Prud037731.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101450.1:108002065-108004034[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.26 30 6.8 0.4 1 23 288 311 288 311 0.92 2 9 6e-06 0.00068 21.4 1.3 1 23 343 366 343 366 0.98 3 9 7.4e-05 0.0084 18.0 1.8 1 23 375 397 375 397 0.97 4 9 6.4e-05 0.0072 18.2 0.1 1 23 405 428 405 428 0.94 5 9 2e-05 0.0023 19.8 0.2 3 23 436 456 435 456 0.98 6 9 0.045 5.1 9.2 0.1 3 23 466 487 464 487 0.93 7 9 0.00075 0.085 14.8 0.1 1 23 495 518 495 518 0.97 8 9 2.6e-05 0.003 19.4 1.0 1 23 524 546 524 546 0.97 9 9 1.3e-05 0.0015 20.3 1.8 1 23 552 575 552 575 0.97
Sequence Information
- Coding Sequence
- ATGGAGTCATGTTTATTGTGTTTGGAAGTAAACAAAGACATATTAGATTGCATAAATGCAAATTCAACACGATGGCAGGAGCTTGACATAACGAATACGATTGAAAAGCACTTTTGGTCATTGaACGCCATTCAACCAAGCTCATGGATATGTTTATCATGCTGGCGAGAAGTAGACGGTTTTCACAATTTCTATTTGCGCGTAGAAGAGGCTCATGTGAATTTTGGCAAAATAAAAGTGGAGGATTTAGCAGTGTCTGTGGAATTTAAAGAGGAATTAGTGCAAAATGCTGTTATTAGAGATAAAGAAGGAGAAGTGGGTAAAGATAATATGGCGTTTTGCTTTTTAGAACCGGAAATACTAATAGATCAAGCTCAGGCGGTACCAGAAATAATCATAACCCAACCACCTCCATGCGACTTGATTGCTGATAAAGAAAGTGCAATTAACGAACCTCTAGATGAAGTCGACTTAGAGGATATGCCGCTTAGTCAGGCACGCAAACGATTGAAATTACAAAGTGACGTGGCAAATAGAGATCCtctagaaaaatctaaaaaatttaagaagaaaAGAATTTCTAAAGCAAAAGTGGctgtaaaagaaaaatcaagTGAAAAGACAAAGACCGAAGATATTGAAGTAAAAGAAGAGTCAGCGGATTTAAATCATAACGATTCGAAGCTTAATGATGATTACAATGATAATGACAATGATGCTTCAGATGTAAACTATCAGTCAGATAAAGATACTTCAGAAAATTCAGATAGCGATAAAGAAAAGGCTCACAGTGTACAAAGCTTAAAGCGGAAAGAGAATGATAAATTTATAGTTGAACACTTTAAACTGCTCGGCTTTAAGTTTCTCTGTGATCTTTGTCAAGTTCCCTTCGAAGATTTCACCACCATGCAGAAACACTTTATTAAGGCTCACGAACAACGTGGTTATGTTATTTGCTGTAACAGAAAAATTTACGATCGTAGTCGTTTAGTTGACCACCTCCACTGCCACGTAAATCCTGACCATTTTAAATGCAACGAATGTGGTAAATCCTTGTCCGATCGCATGACGTTTCAGAGTCACATGCAGCGTGTACATAGGGCAGATGAGGTTGTTAGACAACATAGTTGCGACGTGTGTGGAAAGTCCTTTGCAAAGTCTTATGTGCTGAGAATGCATAAATTAACTCATATACCGGAAGAAGAGAAAAAGTTTCCTTGTAGCGATTGTGGGAAAAACTATGGCAGTCCCTACCAACTCAATATACATAAGCAAGCTGTACATCTTAAGCTATTTGCAAAAATCTGTAACATATGCGGAAAAGTCGTAAACTCAAATGCAGAATTTAAGGTACATATGAACAAGCACGAAGGCGTTTCCCAGCCAGCTATTAATTGTGATATTTGCGGCTTACGTTTGACAAGTGAACGTGGCCTAAAGCTGCACAAAGCTTCTCAACATCCGGTTGGAGGAAAAAAAGAGCATCCATGTCCCATATGCCCCAAAATATCGCCAACTCTTACGGCAGTTAGAAAGCACATAAATACCATGCATATAAAAGGCTACGATCACAAATGTAGTTTGTGTGAAAAGGCCTTTCGGAAGGCTGAATCGTTAAAGGAACACATTGCATCACATACTGGAACTTCTTTATATACGTGTCCTTGGTGCCCAAAGACGTTTAATTCAAATGGTAATATGCATGCACACCGAAAAAATAAACATCCTAAAGAGTATTTAgaattaaaactacaaaaatataattag
- Protein Sequence
- MESCLLCLEVNKDILDCINANSTRWQELDITNTIEKHFWSLNAIQPSSWICLSCWREVDGFHNFYLRVEEAHVNFGKIKVEDLAVSVEFKEELVQNAVIRDKEGEVGKDNMAFCFLEPEILIDQAQAVPEIIITQPPPCDLIADKESAINEPLDEVDLEDMPLSQARKRLKLQSDVANRDPLEKSKKFKKKRISKAKVAVKEKSSEKTKTEDIEVKEESADLNHNDSKLNDDYNDNDNDASDVNYQSDKDTSENSDSDKEKAHSVQSLKRKENDKFIVEHFKLLGFKFLCDLCQVPFEDFTTMQKHFIKAHEQRGYVICCNRKIYDRSRLVDHLHCHVNPDHFKCNECGKSLSDRMTFQSHMQRVHRADEVVRQHSCDVCGKSFAKSYVLRMHKLTHIPEEEKKFPCSDCGKNYGSPYQLNIHKQAVHLKLFAKICNICGKVVNSNAEFKVHMNKHEGVSQPAINCDICGLRLTSERGLKLHKASQHPVGGKKEHPCPICPKISPTLTAVRKHINTMHIKGYDHKCSLCEKAFRKAESLKEHIASHTGTSLYTCPWCPKTFNSNGNMHAHRKNKHPKEYLELKLQKYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00900864;
- 90% Identity
- -
- 80% Identity
- -