Prud045799.3
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101451.1:98451190-98460631[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.00039 0.044 15.7 0.3 1 23 1119 1143 1119 1143 0.91 2 8 0.0033 0.38 12.8 3.9 1 23 1722 1745 1722 1745 0.98 3 8 1e-05 0.0011 20.7 4.1 3 23 1768 1788 1767 1788 0.98 4 8 0.00011 0.013 17.4 1.2 1 23 1794 1816 1794 1816 0.98 5 8 4.9e-06 0.00056 21.7 0.7 1 23 1822 1844 1822 1844 0.99 6 8 0.66 75 5.5 2.5 1 23 1850 1872 1850 1872 0.96 7 8 0.0056 0.63 12.1 0.1 3 23 1880 1900 1879 1900 0.96 8 8 0.0041 0.47 12.5 3.6 1 23 1906 1928 1906 1929 0.96
Sequence Information
- Coding Sequence
- ATGCTAAAAGTAAAAAGTGCAATAAATCAAGCTAATTATAGCAGCTTATCTTTTTTGGGAGATCAGCAGCAGCAGCCGGTTCATTTACCCGATCATTTGAAATGTGGTGAGGTTTTCACTTGGCTGTGTGCTGACGAATTATATGGCGTTGAATGTAAACTGTGTGAAGATCATCCTTTGTGCCCTCTATCAGAATTTCCCCAACATATGGACATTTGGCATACAGAATGGGCGGAGGAGACTGAAGATAATGAGGGGAATAATATGGAAGTACACTTTACAGATGATGATGAAGAAGATGGCATTTATAAGAATGATCGTGCTTTAGTATTCACCAGCAAAGATTGTGGTTCATTTAAACCGGACCATGAGTTACATAGCGACAAATTAATAAGCCAACAAGATCAGCATGAAGAAATTTTAGAACCTTTTGAACAGGTACTAATAGAACAAGACATTAGCATAAACACAATACAGATTAACGAAGATACTAATGATGAAGAATATTTCAAAGATGCCAACGTCCAGGTAGCAGAGGCCAATCAATGtcaaattgaaaacaaacagaaacaaaaacaaaagaaatcttTCAATAGAAATGCAACATTAAAACACATAATAAATAAGCAGAAAGCCGCCTCTAACGAAATAACAGAAAGTGAGAGAGATTTGCCtgaaatCTTAAGAGACATGAATCTTTTGAAGGAGAGTGATCAAACTGAAAGTGAAacaattgaaaatgaaataaacaaaagagattatcaaaatataacaaaatactCAAGCAATAAAACTAATACTTTAAGAAACAATTGGAGATTGGGAAAAACATTCGAAACTGAAAAGGAAACAAGTGAAAGGGAACAAGAAACAAGTGAAAGGGAGAAAGAAACAAGTGAAAAGGGCAGAGAAGCAAGTGAAAAGGAAAAAGaagcaaatgaaattgagaaagaaacaaataaaaggaaaatagAAACAAGggaaaggaacaaaaaaacaaaagaagcgCAGAACGATTTAACTGAAAGCggcaaacaaaaaacaagtgAAAGGGACAAAGAAACAAAAACTGAAGCAAATGAAAGTGAACTGTGCATACAAGAAAAAGGAAACGGTGAAATTGAAACAAGCAATAacgaatatttaaaatatcaggattttttaaaagaaactttagaaatacaaaaaaaacatgaacatttcttaaaaaatactaaaaaatcaagcaaaaaagtaaaagaaaaagaaaccaTAACAAAGCTCTTTGCTGATGCTAAAGAAACAAGTGAAAATGAAACACAAAATATTGACTTCTATGAGTGTTTACGAAAATCTAAAGAAATAAGAAGAAAAGCTGAAAAGTACATGAAAAGaagtaatagaaaaaatgctaaagaaaataaaaaagcagtAACAAAGGAAAGTGGAAAATTACTAAACGAAAGTAGAACCAAAGTCTCTGTAGATGTTCAACAAACAAGTGCAACTGAAACAACTACTGAGACAGTCTGGGAATGTATACAGAAATCTAGAGAATTAAGAAATCAAGCCGAGTATTTGTTAAGAGAAttcgaaagaaaattaaatgaaaatgaaaaacgcaaaaaagcTAACAAGAAACAATATGAAAGTGAAACTGAAAAAATGGcacatgtaaaaaattatttaaaaaacgatAAATTATCAATAGTAAAAGAGCCTTTAGATAATGATGCAGCAAAtttacgaaaaactagaaaatctttaagaatttcaagaaaaaatttggAGTATTCCGAAAATAGCAAACAAGTAAACGAAACGGATTTAGAGCTTAGAGGAacgaatgaaaatgaaaaacctcACTCTCATAATGAAGAAGAAGAAGTAACAAACAGTTTTAAAGATGAAAGCGAGGAGaaagaaaaggaaaataaaagagaatTCAACGAAAGTGAATTAGATGATCTTCAAAACCAGAGAAATTATCAAACATTATCTAACGGACTAAAAAGGAAACATTTACCggatttaaataaaaggaaTGAATTTAAGAGAAAACTGCGCAATTATACAAGTGAAAGAGAAGATTTAGCTCAGCAATCTGCCAAGCGTTTAAGAACGGAGCCAAGTTGGAAAAGGCGTACAATCCAAAAGGctttgaaaagaaataaattctcTTCAGAGACTCGATTTTCTAACACTAAGAGAAGTAGAAGGAAGAGTATCGGTGAGGTAaaggaagaaaataatataaCTGACAATTTCTTCGCAAATTCCAGCAACAATGAATTTTGCGCTAATTCAGACTTTCAAGAGTGTGAAATATCTCTTCCAATTGCCAAGAGCAGTGGAGTAAAGCGTTTAGACGAAGAAGAGCAGAAAGGAGATCCTCTAACAGATTCTAACGTGCAAGCGAAAGAAAAAGTTAATGAAGCTGTTAGCCAAACAGAACAAATATCTCTTTGCAGCTTAAACTTAAGCCAAAAGGAAGAGAGTGGAGTAAATACCAAGCAAACTTTGGTTACTCAATTTTTCGCTAATATTAAGGACCAGCAACAGGGCACTTCAAAGAGTTTAAACAGTTCTGAGAAACTTGAACATATTGCCTCTTCGGAACAGCTTAGCTTGCAGGTGGCTTGCTCTAACCAAGATAGCTGTACAACGCCAACTACGGAATCTTCTTCCCCTTTTTCACCCAAAACCGAAGAAGAACATTTTGAATTCTATGAACCCAAAGAAAAGCTAAACAAACAACATATTAGCCATTTAATAAAACTCTACCGAGAACATCCCCGTTTGTGGGATCAATCACATACGGAATTCTGTGAACCTCAAGTCTGTCGTAAATCCTGGCAGCGTATCACTGATGAATGGAATGAGTTCTGTAAACGTAAATTTACCATAGCTGAGATACGAATACGTATTTGTACGCTGTGTCAAAGATTTATGCAAGAAAGAGATCGTTTAGCTTTGGAGGGAGAAGTTGATGAGTGTGCCAAATTCCCATACTACGAACAAATGCAATTTCTGGAACAACAAAAATCTTTACAAAAGAGACGTGAACTGTATGATCAGCAAAACGAGAAAATATTGGAAATTTACCAACATTTTCCCATACTTTGGCACATCAGCGGTTATAAGTTGAAAAAGGCCAAAGAAAGAGCCCAAGCTATTGAGAGCATAagcaaaactttgaaattattTGACTTACATCTCTCCCCTATGGCAGTTCGAAAGAGATTACGTTCTCTTAGGAAATGTTATCGTCTGGAGAAAATACGCCACTTGCATGCTCAAGTCGAGCAAACACCCTTTGAATTTATGTTTCGGCATTATGAGAGGATGAATTTCTTGGACAAACATATAGATCCATTCGTTTGTCGTATTTGtggtaaaatttttgaaaatttacaaaattttcgaCTACATTTAGAGACTGAAAGTCATGGTAGTGTATTGGCAGAAGAAAGTGAAGCAGAACAGGATTTAGATAACAGTGCCGTGGAGGATAGTGTTAGTGCAACAAACAACGTGGACTTCAATATCACTGACGAATCCTGTCTAGCCAATATACAAGAGAATGAACTTAAAGAAACTGAGACGGAAACTTTTACTTTTTCTGCCATTTCTCCCCATCCTATGAGGGAATGTTTCTCAGAGCCCGAAAATTCTAGAGATATTTTACAAAGATTTACTCCTTTTCCCTCTTCTACCCCACCAATACCAATCATAGATTCGCAACTGCTACAAAACTCCGAAAATCCATCTTCTAATATAAAGCAAGTTTTAAACTTTCCCTTGAATACCCCTAACGAGCCAATTATTAATTCTTTGCATTTGGAAGATCAACTTATTGAGGAGATCATGGAAAATGTTACCAACAATGATAGCTTAAGCCAACAGGGATTAGACCAGtTCATTAACACGGTAACCAGCTGTGACGGTAGTAGTCAGGACTTTACGCTGACTGCCAAGAATTGTCTAATAGAGAAAACTTTAAGTCCGAATCTTTTTCATTCGGAAAATTCTTTTGTTGTCGAACATCCTGATATAGTAACCGATCAAACTTCCAGTATATTAAGTCTATCGCCTATTGTGGAAAGCTTTACTCCACTTGCTTTGTACACAGAAAGTTCATGTGTTATAGAACATCCGGATGTAGAAACAGATCAAAgtgtttttgttcaaaatcCAGAGACAGATGCGGAAACTTTTGTTCCCGACTTACTGGAAACCGAAAATTCTCCTCTTGTGGAATATTCAGATAAAACAACAGATACTATTTTTCGAGAAGATATAGAACAGACTTTAGTAAAAGATTTAAGTCCATATCCAAGTGTTCAAGAAGAACTGGATCATCAAATTATAGAACAAGAAGCCACAGaaaatCTCTCCTCGCCAGCTCCCCTTGTGGTAAAAGTGCAATGTCCTGGCTTTTCCCTTGATCTCCAGTTAAATCCAGAGCCAGCGGAAACCCTCAATCGTAATCTTAATGATTCGgataatgaacttttttcctCTGCCGATATTTCCACCATACCTTTGCCCGATCATTTAATACACAAAATGATTGAAATTTATCGCAAATTTCCTCAACTTTGGAATCCCAATCATTTGGATTACAATTCACGTACTTTAAGACGTCAAGCTTGGTGTTTGCTTACAGCGGAATTCAACTCTGCCGTAGAAAAACAAATATCCTGGCGTACTTTGCATCGTAAATTGACAGATTATGCCAAATactataagaaattaataatgGAGCAGGAAGACTATGAACTGCTGGCAAATAAATGGACTTTTTATGAAGATTTTAAATTTCTGGATGATGTGATTGTCGTAAACAATGAACTGCAACGCAGTGTCCATCATCgtgataataattttaaaattatagccACTTATAAGACTTTACCCCAGCTATGGGATACTAAACATCCCGATTATAATAAACGTGGCAATAAACAACGTAATATTGAAATTATGTGCAATAGATTGCAAGAGGaaaacaatttacaattgaCTACAGAACGTTTGAAAAATCGTCTTATAGAGCTGAGAACTCAATACAGAACAGCCAAAAAGCAACGCcttaaatgccttaaaaataaacaaaaattttctccaGACGAATTTGAATATTACGAAGGCCTAAACTTTCTAGATGACCACATAGACCCTTTTACCTGTGATAAATgtaaaatggaatttaaaaaacGTACAGACTACAAACAACATCTGAAGCGAGAACATGCACAAAAGAATGACCTGAGAAATCGTCCAACTATTTTACCTCATGAACCGGGTGtggaaaatatttgccacaTTTGTGGTATAAAATTTACCACACGCAGCAATTTAATGCATCATGTGAGACGTCACGAGGGCATACGAGATTATGCTTGTACCATGTGTCCGAAAAAGTTCTATGCCTCTCATGCTTTAAAAGTCCACATAAGATCTCATACCAAAGAATGTCCGTATACGTGCGAAAAATGTGGCATGTCTTTTGTTAGTGCCAGCAAACTGAATCAGCATGTTAAGAGACATttgaataaaaaagattttcaatGTGATTTTTGTACGAAGGCCTTTTTTACCGGTTTCGAAAAGGATCGTCATGAGAGACGTCACTTGAATATTCGCGACAAAGCTTGTCCCATTTGTGGCAAAACTTTTGTGGCCGGATCGTCGTATTATACTCATTTAATGTTGCACGATGATACGAAACGTTTTGAATGTGATAAATGTAATATGAAATTTGCCCAATATGCCGGTTTGTACAAACACAAAAAGAGGCATCATATGtaa
