Basic Information

Insect: Panzeria rudis
Gene Symbol: ham
Assembly: GCA_956483635.1
Location: OY101449.1:145023992-145101038[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.53 60 5.9 0.1 2 20 290 308 289 312 0.76

2 9 0.028 3.1 9.9 4.1 1 23 319 342 319 342 0.95

3 9 2.2e-07 2.5e-05 25.9 3.3 1 23 348 370 348 371 0.96

4 9 2.6e-06 0.0003 22.5 1.7 1 23 377 399 377 399 0.95

5 9 3.1e-05 0.0035 19.2 4.9 1 23 405 427 405 427 0.99

6 9 0.0043 0.48 12.4 0.4 2 21 435 454 434 455 0.95

7 9 1e-08 1.2e-06 30.1 1.3 1 23 904 926 904 926 0.99

8 9 5.5e-07 6.2e-05 24.7 0.9 1 23 932 955 932 955 0.97

9 9 9.4e-05 0.011 17.6 6.6 1 23 961 983 961 983 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.53	60	5.9	0.1	2	20	290	308	289	312	0.76
2	9	0.028	3.1	9.9	4.1	1	23	319	342	319	342	0.95
3	9	2.2e-07	2.5e-05	25.9	3.3	1	23	348	370	348	371	0.96
4	9	2.6e-06	0.0003	22.5	1.7	1	23	377	399	377	399	0.95
5	9	3.1e-05	0.0035	19.2	4.9	1	23	405	427	405	427	0.99
6	9	0.0043	0.48	12.4	0.4	2	21	435	454	434	455	0.95
7	9	1e-08	1.2e-06	30.1	1.3	1	23	904	926	904	926	0.99
8	9	5.5e-07	6.2e-05	24.7	0.9	1	23	932	955	932	955	0.97
9	9	9.4e-05	0.011	17.6	6.6	1	23	961	983	961	983	0.98

Sequence Information

Coding Sequence: atgatattCGATCGTTATGCTGCTTCAGGCAGCACTGTTGATGACTACGAATTTGGTGcatttaaacaatatcaaaataatttagCCTCGCCCGACTCCACTAACACTTTACGATTGAACACAAATTCATCAGATATTAACAACTATCAGCATAATAGTCACCACCACCGTTTGAACGGTTTTAGTCAAAGTAATTCACCTAGTCGCACATTGGGCATAATAGATTCCAATTTGGTCAATACATTGCCACAATCACCCGCCCACATGGAACATTTATTTAGTAGTAAACTGCAAGCTGAGAGGCTTTTATTAGAATTGACGTGTCTACAGGAACCAATCTGTGATTTAAAGCAGCCAACAGCGGAGCATGGAGGAGTTTTTGCGAAACAACATTTGAGAAGGGGTACACGTTTTGGACCATTCGCCATAACGGAGACAACGGAAAAGTCAAATGCATGGGATATCCTGCCCATTAGCCATATTAGAAGTCTATTGCAGCCATCACCCGAAGTCAAGTCATTGCTTAAGAAGATTCGAACTTCATCTAATCCAGAACTGGAAAAAGAggctaattttaataatttttatgtagcAGGATGTcttTGGTATGAATCAAATCGTGATATAGAAGCTGGTGAAGAGATCATAATTGATGGTCGGCCCAAAGCTCTTTATGAGCAAAATGAATTGTTAACGAACGGCGAAATACATAATGGTtcctcaatacacagcagtgaTGATAGAAGCGAACGTGATAATGCCTCATTTTATGGATCAAATCTAAAACGTGATGAGGACTATAAAAAGGACAAATCTTCTGATCATATAAAAAGTGAATTAAGTGATGATGAAAATGGTTTTGATATACGCTGTGAAGTCTGCGATAAAACATTTCTACAACTAGAGCGACTTGATGATCATTTGGTTGCGACTCATCATTTTCGTAAAGACGAATTTTATTGTGAACTTTGCTCTCAGCGTTTCTGTCATCGGCCCTTGTTATTGAAACATCGAGCTATACAGCATAACGAAATACGAAAATATCCTTGTGAAAATTGTACTAAgGTATTTTGTGATCCCTCAAACTTACAGCGGCATATTCGTAACCACCACATTGGAGCCAGAAGTCACGCTTGTCCTGAGTGCGGTAAAACGTTTGCGACATCATCGGGCCTCAAGCAGCATACACACATTCATTCCTCGGTTAAACCATTCCAGTGTGAAGTGTGTTTCAAAGCCTATACCCAGTTCTCGAATTTGTGCCGCCACAGGCGCATGCATGCCGATTGTCGTATGCAAATTAAGTGTAGCAAGTGTGGTCAGAGTTTTGGCACAGTGACGGCTTTGTCCAAACATAAACGATTTTGTGATTCAGCCAACGTAGCACCTGCCGGTGTCGGTTTAACGAACAATTTAACACATCCTCTAGCACATCATCAAACCCAACCGCAATCACCTTCACCATCTAGAACATCTGGAGTAAACGGTTCATTATCCGGCAATATGACAACACCACCAAATCCTTTTCTATTTTGGCGTTCTACATTCTTTCCGGCTTTTCCACCAGCAGCTGCTGCTTTTGGTTTACAGGGCATGTTTCCTCAGCCACCGGCCACACAAACTCCCAACTTTTCGCCCATGTTCTCTAAAccaaatgttgattttaagCTACAGCAAATGAGATGCCAGCCACCGCCAGCGAATACACTCAatcacaacaacagcaacagcagcaacaacaatacaaacaacaaccagcacaataatgccataacaaaaacaacaaactctATACCCAGCTCTGCACCCAAACCGGATGTAATTTCTAGTACAGTTCCCGAGAATTTTGGTCTTTATTTTCCCTCTTTAGAAATGGATTATAAATTGAAACGTGAAAAATGTTTAGCGGAAAATCATATGAGAGCGTATAAAAGAGAGTCGTCGTCACATCATTTGACATCTGATGAAGAGACCCGCGAAGAAAGAGTAAAAGTAAAAttggatataaaaaaagaaaataaaaaagacacCGAAGAAGCAGCATCAGTCAAAAAGGAGGAGGAGGAAGATGTTTCATTGAAAGCAAATGATGATGATAagaaatccATTGATATCGTGTCCGTCTCACCACACCATGAAGCGGAAgctaaaaacaattttacagAACTGCCTTTGGATTTGAGTGTGACACGCAAGCGAAACAGTATGGACTCTAACTTTAGTCAGGATGAACAGAAATCCACAATAGATGATAATAACTCAGCAAATAGTCCGATTGCCGCCGAAGATCTCAGCAATAATGACAGTTATTCGCAGGCTCCTAAAAAATCAAGACGATTTAATAGCTCCGTTAATAGCAGTAGAACGCCAACGGCTTCACCTGGACCCACACCCTCCCCCTCTCCGCCTTGCAATGTGAGCAGTACAGCAGCTCATGAAAATAATGCAGCTGCATTGCCCACATGTCCGCGACCCATACATCCCATGCTGCTCGATGAGATCTATCGTACACGTGCATTAGAATCAACATTTCCACGCACGTTTCCTTTTTTAGGACTAATGGGCGAACGGGTGGCCTTAGATTCCAATGCATTACGCGCTAGAGAAGAGCAGCTTGCTGCCGAACCCATGTTTCATGAGGCTTTCCGGGGTCTATCGGCTGGTGCGGCTTTGCAAGTGGCTGCCCAAACTGGTAAAGTAAAAGATCGTTATACTTGTAAGTTTTGTGGCAAAGTATTCCCACGATCTGCTAATCTAACCAGACACTTAAGAACGCATACCGGCGAACAACCCTACACTTGTAAATACTGTGATCGTGCTTTCAGTATCTCTTCAAATCTACAAAGACATGTGCGcaatatacacaataaagaaagACCTTTTCGCTGCCATTTATGCGATCGTTGCTTTGGCCAGCAAACAAATTTGGATCGTCATTTGAAAAAACATGAAACGGATACAACGGGGCTGGGTTTGGCCATCAGTGATTCACCCAGTTCGAATGAAGCCGATCGTGAGGATTCATATTTCGATGAAATACGAAATTTTATGGATCGTGTTACGTACAATGAGGACTTGTACACACCCTCTAGCATAGGAAATGCCGAAAATGAGGCCAGTGATTATAATGCCAGTGATAATGACAATGATTTAACTGTTTCACGGCCTTCATCGGTTGGTGTTACAAGCGATCGTGCTAAAGCTATTGAGGCTAATGAAATCGTAGAAGAagattaa
Protein Sequence: MIFDRYAASGSTVDDYEFGAFKQYQNNLASPDSTNTLRLNTNSSDINNYQHNSHHHRLNGFSQSNSPSRTLGIIDSNLVNTLPQSPAHMEHLFSSKLQAERLLLELTCLQEPICDLKQPTAEHGGVFAKQHLRRGTRFGPFAITETTEKSNAWDILPISHIRSLLQPSPEVKSLLKKIRTSSNPELEKEANFNNFYVAGCLWYESNRDIEAGEEIIIDGRPKALYEQNELLTNGEIHNGSSIHSSDDRSERDNASFYGSNLKRDEDYKKDKSSDHIKSELSDDENGFDIRCEVCDKTFLQLERLDDHLVATHHFRKDEFYCELCSQRFCHRPLLLKHRAIQHNEIRKYPCENCTKVFCDPSNLQRHIRNHHIGARSHACPECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHRRMHADCRMQIKCSKCGQSFGTVTALSKHKRFCDSANVAPAGVGLTNNLTHPLAHHQTQPQSPSPSRTSGVNGSLSGNMTTPPNPFLFWRSTFFPAFPPAAAAFGLQGMFPQPPATQTPNFSPMFSKPNVDFKLQQMRCQPPPANTLNHNNSNSSNNNTNNNQHNNAITKTTNSIPSSAPKPDVISSTVPENFGLYFPSLEMDYKLKREKCLAENHMRAYKRESSSHHLTSDEETREERVKVKLDIKKENKKDTEEAASVKKEEEEDVSLKANDDDKKSIDIVSVSPHHEAEAKNNFTELPLDLSVTRKRNSMDSNFSQDEQKSTIDDNNSANSPIAAEDLSNNDSYSQAPKKSRRFNSSVNSSRTPTASPGPTPSPSPPCNVSSTAAHENNAAALPTCPRPIHPMLLDEIYRTRALESTFPRTFPFLGLMGERVALDSNALRAREEQLAAEPMFHEAFRGLSAGAALQVAAQTGKVKDRYTCKFCGKVFPRSANLTRHLRTHTGEQPYTCKYCDRAFSISSNLQRHVRNIHNKERPFRCHLCDRCFGQQTNLDRHLKKHETDTTGLGLAISDSPSSNEADREDSYFDEIRNFMDRVTYNEDLYTPSSIGNAENEASDYNASDNDNDLTVSRPSSVGVTSDRAKAIEANEIVEED

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01177160;
90% Identity: iTF_00760326; iTF_00899911; iTF_00900846;
80% Identity: -