Prud022080.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101449.1:17878462-17881835[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.018 2 10.5 0.1 3 23 15 35 13 35 0.96 2 16 0.022 2.4 10.2 2.3 1 23 41 64 41 64 0.93 3 16 0.35 40 6.4 0.5 3 23 69 91 68 92 0.85 4 16 0.011 1.2 11.2 0.3 1 21 99 119 99 120 0.93 5 16 2.5e-06 0.00028 22.6 0.6 1 23 128 150 128 150 0.97 6 16 0.00016 0.019 16.9 3.5 1 23 156 178 156 178 0.98 7 16 0.0001 0.012 17.5 1.3 1 23 184 206 184 206 0.95 8 16 3.5 4e+02 3.3 0.2 2 23 658 680 657 680 0.94 9 16 0.43 49 6.1 0.6 1 10 704 713 704 726 0.79 10 16 0.65 73 5.6 3.3 1 23 734 758 734 758 0.92 11 16 5.7 6.5e+02 2.6 0.9 3 23 764 785 764 785 0.94 12 16 0.0093 1.1 11.4 0.3 2 21 798 817 797 818 0.93 13 16 0.00028 0.032 16.1 0.9 1 23 826 848 826 848 0.98 14 16 2.5e-05 0.0028 19.5 1.3 1 23 854 877 854 877 0.97 15 16 9.1e-05 0.01 17.7 1.3 1 23 883 905 883 905 0.98 16 16 0.00059 0.066 15.1 1.1 1 21 911 931 911 932 0.95
Sequence Information
- Coding Sequence
- ATGTTGGTTAAACTTTCTACAGACGGTGTGCCGAAACTTTTTTGTCCTATTTGCAATAAAGCCTTAGTATCACTTGTTGGCTATGTAAAGCATGTGAAAAAACATGAACCTCCTGGTGGTTTCCTATGTCGTTATTGTGAAGCTCGTTTCTGTTCGGATGATGAATTGAAAAAACATCGTGAATCTGAACACACCATTATCGCCTGTCGTCTATGCAAAGATGTCACCTTTACCAATGAAGATGATTATCGGGCACATATTCGTGATATCCATCATGGTGTGGATAGAGAGATATTTACTTGTGAAAAATGTGGAGCTACTTACAAAACTATTGATCCCTACCGTCGTCATACAGAAACGGAATGTGGTCGTATTAAGCCATATAAATGTAATATATGTCCCATGGCATTTGTAACGAAATATAATTTGAAACAGCATTTGGATAATCATTCGGGCGAATTGAAGTTTTGTTGCAGTTATTGTGGACGTAACTTTAAGCAAAAGGCTCGTTTAGTAGAGCATGAAAGAACGCATACGGGTGAAAAACCCTATAAATGTGATGTTTGTGGAAAAAGTTTCTCCCATCGGGAAAGTATTGTTACACACTCTTCCATTCATACCGGCATTCGTTTGGTAGAATGTAAATGCTGTTCATTAAGATTTTCCTGCTATTCGAATCTACTCAAACATCGGCGAAATCGTCCCGACACTTGTGGTTTACCAGAGTACGATCCACCTCGTAATCGTATTAGAAAATTTACTTCAAGAATTCCGGCCACTTTAAACCCTACCTCTGAAATCAAGGTGGtaaatgtcaataaaataatcaaACCCGGTGATCAGGCTAAAGCGGTAACTATGAGAAAGGATTCAATTGAAAAACCAATAAGAATAAAACCAACTGCTCGTAAACGTACTGGAGGTGCACCAACACCATCCATTACTTTACGCAAAAGGAGTACTAGGAAAAAGGTTATACAATTCGATGTCAAAGAAGATGATGATGACCTTAAAAATGAGGATTTGGATGATGAAGATAATATTCCTCTCAAGCCAAAAGAGAATACGGAAACAACAATTATTGATGAAAACAGTATGCCACCACCTCCAGAAGTCATAATGAGGGATAAAAGCCCGGAATATGAAATCACCACTCGATGGTCGGATGATAGTGAGGATGAATATGTGCCTGATTTCGAATTAGGCGACTCCGATTCGGATGAAGAagaatatttatctattaaaGATGCAAAAATTCCAGTGTACGCCACTTCTATTAAACAAGAAAACTATGATGAGAATGATAATGAGGAGGTAGTTACCACCAATATACAAATAGAGCCTTTGGGTGATTTCGAATACAACCGTATGGATTCCTACAGCGCTGAGGTTAAATACGAAGATGAAGAAGACAATTTATTTGATGAAAAGGACCGCATATTAGAGCACCTGTTAAATGAAAATGATTATAGCCAGTTGACCGAGCAAGAGCAAGACCGATCTAATAGCCTGGCTAAATTGAAAAGGAAACGTAAAGCGCTTAAGAAAAAGCGTACTCAAGAGTGTGAAGATATTTTGGAAGAGGCGGAAGTCGCTTACATCAAATATGAGGAAAGTGATGACCAAGGTGATGGCGTAGAAGATATtttggaagaaaaatataagGTCGAGGATGATATTAAGAAATGTTATGTTTTGCTAGAAGATATTTCAAACTGTTTTCCTGTATTGAAAGAAACCTCTACCGTAAAAGTACCTCGCAATTTTCAATCATTCTTTTCGAAATCAGAGAAGatcaagaaatttattaaaaaacgtggGAAATATCGGCCTAGACGTTCAAAGGTAATTAAAACCGAAGCCGGATCTGATGAAGATACGAAAGCTAGTAAATCGTATCGTTTAGCTTCAATATCGGCTAAACAGTTAAGAGAACGTATGAAGCTTTTGAATAAACGCGATAAATCTTGGCAGTGTGCAGACTGTATCAAAATCTACTATATGCGCAAACCTTACGAAAAACATCTAAGAGAGGATCACAAAAAGTCTGAACATTTTATTAAGGaagttttcaaaaatgattTGGACGATGCCACATCTGAAGATGTCTTCAAATGTCACATATgcgataaaatatatttgatggAAAAACGTCTATTATCGCATATACCCAAACATGGGCCAGACGGTAATTTGATACACAAATGTCCCTGTTATTGTACTTTATATTTCCGTACGCGCGAGGAGGCCACCGCTCATGCCCAGGATAAACACAAAGAGCTTTTGTGGTGTGAAATATGTGAGAAATATATGACAGGTTGCGATGCGCTTAAATCACACAAAGCACGCATACATGGTGGTAACAAGGAGTATAAAAATTCTCGTAACTTAGTCTGCATGAAATGTGGGAAGAAATTTATGGGTCGCACACAACTGACTGACCATGAACGTTCCGATTGTGGACGTTTGCCGTTGTATCAGTGTCAAGAATGTGGCAAATGTCTAACTACAGCTGGCATACTTAAAACACATATGTTATTGCATAACGATGCGCGGCCCTATCAATGTGATACATGCGGGAAAATGTTTAAGATTAAGGCTCAAtataaaactcatattaaataTGCCCACACTGACGAAAAGCGGTTCAAATGTCACctgtgTCCTAAAGAGTATCCTTATCGTGAAAGTTTATTGACCCATATGTCGGTGCACACAGGCATTAAACGTTTCATGTGCAATGGCTGTGGCAAACGTTTCACCTGTGTTTCTAATCTTCAAGCTCATCGCAAAGTTCAGGCAGAAACTTGTGGTCTTTTGCCCCTTAATGCTAAAGCCACCCAGTATATGGGAGTGCAAAAGGGCAATCTCTTAATGGGTGCAAAACCGGAACCCGGCTTAGACTATGTGGAAACTAGAACGTTTGTAGCTAAGGATGTAATAACACATGACTTGCCCATGGCCCAGgaaataaattatcaaaacaGAAACAATATGCAACAAGATCCATCACTTAGCGATGGTATTCCTTTAAACTACGTAACTTCGGGATCTGAAATTATACTTATGTATAACAGAGATTAG
- Protein Sequence
- MLVKLSTDGVPKLFCPICNKALVSLVGYVKHVKKHEPPGGFLCRYCEARFCSDDELKKHRESEHTIIACRLCKDVTFTNEDDYRAHIRDIHHGVDREIFTCEKCGATYKTIDPYRRHTETECGRIKPYKCNICPMAFVTKYNLKQHLDNHSGELKFCCSYCGRNFKQKARLVEHERTHTGEKPYKCDVCGKSFSHRESIVTHSSIHTGIRLVECKCCSLRFSCYSNLLKHRRNRPDTCGLPEYDPPRNRIRKFTSRIPATLNPTSEIKVVNVNKIIKPGDQAKAVTMRKDSIEKPIRIKPTARKRTGGAPTPSITLRKRSTRKKVIQFDVKEDDDDLKNEDLDDEDNIPLKPKENTETTIIDENSMPPPPEVIMRDKSPEYEITTRWSDDSEDEYVPDFELGDSDSDEEEYLSIKDAKIPVYATSIKQENYDENDNEEVVTTNIQIEPLGDFEYNRMDSYSAEVKYEDEEDNLFDEKDRILEHLLNENDYSQLTEQEQDRSNSLAKLKRKRKALKKKRTQECEDILEEAEVAYIKYEESDDQGDGVEDILEEKYKVEDDIKKCYVLLEDISNCFPVLKETSTVKVPRNFQSFFSKSEKIKKFIKKRGKYRPRRSKVIKTEAGSDEDTKASKSYRLASISAKQLRERMKLLNKRDKSWQCADCIKIYYMRKPYEKHLREDHKKSEHFIKEVFKNDLDDATSEDVFKCHICDKIYLMEKRLLSHIPKHGPDGNLIHKCPCYCTLYFRTREEATAHAQDKHKELLWCEICEKYMTGCDALKSHKARIHGGNKEYKNSRNLVCMKCGKKFMGRTQLTDHERSDCGRLPLYQCQECGKCLTTAGILKTHMLLHNDARPYQCDTCGKMFKIKAQYKTHIKYAHTDEKRFKCHLCPKEYPYRESLLTHMSVHTGIKRFMCNGCGKRFTCVSNLQAHRKVQAETCGLLPLNAKATQYMGVQKGNLLMGAKPEPGLDYVETRTFVAKDVITHDLPMAQEINYQNRNNMQQDPSLSDGIPLNYVTSGSEIILMYNRD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01261217;
- 90% Identity
- -
- 80% Identity
- -