Prud037990.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101450.1:114995397-115003025[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 6.5 7.3e+02 2.4 0.8 2 23 253 275 252 275 0.92 2 15 1.1 1.3e+02 4.8 0.5 6 23 284 301 284 301 0.97 3 15 0.0005 0.056 15.4 4.1 1 23 307 329 307 329 0.98 4 15 0.26 30 6.8 0.1 1 13 338 350 338 355 0.78 5 15 1.2 1.4e+02 4.7 0.3 1 12 368 379 368 381 0.85 6 15 4.4 5e+02 2.9 0.6 2 23 465 487 464 487 0.92 7 15 0.46 52 6.0 0.5 6 23 496 513 496 513 0.97 8 15 0.021 2.3 10.3 3.6 1 23 519 541 519 541 0.98 9 15 0.0036 0.41 12.7 2.9 1 23 550 572 550 572 0.96 10 15 8e-07 9.1e-05 24.2 1.6 1 23 580 603 580 604 0.95 11 15 0.37 42 6.3 0.5 3 21 611 627 610 629 0.70 12 15 0.013 1.5 10.9 1.7 3 23 639 660 637 660 0.95 13 15 3.6 4.1e+02 3.2 6.2 1 23 668 691 668 691 0.94 14 15 1.3e-05 0.0014 20.4 1.1 1 23 697 719 697 719 0.98 15 15 1.7e-05 0.0019 20.0 1.0 1 23 725 748 725 748 0.96
Sequence Information
- Coding Sequence
- ATGGAATGTTGTTTATTATGTTTGAATTCCGAGAACATGATGCTGGGAAACATAATAGTTGATTCAATACAATGGAGGGCAGAAAATATCAATTATATAATAGAAAAACATCTCTGGCCAGTGGACACTACAAATTCTTCGAGTACGATGTGTATTATCTGCTGGGAGAAACtggaaaaatttcacaaattttatctGCTTATCGAAAAAGCTCATGCAGCATTAGGAACGACAACAATCTCAAGGCATGTAAAAGAATTGACACAAAGCAGCGCTGATCATTTAAAAGATTCTAATGGATGTaaagaagaatacaaaaaagaaaGTAGTATTGAacctaaaattttaatgcagCAGCACTTTCCCGCAGAATATGCGATGGATAATGAAAATTGCTTGACTAAAGTGGAATATGAGGATACATTGCTAATTGACAAAATAGTCAAACCAAGACGAAAAAGAGGTCGTCCGCCTATGAATATGTTAAGTGGGTTTAAACAGAGTAACAAGGACCCGCTAAAGAAACGTAATGCGCCTAAATCGCTggcaaaacatataaaactcggaaaaaagtttaaaggagacatttcaaatgaatttaatattccacTAGATGCTAACAACTCAGGCTCTGACACGGAATATGAAGGTAATGAGGGAAAATCGCTATACGATACTTGTAAGAGAAAACGCAAAAACCCCGATAAGAAATCTCGAGAAGAACATGATAAAATGATTGCAgagcatttaaaaatttcatgttgtCTTTGTAAAGTACCTCTGGACAACTTTATAGCGTTGAGAAAACATTTTCGAGAAGAACATAATAAACGTGGTTTTACAATATGTtgcaacagaaaattttttaatcgtcCTACTCTCGTTGATCACTTAAACTTTCATTTGGATCCCAActattttaaatgcaaattcTGTGCGAAAGTTTACTCACAACGCTGCACGTTAGAAAGACATGTAAAAGTTCACATGAAAACTGAACAAGGAAGTCATCATAACTGTGTTGAATGTGGCAAGTCTTTTGTGGGGACTATACAGTTAGAAAATTATATACTTACTCATGCACCTGgctatgaaaaaaagttttcatgcaGCGAATGtgggaaaaattcaaaaagtttgAGAGTTCCACTTCTGTCACTATATAAAGCTAACGGACACACGAAATATATAATAGGAAATGATGCAATGGTTGGAGAAAATTCAAATGAATCTAATATCCCACCCTATGTTAAGTACAACTCAGGCTCCGACACTGAATATGAAGGTAATGAGGAAGAACAACCATACGaaacttataagaaaaaacgcaaaaaccccGATAAGAAAACTCGAAAAGAACATGATAAAATGATTGCAgagcatttaaaaatttcatgttgtCTTTGTCAAGTTCCTCTGGTCAATTTCATAGCGTTGAGAAAACATTTTCGAGAAGAACATAATAAACGTGGTTTTATAATatgttgcaacaaaaaattttttaatcgtcCTACTCTTGTTGATCATTTAAACTTTCATTTGGATCCGAActattttaaatgcaaattcTGTGCTAAAGTTTACTCAGAACGCTGCACGTTAGACAAACAtgtaaaaattcacatgaaaactGAACAGGGAAGGCGTCATAACTGCGTTGAATGTGGAAAGTGTTATGTGGGGACTACACAGTTAGAAAATCATAAACTTACTCATGCGCCTGACTATGAGAAAAAGTTTTCATGCAGCGAATGTGGAAAATCTTTTACAACTTTATACAATCTTAATTATCACATACAAGCAATACATCACAATAAGTACGCAAAAATTTGCGATATCTGTGGTAAAACAATTCGTAATTCATTTAAATTGCACATGGAAAAACATGACAAAAAACTAGCCACCCCCGTCCATTGCGATGTTTGTGGTCTACGTTTAATTAATAAGCGCAGCTTAAAGCAGCACAAAAATTCCCAACATCCCGTTGGAGGTAAAACAGATCATTGTTGTCATATATGTCTTAAAGCTTCAGCTAGCATACGAGCTCTTCACACACATATTCGTTTTTCCCACGAAACAGGTTACACACATAAATGCACATTGTGCGACAAAGCATTCAAAAAACCTGAAGTATTAAAGgAACATATGGCTACACATACCGGTAACCCATTATATTACTGTCCCTGGtgcccaaaaacttttaaatccaATGGTAACATGTATAGTCATCGTAAAAACATACATCCCGAAAAATGGGAAGCACTGAAACGTCAAAAATATGTAGATACAGGCTTAAAAGAAGAGGTTTCGAAAAGTGTTAACGCTgattaa
- Protein Sequence
- MECCLLCLNSENMMLGNIIVDSIQWRAENINYIIEKHLWPVDTTNSSSTMCIICWEKLEKFHKFYLLIEKAHAALGTTTISRHVKELTQSSADHLKDSNGCKEEYKKESSIEPKILMQQHFPAEYAMDNENCLTKVEYEDTLLIDKIVKPRRKRGRPPMNMLSGFKQSNKDPLKKRNAPKSLAKHIKLGKKFKGDISNEFNIPLDANNSGSDTEYEGNEGKSLYDTCKRKRKNPDKKSREEHDKMIAEHLKISCCLCKVPLDNFIALRKHFREEHNKRGFTICCNRKFFNRPTLVDHLNFHLDPNYFKCKFCAKVYSQRCTLERHVKVHMKTEQGSHHNCVECGKSFVGTIQLENYILTHAPGYEKKFSCSECGKNSKSLRVPLLSLYKANGHTKYIIGNDAMVGENSNESNIPPYVKYNSGSDTEYEGNEEEQPYETYKKKRKNPDKKTRKEHDKMIAEHLKISCCLCQVPLVNFIALRKHFREEHNKRGFIICCNKKFFNRPTLVDHLNFHLDPNYFKCKFCAKVYSERCTLDKHVKIHMKTEQGRRHNCVECGKCYVGTTQLENHKLTHAPDYEKKFSCSECGKSFTTLYNLNYHIQAIHHNKYAKICDICGKTIRNSFKLHMEKHDKKLATPVHCDVCGLRLINKRSLKQHKNSQHPVGGKTDHCCHICLKASASIRALHTHIRFSHETGYTHKCTLCDKAFKKPEVLKEHMATHTGNPLYYCPWCPKTFKSNGNMYSHRKNIHPEKWEALKRQKYVDTGLKEEVSKSVNAD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -