Prud002840.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101447.1:22893936-22900765[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00041 0.046 15.7 0.2 1 23 133 156 133 156 0.97 2 13 0.013 1.4 10.9 3.6 2 23 205 227 201 227 0.88 3 13 0.0023 0.26 13.3 0.6 1 23 356 379 356 379 0.93 4 13 1.7 2e+02 4.2 1.0 2 23 429 451 428 452 0.93 5 13 0.14 16 7.7 0.1 1 23 532 555 532 555 0.89 6 13 0.0013 0.15 14.0 2.4 2 23 606 628 606 628 0.97 7 13 1.2e-05 0.0014 20.4 1.6 1 23 738 761 738 761 0.97 8 13 9.6e-05 0.011 17.6 0.1 1 23 810 833 810 833 0.95 9 13 8 9.1e+02 2.1 1.2 1 23 851 875 851 875 0.73 10 13 0.0016 0.18 13.8 1.1 2 23 883 905 882 905 0.95 11 13 0.032 3.7 9.7 2.8 1 22 981 1002 981 1004 0.91 12 13 0.22 25 7.0 0.6 1 20 1056 1075 1056 1077 0.94 13 13 0.044 5 9.3 0.0 2 23 1159 1181 1158 1181 0.95
Sequence Information
- Coding Sequence
- atgGACAATCTAGATCCCTGGACTATGTTTACTAATGATTTAATGTCAGATGAAAGAATTGTGAATGAATTTGGGAGAGGTGGAGCGGGTGGTACAGATGTCCCCTTTTCTATACCTTCACCGATACAAGATATGCAGGTTAAAGAGGAGCCTCAAGAAGTTGCAGATGAAATATTCGATGATGATAATGACAATGTACCACTTCATTTTCTCGCAGAAGGccacagtaaaaaaaataataaccacAACCAAACTCGAAATCCCGAAGATGATAACGTTCTTTTTGATTTCGGCTTAGAGTCATCAAATTCGCAAAATCGTACTTTTGATTTCCCCAATTTGGAGCCAGAAGATAAATACTACAATGCAATGATCAAATTCGAAGATgctataatatatatatgtcCTGCATGTGGTCATGAATTTAGCTCTCAGGATGCCTGGAAAAATCATCTGAACGTAAATCATCTTTATAATACACGTCGTGGcctaaattttatacaaatcgATAAATTATACCATGAATGTATGGAGTGTCACAAACGCATCGCTATGCACAGCATGGAAAATTTACTCAAGCATAAATTCACCCATCTACCTTATCGATGTAGCAAGTGTATGGTGTGTAAAAGGCAATACAAATACAGACAGGATCTTATGGTACATTTGCGTATGAACCATCGTGACGATttgatagaaattttaaaaaaagaacataaagaTTCTAAAAGTAACAATTCGCAGCCGCAAACTATTCGTTCAATTTTGAGTAGGACAGAAGGTAACAACAATAGACCTAATATTTCTATTGGATCCGTTAAGGAAAATGCGAaagatttatttgataatattgAAGTAAAAAATGAATTACTTAATGAAGATGAAGACGATACAATGGGTGAAGATAGTCAGCCGCCACCAGCCAAAAAGCCAGCTAGAGATTTGCCTACTTTTCTTGAAGATGGGTCTACAAATGGTTCAGCTAACGACCAACCAATGACAAGTCGATCTAATAAAGCCGCAGCAGTAGATGAATTGGATCTTTCGCTTGAAGAATATATATTGTTCACATGCCCGCAATGTGGTACTGAGTGTGAGACACAAGCTCAATGGCGTCAACATATCGAATTTGTTCATGAATTTGGCACGCGAAGGGGTTTGAATTTTCGAGAGCTACTTAATCAAAAAGCTCAATGCATGGGTTGCAATTTGATCTTATCAACCACTTCCATACATAGTCTGCAAGTTCATAAATTCAGTCATTTGCCATACAAAAAATGGATGAGTTGTAAACTTTGTTTCAATTCCTTCAACACAAATTTGGATATTATTCAACATTTGGCTATTACGCATCATTTAGTTGCGGAAAATATCAAACCAGCAGCAGGTGCAGAGGTAAATAACGACGAGGACAGTCAAGAAGCATTTGGCTTTGATGGCGTTGGCGAATCTTTCGGCGGTTTAGGGGATGATAATGATTACGGCGGTGGTAGTGGCAGTTACGGAGCTTCCGATAGAAAAAATACGGCATCAGGTCAAGATTCTCAATCAGGAAAATATGATGAACGTGATGTATTCGAACAGCATATAACATACATTTGTCCAGCGTGCGGTAAGGAATATAATGATAAGAAAATCTGGCGAAAGCATATTGTAGAAATTCATAAATTAGGTGAATTGGAAAATTTgaatttcgaaaatttaaatgacCGTCAATTGAAATGTAGAGAATGTGATAAGATTATAACAAATGCGTATGGCATACAAAATGCCCAACAACATCGTATGACCCACTTGCAGTATAAATCCTTTGCCAAGTGCCGTTTATGTCGTAAAACTTATACTGATCGTAAGGGTTTAATCAAACACTTGAGAAATTCCCATAAGCTAGGTGTTCGAGTAGGTGGTTTTGGTCAAATTAATCCAGTACCGTCATCGACCACAAGTTATGCTGGTTCAGGTAGTAGTTCCACTTTTAaaccatttataaaaaaaccctATAAGATTGCTCACTATCCACCTAAAGAAATTGTTAGATTATCAAATTATACTTATGAAATTGTACATTTAATCGAAGACGACGACGATGACGATGATGTAACTATTACGGGTGGTTATGATTTTGCCAAAGGCGATGCTCATTTGTATCGAAACAATTCGCCTTATAGTACACCCACTAAAAAAGTTGCCAGTATGGAACAAATAACCAGACATAAATGTGTAGACTGTGGTACCATATTTCCGACGCCACAATCACTACAACATCACATTCGAAAAGAACATGATTTTGTTGATTATCGAAACTCTCCCTCTACGACAGCGGTGCAAAATGAGGAAAAATCCAATGATACTAATGATTTGTTAGTGCCCAGTAGGGATGTTGATGTCCAACCCGAGAACAATACGACCATGGAGGgcaatttcatttatttgtgcCCCCAGTGTGGTGTAGAATTTCGTTCACAAGTTCAATGGCGCCGTCACATTAATATTGAACATAATTTTGATAAACGCAGCTCTTTAGGCTTTAGGCCTTTGGATAAATTTCGTTATCAGTGTAAAATTTGTAAAGACACAGTAACAAGTTCAAAACTTAAGGGACTGCAGGATCATAAATTTAGACATTGTCCGTATAAACTCTATTTAAAGTGTCTGCTGTGTGGCCAATCGTACAATCATAAACCCAATATGATAGCCCATTTAAGACAAAGACACAATATTGTAGAAATTACGGATGGAGGAGTAGGATCATCTTCCCTGGACCGTACGCAGTCAAGACAATCATCGAATTCGAAcagtaaaaaagattttaatgaTGCCCCAACCAGACTCATACGTTATCCTGATCCTACTTACAACAATACAAATCGGCCAGCAGGCTTAAAGACAGTCGAAGATGTCATATCCTTTCACAATGCCGTCGATCATGAATCAATTAAGTACCGCTGCCCATCGTGTAATAAACATTTCGATTCTCATGTGTTTTGGCGCAAACACATTGTGGACGAACACAACCTGAATAGTAGAGAAGGTTTGAATTTTCGTCAATTGGATGAACACCATTATATTTGCTTGCAATGTTATAAGCGTGTTACGGTCACCCACACAAAAGGCGCAATCGGTCAACTGCAATCGCATAAATTTAGACATTTGCCTTATAAATCATTCCGTTGTACTGCCTGCGATGGAGAATTTGTACGCaaacaaatgtttttcaagCACCTGGATAGAAATACCAACAAATGCTCTGGCATAAATCCTGATAATAGTTTTATCGATACTGGTGATAATAGCATCACAGCTCcaaataataatgatgatggtGGCACTGATGATTTAAGTTCTACAATGACTGAGAAAGCTGGTTCTTCTTCAACAAAATTCTCTTGGCCAACGCGATCCTCACTACCTGCCCAGTCGGCTAGTGCTTCTAATAATGAATCAATTTCAGATAATCAAGGTTGTTTCACTCTAAACTGCCCCCAGTGTGGTGCAGATTTCGAAACGACACGTGGTTGGCGGGAACACATTAATATTGAACATAATCTCAACAATAGAActgttttgaatttcaaaaaaattagtgCTAAACTACACCTCTGTTTGGAATGCAATGAACACGTCAACGGTAGAAAACTGCGTGATCTGCAAGTACATAAGTTTAAGCACTTACCATATGGCGCTTATTTGCACTGCCGGTTTTGTTCTATGAAATATTTCCACATCAGCAATATGCAGgagcatttgaaaaataaacatccGAATATGgtgcaaaaaatgaaaaactatgATGACAATTATAGTGTTGCTTTGGACGAAGATGATGATGCCAACGTTGATGGCAGCAATGATGCCGATGCGCCATTGGATGGTGAAGGAGATGATAGTAATAATGGCATGGAAGATGGAATCGATATGGATTTGTTAGAGGCCGAAGCTGAAATTGAAGAAGTCGATCCTGATAATGTTGAATCTGAGGAACAATATCTCTTAGGCTAA
- Protein Sequence
- MDNLDPWTMFTNDLMSDERIVNEFGRGGAGGTDVPFSIPSPIQDMQVKEEPQEVADEIFDDDNDNVPLHFLAEGHSKKNNNHNQTRNPEDDNVLFDFGLESSNSQNRTFDFPNLEPEDKYYNAMIKFEDAIIYICPACGHEFSSQDAWKNHLNVNHLYNTRRGLNFIQIDKLYHECMECHKRIAMHSMENLLKHKFTHLPYRCSKCMVCKRQYKYRQDLMVHLRMNHRDDLIEILKKEHKDSKSNNSQPQTIRSILSRTEGNNNRPNISIGSVKENAKDLFDNIEVKNELLNEDEDDTMGEDSQPPPAKKPARDLPTFLEDGSTNGSANDQPMTSRSNKAAAVDELDLSLEEYILFTCPQCGTECETQAQWRQHIEFVHEFGTRRGLNFRELLNQKAQCMGCNLILSTTSIHSLQVHKFSHLPYKKWMSCKLCFNSFNTNLDIIQHLAITHHLVAENIKPAAGAEVNNDEDSQEAFGFDGVGESFGGLGDDNDYGGGSGSYGASDRKNTASGQDSQSGKYDERDVFEQHITYICPACGKEYNDKKIWRKHIVEIHKLGELENLNFENLNDRQLKCRECDKIITNAYGIQNAQQHRMTHLQYKSFAKCRLCRKTYTDRKGLIKHLRNSHKLGVRVGGFGQINPVPSSTTSYAGSGSSSTFKPFIKKPYKIAHYPPKEIVRLSNYTYEIVHLIEDDDDDDDVTITGGYDFAKGDAHLYRNNSPYSTPTKKVASMEQITRHKCVDCGTIFPTPQSLQHHIRKEHDFVDYRNSPSTTAVQNEEKSNDTNDLLVPSRDVDVQPENNTTMEGNFIYLCPQCGVEFRSQVQWRRHINIEHNFDKRSSLGFRPLDKFRYQCKICKDTVTSSKLKGLQDHKFRHCPYKLYLKCLLCGQSYNHKPNMIAHLRQRHNIVEITDGGVGSSSLDRTQSRQSSNSNSKKDFNDAPTRLIRYPDPTYNNTNRPAGLKTVEDVISFHNAVDHESIKYRCPSCNKHFDSHVFWRKHIVDEHNLNSREGLNFRQLDEHHYICLQCYKRVTVTHTKGAIGQLQSHKFRHLPYKSFRCTACDGEFVRKQMFFKHLDRNTNKCSGINPDNSFIDTGDNSITAPNNNDDGGTDDLSSTMTEKAGSSSTKFSWPTRSSLPAQSASASNNESISDNQGCFTLNCPQCGADFETTRGWREHINIEHNLNNRTVLNFKKISAKLHLCLECNEHVNGRKLRDLQVHKFKHLPYGAYLHCRFCSMKYFHISNMQEHLKNKHPNMVQKMKNYDDNYSVALDEDDDANVDGSNDADAPLDGEGDDSNNGMEDGIDMDLLEAEAEIEEVDPDNVESEEQYLLG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00742345;
- 90% Identity
- -
- 80% Identity
- -