Prud039519.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Panzeria rudis
Gene Symbol
-
Assembly
GCA_956483635.1
Location
OY101451.1:1761032-1764623[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 11 5.5e-05 0.0062 18.4 3.0 1 23 102 124 102 124 0.96
2 11 6e-06 0.00068 21.4 5.8 1 23 130 153 130 153 0.98
3 11 8.3e-05 0.0094 17.8 1.0 1 23 159 181 159 181 0.97
4 11 0.0016 0.18 13.8 2.6 3 23 189 209 187 210 0.95
5 11 2.8e-07 3.2e-05 25.6 0.5 1 23 217 239 217 239 0.98
6 11 0.0047 0.53 12.3 1.3 3 23 247 268 245 268 0.95
7 11 0.11 13 8.0 0.1 3 23 276 295 274 295 0.95
8 11 1.5e-05 0.0017 20.2 2.1 1 23 301 323 301 323 0.98
9 11 0.0096 1.1 11.3 5.2 1 23 329 351 329 351 0.99
10 11 0.033 3.7 9.7 1.3 1 23 357 383 357 383 0.84
11 11 0.058 6.5 8.9 1.8 1 21 389 409 389 410 0.94

Sequence Information

Coding Sequence
atggtacGTAGTCGACGCTCGATATCAAAAGAAGATGCTTCTTCTGTATTGGCCGATAGTGGCATATCGTTGTCTTCACCCCCTTCTAGTCGTAAACGTTTTGCCCGTCTAAAAGAGCATGAGGAAGAGGCTTTATTGAATAAACTTTGTGTAACCGATGATGAAACGGATCCTGAAATTATAGAATTAAATACCGTACAAAATGTTGTTATCAgcgataatgatgatgacgaccCATCTCAAGATTCAGAAAACTACAAGGTTTATGCTACACAACCAGCTGCTAAAAGGGTTCGCAAATCGTATATATGTGAAACTTGTCACAAAGAATTTCGTGGCAAATCCGATTTAACAAGACACAAGTTTGTGCACACAAATGAAAAGCCATACAAATGTAAAACATGCAATAAATGCTATAGACAACAAATTAATTTGAGAAATCACATAAAATCAACTCataagaaagaaaaagaatttGCCTGCAAACAGTGTCCAAAGAAATTTGCTCTCAAGGAGAGATTACGATTGCACATGCGTTTGCATACAGGAGAAAAACCTTACGGCTGCCAACAGTGCGAAAAACGTTTTGCCAGGGGTGGTCAGttACATCAACACATGGTTACCCATCATCAAGATGCTCCCAAACAATTTAAATGTGAAATCTGTTCACAGCGCTTTTCAACACCATCCAACTTGAAGGCTCATGTCCTCAGCCATGAAGAAACACCCGATTGGTTTTGTGAGATCTGTAAAGAACATTTTGCCAACGATGTGCTTTTAAAAGCGCATATTCATAAATTACACTATAAACTTAAGCAACTGGATTGTGATATTTGTAAAAAACCCATCGAAGAAAATGACCTCATAAGCCATATGAAAACTCATAGAAATATTAAAACTCATGTTTGTGAAACTTGCAATTCAGTATTTACACAAAAATCCCAATATAATGTACATATCCGTATGCACACTGGAGAGAGACCCTTTCAATGTAGAATTTGCTGCCAAACATTTGCCCATTCGAGCGTTTTAAAACTTCACATAAGAAAACATACTGGCGAAAAGCCCTTCAATTGTTTGCTGTGCAAATTCGATGAAGTGGCCTTTTCTCAATTGGCTCATTTAAAAACCCACATGAAAAAGATTCACAAACAATTAAAACCTTACATGTGTGAGGGCTGccataactttttcaaaatcaaaattgatCTCGAGACCCATCagcacaaatgtaaaaaatataccaGAAGTGGAAAGGAGCAAGATGGCCAGAATAATGAATTACAAACCTTGTCGCACATACGTTTTCTTATGGCAATATTACTAAAGAAAATCTCATCCGAACAGAAACTGCAACAGTTGGGTTTTGAAAAACGTTTAATCGACAATGTTGTTATAGCTGCTTTAAAAGTGGCCCATCGTAAAGCCTATGATGACTTGAAGTTGTCATTTTTGGAAAGAATGCGTTTAAATGTGGAGGAATTTCTCAACTGGATTGTGCCCTCCACGGTGATGGATCAATTTCGTGCAGAAAaccaaaatatcgatattatttTGGAAAAGATTGTATCCATGTACAtgaaacaaaagtaa
Protein Sequence
MVRSRRSISKEDASSVLADSGISLSSPPSSRKRFARLKEHEEEALLNKLCVTDDETDPEIIELNTVQNVVISDNDDDDPSQDSENYKVYATQPAAKRVRKSYICETCHKEFRGKSDLTRHKFVHTNEKPYKCKTCNKCYRQQINLRNHIKSTHKKEKEFACKQCPKKFALKERLRLHMRLHTGEKPYGCQQCEKRFARGGQLHQHMVTHHQDAPKQFKCEICSQRFSTPSNLKAHVLSHEETPDWFCEICKEHFANDVLLKAHIHKLHYKLKQLDCDICKKPIEENDLISHMKTHRNIKTHVCETCNSVFTQKSQYNVHIRMHTGERPFQCRICCQTFAHSSVLKLHIRKHTGEKPFNCLLCKFDEVAFSQLAHLKTHMKKIHKQLKPYMCEGCHNFFKIKIDLETHQHKCKKYTRSGKEQDGQNNELQTLSHIRFLMAILLKKISSEQKLQQLGFEKRLIDNVVIAALKVAHRKAYDDLKLSFLERMRLNVEEFLNWIVPSTVMDQFRAENQNIDIILEKIVSMYMKQK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01314024;
90% Identity
iTF_00760348;
80% Identity
-