- Protein Sequence
- MLKVKSAINQANYSSLSFLGDQQQQPVHLPDHLKCGEVFTWLCADELYGVECKLCEDHPLCPLSEFPQHMDIWHTEWAEETEDNEGNNMEVHFTDDDEEDGIYKNDRALVFTSKDCGSFKPDHELHSDKLISQQDQHEEILEPFEQVLIEQDISINTIQINEDTNDEEYFKDANVQVAEANQCQIENKQKQKQKKSFNRNATLKHIINKQKAASNEITESERDLPEILRDMNLLKESDQTESETIENEINKRDYQNITKYSSNKTNTLRNNWRLGKTFETEKETSEREQETSEREKETSEKGREASEKEKEANEIEKETNKRKIETRERNKKTKEAQNDLTESGKQKTSERDKETKTEANESELCIQEKGNGEIETSNNEYLKYQDFLKETLEIQKKHEHFLKNTKKSSKKVKEKETITKLFADAKETSENETQNIDFYECLRKSKEIRRKAEKYMKRSNRKNAKENKKAVTKESGKLLNESRTKVSVDVQQTSATETTTETVWECIQKSRELRNQAEYLLREFERKLNENEKRKKANKKQYESETEKMAHVKNYLKNDKLSIVKEPLDNDAANLRKTRKSLRISRKNLEYSENSKQVNETDLELRGTNENEKPHSHNEEEEVTNSFKDESEEKEKENKREFNESELDDLQNQRNYQTLSNGLKRKHLPDLNKRNEFKRKLRNYTSEREDLAQQSAKRLRTEPSWKRRTIQKALKRNKFSSETRFSNTKRSRRKSIGEVKEENNITDNFFANSSNNEFCANSDFQECEISLPIAKSSGVKRLDEEEQKGDPLTDSNVQAKEKVNEAVSQTEQISLCSLNLSQKEESGVNTKQTLVTQFFANIKDQQQGTSKSLNSSEKLEHIASSEQLSLQVACSNQDSCTTPTTESSSPFSPKTEEEHFEFYEPKEKLNKQHISHLIKLYREHPRLWDQSHTEFCEPQVCRKSWQRITDEWNEFCKRKFTIAEIRIRICTLCQRFMQERDRLALEGEVDECAKFPYYEQMQFLEQQKSLQKRRELYDQQNEKILEIYQHFPILWHISGYKLKKAKERAQAIESISKTLKLFDLHLSPMAVRKRLRSLRKCYRLEKIRHLHAQVEQTPFEFMFRHYERMNFLDKHIDPFVCRICGKIFENLQNFRLHLETESHGSVLAEESEAEQDLDNSAVEDSVSATNNVDFNITDESCLANIQENELKETETETFTFSAISPHPMRECFSEPENSRDILQRFTPFPSSTPPIPIIDSQLLQNSENPSSNIKQVLNFPLNTPNEPIINSLHLEDQLIEEIMENVTNNDSLSQQGLDQFINTVTSCDGSSQDFTLTAKNCLIEKTLSPNLFHSENSFVVEHPDIVTDQTSSILSLSPIVESFTPLALYTESSCVIEHPDVETDQSVFVQNPETDAETFVPDLLETENSPLVEYSDKTTDTIFREDIEQTLVKDLSPYPSVQEELDHQIIEQEATENLSSPAPLVVKVQCPGFSLDLQLNPEPAETLNRNLNDSDNELFSSADISTIPLPDHLIHKMIEIYRKFPQLWNPNHLDYNSRTLRRQAWCLLTAEFNSAVEKQISWRTLHRKLTDYAKYYKKLIMEQEDYELLANKWTFYEDFKFLDDVIVVNNELQRSVHHRDNNFKIIATYKTLPQLWDTKHPDYNKRGNKQRNIEIMCNRLQEENNLQLTTERLKNRLIELRTQYRTAKKQRLKCLKNKQKFSPDEFEYYEGLNFLDDHIDPFTCDKCKMEFKKRTDYKQHLKREHAQKNDLRNRPTILPHEPGVENICHICGIKFTTRSNLMHHVRRHEGIRDYACTMCPKKFYASHALKVHIRSHTKECPYTCEKCGMSFVSASKLNQHVKRHLNKKDFQCDFCTKAFFTGFEKDRHERRHLNIRDKACPICGKTFVAGSSYYTHLMLHDDTKRFECDKCNMKFAQYAGLYKHKKRHHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -