Basic Information

Insect: Panzeria rudis
Gene Symbol: KHDRBS2
Assembly: GCA_956483635.1
Location: OY101450.1:4180640-4207887[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 0.48 54 6.0 4.4 2 23 433 455 433 455 0.94

2 17 0.073 8.3 8.6 5.2 1 23 490 512 490 512 0.96

3 17 0.0033 0.37 12.8 2.2 1 23 523 545 523 545 0.92

4 17 0.00078 0.088 14.8 3.2 2 23 551 572 550 572 0.98

5 17 0.0019 0.22 13.5 0.6 1 23 578 600 578 600 0.98

6 17 0.0014 0.16 14.0 1.9 2 23 606 627 605 627 0.97

7 17 0.04 4.5 9.4 3.0 1 23 669 692 669 692 0.95

8 17 0.0097 1.1 11.3 1.2 2 23 699 721 698 721 0.95

9 17 0.96 1.1e+02 5.0 3.8 2 23 1057 1079 1057 1079 0.93

10 17 0.005 0.57 12.2 0.6 1 23 1086 1109 1086 1109 0.97

11 17 0.00075 0.085 14.8 5.2 1 23 1114 1136 1114 1136 0.97

12 17 2.7e-05 0.003 19.4 1.1 1 23 1149 1171 1149 1171 0.95

13 17 0.00014 0.016 17.1 0.7 1 23 1176 1198 1176 1198 0.98

14 17 3.9e-07 4.4e-05 25.2 0.3 1 23 1204 1226 1204 1226 0.98

15 17 0.041 4.7 9.3 0.8 2 23 1232 1253 1231 1253 0.95

16 17 0.094 11 8.2 0.9 1 23 1296 1319 1296 1319 0.93

17 17 0.033 3.7 9.7 3.4 3 23 1327 1348 1325 1348 0.89

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	0.48	54	6.0	4.4	2	23	433	455	433	455	0.94
2	17	0.073	8.3	8.6	5.2	1	23	490	512	490	512	0.96
3	17	0.0033	0.37	12.8	2.2	1	23	523	545	523	545	0.92
4	17	0.00078	0.088	14.8	3.2	2	23	551	572	550	572	0.98
5	17	0.0019	0.22	13.5	0.6	1	23	578	600	578	600	0.98
6	17	0.0014	0.16	14.0	1.9	2	23	606	627	605	627	0.97
7	17	0.04	4.5	9.4	3.0	1	23	669	692	669	692	0.95
8	17	0.0097	1.1	11.3	1.2	2	23	699	721	698	721	0.95
9	17	0.96	1.1e+02	5.0	3.8	2	23	1057	1079	1057	1079	0.93
10	17	0.005	0.57	12.2	0.6	1	23	1086	1109	1086	1109	0.97
11	17	0.00075	0.085	14.8	5.2	1	23	1114	1136	1114	1136	0.97
12	17	2.7e-05	0.003	19.4	1.1	1	23	1149	1171	1149	1171	0.95
13	17	0.00014	0.016	17.1	0.7	1	23	1176	1198	1176	1198	0.98
14	17	3.9e-07	4.4e-05	25.2	0.3	1	23	1204	1226	1204	1226	0.98
15	17	0.041	4.7	9.3	0.8	2	23	1232	1253	1231	1253	0.95
16	17	0.094	11	8.2	0.9	1	23	1296	1319	1296	1319	0.93
17	17	0.033	3.7	9.7	3.4	3	23	1327	1348	1325	1348	0.89

Sequence Information

Coding Sequence: ATGGATAAATATGTGGAAGTAGAAGAATTAAAAAGAATAGCTCCAAAGTTTTTGGAAGATTTGCGGATGGAACAAATGCGTTTAGCAGACGATTTTCCAATATGCGCTCTTTTGATTGAAGATGCTTTCGATCGTTTTTTTACCACTGGTCTGTTGCCGGGAGATGAAAACTATGCTGATGTTGTTAGCCAAAAGCCAATAAGAATCACACAGAAAGTCCTCGTACCTGGTAAACTTCTGGCTTCGAAACGGAGTTATTTAACAAGTCTTCAGGATGAAACACAATGTCAGATACTAATAAAAGGTAAAGATTCTATCAACGAtctggaaaaagaaaaaaaattgcgacATTCAGGTGACCCGCGATTCCATCATTTGAATAAAGATATGTTTTTGGAAATAAGTACGTTATCTACACCAATTGAATGCTATAGTCGTACTGCATATGCGTTAGCAGAAATACGCAAATATTTAACATTCGAGCAAAATGATGCTGCTCTCGAAGAATTGCATGAAATGGAAATCGGCACGGAAATTGTTGGTTGCACGGAACATGTTAATGAACAATTGAATCGGGATAACGTTATACAAGATCCTCTACTAGTAGACTTGGGCTTCAAGGAACCTGTTCTACCATCACCGTTTTTAGAGAACCCGCCGATATCTGAGAATAATCCAAATTTTATAAGTATCGCCAACAAACTAATAAAGCTGTTGGATGAAACTGTCTTAAATCCAAACTTTCAACGTCCAGAAGATGAAAATATGACGTCGTCCATCAATATAGCACCTAAATCTGATAATTCTCCGGGATTATTTTACTTAAAGGATAAAAagagtaataaaataataaaacatcgcattttaattaaaagtgcTTTGTATCGCTGCCTTAGAAGAGGGAAACACGAATCAGTTGAACCAGAAGAAAATGACAATTACGAACCTTTTACCATAGAATTTCTTCAAGAAAGTCCTTCTGAGCTTGCTTTTGAATATACGCCACGagaaataattatttcatttttagagATTATGAAAAACTATCCAGTTTTATGGGAGTTTCATGACAAACCATTCAACGAAGGCTATAGTAAAGCAACTGAAGATTTATGTGAAATAATCAATCTCAAGTGGTCATTgaatattgatattttaaaaatgcgaCGCAGCATTAACCGAGTTTTGAGATTTTATCGTTATTTGTTCCCATTTGAATGTATTGATAAATTTACGGAATATTTCAACAAATGTGCAGGTTTTTTCCCTTCCGATGTAATAAAAATTCCCCATGCTCGTTGTTCGCACTGCTCTATATGTTATAAAGAggattttcaattgaaaaaacatcTTCTTGAAGAACACAATTCTTTAAAGTGGCATTACAGATGTCAATACTGCATGGAAAGTTTTAGAGAAATCCGCGAATATGAGTTTCACAAAAGTTTGCCACATTATGTGGAAGTGTTTACATGTGAACAATGCCATAAAAgacttcaaaataaattttcatataaaaggcATTTAGATTTACACAAGCAAAAGAATAGTGAAAAACCTCGAAATTACATATGTGATGAATGTGGAAAAGATTTCAGAACTAGTGGTGAATTACGGTGTCACAAATCCTACCATGgagaaaaacaaatgaaatgtcATCTATGTCCAaagtcttattttaaaaatacgagTCTTATGATTCATTTGAAGACACACCGGAAGGAGTTAGATTTTATATGTGAAGTGTGTGGAAATGGATTCATTTGTGAGTCAAATCTTAAAAATCACATGGAAACGCATATGGGAATTCGTGTTACATGTAAAATTTGCGGTTTGAAGGTAAGGAAACATAATTTATCCCGTCACCTGCGAACGATTCATGTTGCTTGTGAAGGTACTATCGAAGAAACATTTAGAGCAAAAGGCCACAATCATAAACGGTATACTCAAGTACAATATGGTTCAAAACGAGCAAAACGATCCATAGAAAAACATCAACGTCAATACGAATGTAAAACCTGCAACATTCCCTTCGATCgtcttaaatttcttaaagatcaTAACAGAGAATGTCACTCTAATGTGTACAAGATACCATGTAAAATATGCAGTTCGCAATTATCAtccaaacaaaatttgaaacGTCATTATCGCGAAAAACACAAATTCAATGATGATCAAGTTCTGGAAATAATGGAAGAAAGGAAGGCTTGGCTGGACTACTTTGATATGGAGGAACCAGATACTGGCACTGTTTTTGCTTGCGAACGACATTTTTCACCCATTCAATTGACTAAAAGAGGCATTCGATCAGATGCAGTTCCAGATATACcTGAAGtgtttgaaattgaaaaatggtCTAAATTCGTGAATCACCTAAAGACtaatcattttgaaaatgaGGAAGCCTTTAAAATGTCAAAGTCTTTCTTACAGGATCATGACTATGCCTCAAGAAGCTCAAAGACCATATCCGCAGTTAAACCcccaataaaatttaacatggTTGCCGATTCAATTAGTCAACTACCACCATCGGAAACAGTTTTATTGGATCCTATCAAATTGCCACCTTTATTGGAAAAGCCTCAAAAATATACTAGAAGACAACgtgaaagaaattttgaaacttttgaaACATTACCGCCGCCTTTGTTGGAAAAACCAAACCAGTCCAATGATAAACTTCTTAACACAAGCTTGGCTGACCGTgtAGTCGAACCGGAAAATGTTCCTTTGACTGATGATAATAGTAACCAAGCAAATGAAAAAcaaatatcaAATCCTACACCTCTAAGTCGGTgccttaaaagaaaaatttcagaaaCAATATCTAAGAAGCAAAAAGCCACTGAGATTACTTTCGAGTATACACCAAGAGACATTATTGTATCACTACTAGAAAGTATGAAAAACTTTCCAGTTTTGTGGGAGTTTCATGAGCAACCGTTTAACAAAAACTATATTCACGCCATCGAACAATTGTGTCAGTTAACTAACGATAAATGGTCTTTAAATATAACTCGATTGAAAATGAGACGCAGTCTAAATCGAATTTTAAGGTTTTACCGATTTATGTTGACATACGATAGTATTGACAAGTTTGAGGAATATTTTGATAAATGTGCTCTATTTCTTCCCTCTTCTGCGGATGCAATCCCGCGGGCTCGATGTGCCTACTGTTGTATATGTTTCAAGAAAGACAGTGAATTGAGAAAGCATATTATAGCCCAACACAAGAGTTTAAAATGGCCATACAAATGTAACAATTGTGTTGAACGTTTCCGGGAGAGCGATGAATATGAGTTGCACAAACGGCTGCCACACTATGAGgaaatatttaaatgtgaaCGTTGTGATAAACGATTCAATCGTCGTCATTTATATAATAAACATGTGGATTCACATCAACGAACAATAGAGCGACGTATGATACCAGCCACTCACATTTGTGATCTATGCGACAGGCCATTTAGATCCCCCTCAGACTTAAACCGTCATAAATTGTATCATGgagagaaaaaatttaaatgccaCATGTGCCCGAAAGCATTTGCCTTAAAGATAACTTTAGAGATGCACTTAAGGGCGCATCGTAAAGAATTACATTATATGTGTGAGGTGTGCGGAAAGGGTTTTACCCGCAAAGCAATGCTTCAAGACCACATGAGCACACATACTGGTGCTAAAATTACTTGCAACATTTGTAAtttaaagttaagaaaaaataatttattgcgCCATCTGAAACTAGTACATGTTGCAACTGAAGGTACAATTGAAAGTACATTCAGAGCGAAATCACATCATTATACAAAGTATATATTTCCAAGACTGCCACAACAACGGAAACCAAAACGTTCTAAAGAAAAACAACCGCGTCATTACTattgtaaaaaatgtaaaataccCTTCGATAGTCTTAAAGTGCTCAAAGATCATAACAAGGAAGTGCACCCTGATGTTAAAAAAACTGCGTGTagaatttgtaattttgaatttatCCATCTGTCGAATCTTAAACGACATTGTCGTGAGGTGCATAAACTGCATATTTATCAAGTTTTCAGGTTGTTCGATCTGAATGATGATCTAAATACAGTGTTGTCGATGAAAAAGGAAGATTTAGAGAATATATCGGAAGCGGACTACCTAAGATTTTCCCAAAACTATCGGaatagtgaaaataaaataaatcattcccaagaagaaaattattttgacCAAGGAAGAATCGACAGTGATAAAATacaagatgaaataatgaaagcCGTGGAAAACCTTGATAACCAAGAAATCAGAGTTGATGATGACCATTCAatgaatgaatattttacagatcTTTTAAAATAG
Protein Sequence: MDKYVEVEELKRIAPKFLEDLRMEQMRLADDFPICALLIEDAFDRFFTTGLLPGDENYADVVSQKPIRITQKVLVPGKLLASKRSYLTSLQDETQCQILIKGKDSINDLEKEKKLRHSGDPRFHHLNKDMFLEISTLSTPIECYSRTAYALAEIRKYLTFEQNDAALEELHEMEIGTEIVGCTEHVNEQLNRDNVIQDPLLVDLGFKEPVLPSPFLENPPISENNPNFISIANKLIKLLDETVLNPNFQRPEDENMTSSINIAPKSDNSPGLFYLKDKKSNKIIKHRILIKSALYRCLRRGKHESVEPEENDNYEPFTIEFLQESPSELAFEYTPREIIISFLEIMKNYPVLWEFHDKPFNEGYSKATEDLCEIINLKWSLNIDILKMRRSINRVLRFYRYLFPFECIDKFTEYFNKCAGFFPSDVIKIPHARCSHCSICYKEDFQLKKHLLEEHNSLKWHYRCQYCMESFREIREYEFHKSLPHYVEVFTCEQCHKRLQNKFSYKRHLDLHKQKNSEKPRNYICDECGKDFRTSGELRCHKSYHGEKQMKCHLCPKSYFKNTSLMIHLKTHRKELDFICEVCGNGFICESNLKNHMETHMGIRVTCKICGLKVRKHNLSRHLRTIHVACEGTIEETFRAKGHNHKRYTQVQYGSKRAKRSIEKHQRQYECKTCNIPFDRLKFLKDHNRECHSNVYKIPCKICSSQLSSKQNLKRHYREKHKFNDDQVLEIMEERKAWLDYFDMEEPDTGTVFACERHFSPIQLTKRGIRSDAVPDIPEVFEIEKWSKFVNHLKTNHFENEEAFKMSKSFLQDHDYASRSSKTISAVKPPIKFNMVADSISQLPPSETVLLDPIKLPPLLEKPQKYTRRQRERNFETFETLPPPLLEKPNQSNDKLLNTSLADRVVEPENVPLTDDNSNQANEKQISNPTPLSRCLKRKISETISKKQKATEITFEYTPRDIIVSLLESMKNFPVLWEFHEQPFNKNYIHAIEQLCQLTNDKWSLNITRLKMRRSLNRILRFYRFMLTYDSIDKFEEYFDKCALFLPSSADAIPRARCAYCCICFKKDSELRKHIIAQHKSLKWPYKCNNCVERFRESDEYELHKRLPHYEEIFKCERCDKRFNRRHLYNKHVDSHQRTIERRMIPATHICDLCDRPFRSPSDLNRHKLYHGEKKFKCHMCPKAFALKITLEMHLRAHRKELHYMCEVCGKGFTRKAMLQDHMSTHTGAKITCNICNLKLRKNNLLRHLKLVHVATEGTIESTFRAKSHHYTKYIFPRLPQQRKPKRSKEKQPRHYYCKKCKIPFDSLKVLKDHNKEVHPDVKKTACRICNFEFIHLSNLKRHCREVHKLHIYQVFRLFDLNDDLNTVLSMKKEDLENISEADYLRFSQNYRNSENKINHSQEENYFDQGRIDSDKIQDEIMKAVENLDNQEIRVDDDHSMNEYFTDLLK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -