGAACAGACGGacaATTAACACCAAAATTGGAAGTTTCAACCGCGACGACTACACCGAAAGTTCCCGCTGTGGTCAGTGGCGCTATAAGTCCACAGACACGTACTAAAACCCCCACACCTGCAATGGTAGCAGCGGCAGCCGCTGCAGCAGCAGCTGCCTTACAACAGCCTCCAGCTACTCCTTTCCTGGCTTTGCCAACAAATCCCATATTAATAATACCATATTCTTTGATACGTTCTGCCAGTCTTATAGCTGGACCTTTATCATCTCCTTCGCCGGCTGTGATAAATCCTGATACAACCTGTTTCACTCTGGATAACGGTAATTTAAAGCCTTTAGCAACGGCTTTGAACATTAGTGCTTTGAATGCAGCAAATAGTTTAGTTGCAGCGGCAGCACCAGCAACAGGTCAACAATTAAGCATAGTAGATTCTACGCGCCAAACAAACGCAAATGAAACGCTGCTCACAGAAAAGAATATCAAACGAAATGTGGATGAGTCATCAGAGCACAGCGCAAAGAGAAAAGGTGAAGGTTTAAGAGAATCTGCACCCTTGGACTTGTCACTGCGTCGTTCTCCTATTGCTGCTTTATTGCAAAGACAACGTTTCAATTCTGCCTCATCATTTTTAGATACTGAACAACAGCGCTTAGATATGGAAACTTTATTAGAAGCCGGCAAAGAAAATTTAGCTTTGGATGAAACAGGCAGTATAACACCAGAACAAATTGTATGTGCTCCCTCTTTGCCGAATAGTCCTTCGATGAGTCCCTCACCCAGAAGACGAACCATAAGCCCTAGAAGTTCTGGTGCTGGCAGTACTTCTTCTATGTCTCCACCAGCCACAATGCCACCAAATGCTTTAAGTGCTGCCACAAATCCCACAAATTTACTAGACAACTTACAATTACGCTCAATGCTGCCGGCAGAATTATTAAATCCTCTGTTGGctaaacaaaatatggaattgGCTTTAAAATTATCTGCTGCTGCAGCGGCGGCAGTCAGTCAGTCATCAACGAGCGGTGGTGTGGGAGCTGCCGGTTCTACGCCTGCTGATTTAGCAGCAGCAGTTGCGGCAGCTACTAGTAGAGGATCTCTGTTGGGTTTGCCCGTTCTACCACCAACTGCTGCAAACACAGTGCAGGTGCCAACCGCCAGCGCAAATCAGCCGCAAATTTATGTTAAACAAGGTGTTTCAAAATGCAAAGAATGCAATATTGTTTTCTGTAAATATGAAAACTATTTGGCTCACAAGCAACACTATTGTTCGGCCAGAAATCAAGAACCGCCTGAAGGTGAAGCCAAAGTTTCGCCAACACCACCCTTGGCCAGTGGACCATCTCCTGTCGACACAACACCTGTAGCTTATCAGCAATTAATTTGTGCTGCATGTGGCATTAAATACACCTCATTGGATAATTTAAGAGCTCATCAAAACTTTTATTGTCCAAAAGGTGGTGGTGTGGTAGCCGccgcagcagcagcagcagcagctgtTGCCGCTAATTCTGAGGCCACTCATACAGTTTCCAAAAAAGATAAATGTCctaaatgtaaaattatacatgaGCTTACACTACCTTGTCCACCTCCACCGGCAATGCAACAAACACAACCACCACCACCATCGCCACAAGCCATAGCCATAGCCAACTCGCAACTACAACAACAGTCATCAGTAACCAGCACCTCTTCCTCCTCCAGTTCCAATAATAatcaaaatgtttataaatgtcctttatGTGATGCTGTCAGCTTAACAGCCAGTGAAAGTCGAAAACATATGGAAACTCATGGGACTGTTAAAGCCTTCAGATGCACCATTTGTCGTTATAAAGGCAACACTTTGAGGGGCATGCGTACACACATACGCATGCATTTCGATAAGAAGACGTCAGATATAAACGAAGAACATTACATGGCCTGTATATTAGAGgatgaaaatattgaaataccaAGTGCTGCTTCTTTGAATCAAGAACATTTGGTGCAACAGTTGGCCGCTGctcaacagcagcagcaacaacaaaagcagtTAcaacagcagcaacaacaacaacatcagcattCTCAGCAGCAGGTGTTCAATTGTGATATTTGTAATTATTCATCAACCTATAAAGGCAATGTGTTACGTCATATGAAATTGGTTCATCCTCATGTTGTTCCCACTTCGCCCTCTATCTCTCCAGAGGCTGGAGATTTAGATACAATAGAAACAGCCTCTTTAAGCAGCACTCATAATGGAGAAAATGGCATGAATAATTTCACAATCAAGTCTGAACCCATGGATCCTAACGTTACAAATACAAGTCCTGCGATCCTGTTAAATATCCATGACAATAACAACTCACCCGTACCGAATATGGTGCACAATGCCACAAATGATTTGATGCATCATATTAAATCCGAACCAATGGAAATTTTAGTTGAACCTTCAGCACTGCATATACCACCGCCACCTTCTCTTAGGTCACCAGCTATAGGGCCACCACCTTTACTAAATGCTACACCAGAAGAGAATATAAATCAGAAATATTGTCAAACATGTGACATTTCATTCAATTACATGAAAACCTATTTGGCCCACAAACAATTCTACTGCAAGAATAAACTACACCGACCAGATACTAATGATAGTCCAAGTCCCAACGCTGGCCATATAGTAACAGGAGTACCATCGCCCAACACTTTAATGATGCaaaagaataaagaaaatttacaagaaGCCGCTATTTGA
Protein Sequence: MDDDDDDDDDSKDFNPNKTTSIMDDHTEEEDRRTPQNNHHHSHMQHQEQTKETDFERAESRNEDDIEMPVNEEQDVDIQPPLQKRPKMALEEENKRNSSSPSVQSPLARTTENSNDSVKCDNMQNQRDESNSRDHRSSSPYSRTITPAISPSKEDEQEEVVNESLCSPTSGAIPKLRLNALLASDPALMPDAKDLKVVHEESQTQQRIARLEQHLQQQLQTEESGALETEHIPANASAALVEPVKKQLAASVEAPPQRMKVFMCIPCGIGFSSPSTLEAHQAYYCSHRHKETDDDSSLSAAIAEKSSASPTQANNPTANISLTTTETATKVVKTGKQYACTQCSYSADKKVSLNRHMRMHQTSPTPSSNASNNGSAIMEDNSSQQVDRYCSDCDIRFNNVKTYRAHKQHYCSSRRTDGQLTPKLEVSTATTTPKVPAVVSGAISPQTRTKTPTPAMVAAAAAAAAAALQQPPATPFLALPTNPILIIPYSLIRSASLIAGPLSSPSPAVINPDTTCFTLDNGNLKPLATALNISALNAANSLVAAAAPATGQQLSIVDSTRQTNANETLLTEKNIKRNVDESSEHSAKRKGEGLRESAPLDLSLRRSPIAALLQRQRFNSASSFLDTEQQRLDMETLLEAGKENLALDETGSITPEQIVCAPSLPNSPSMSPSPRRRTISPRSSGAGSTSSMSPPATMPPNALSAATNPTNLLDNLQLRSMLPAELLNPLLAKQNMELALKLSAAAAAAVSQSSTSGGVGAAGSTPADLAAAVAAATSRGSLLGLPVLPPTAANTVQVPTASANQPQIYVKQGVSKCKECNIVFCKYENYLAHKQHYCSARNQEPPEGEAKVSPTPPLASGPSPVDTTPVAYQQLICAACGIKYTSLDNLRAHQNFYCPKGGGVVAAAAAAAAAVAANSEATHTVSKKDKCPKCKIIHELTLPCPPPPAMQQTQPPPPSPQAIAIANSQLQQQSSVTSTSSSSSSNNNQNVYKCPLCDAVSLTASESRKHMETHGTVKAFRCTICRYKGNTLRGMRTHIRMHFDKKTSDINEEHYMACILEDENIEIPSAASLNQEHLVQQLAAAQQQQQQQKQLQQQQQQQHQHSQQQVFNCDICNYSSTYKGNVLRHMKLVHPHVVPTSPSISPEAGDLDTIETASLSSTHNGENGMNNFTIKSEPMDPNVTNTSPAILLNIHDNNNSPVPNMVHNATNDLMHHIKSEPMEILVEPSALHIPPPPSLRSPAIGPPPLLNATPEENINQKYCQTCDISFNYMKTYLAHKQFYCKNKLHRPDTNDSPSPNAGHIVTGVPSPNTLMMQKNKENLQEAAI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00260189;
90% Identity: -
80% Identity: -