Prud037803.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- pita
- Assembly
- GCA_956483635.1
- Location
- OY101450.1:109420753-109436903[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 5.2 5.9e+02 2.7 0.6 1 17 67 83 67 84 0.87 2 23 6.8e-05 0.0077 18.1 2.1 1 23 273 295 273 295 0.98 3 23 0.091 10 8.3 0.4 5 23 322 340 319 340 0.90 4 23 2 2.3e+02 4.0 8.3 1 23 360 382 360 383 0.95 5 23 0.001 0.12 14.4 3.4 1 23 388 410 388 410 0.98 6 23 0.00079 0.089 14.7 3.7 1 23 416 438 416 438 0.98 7 23 0.0042 0.48 12.5 0.2 1 23 444 466 444 466 0.98 8 23 0.00055 0.063 15.2 0.8 3 23 473 493 471 493 0.92 9 23 0.00029 0.033 16.1 2.4 1 23 499 521 499 521 0.99 10 23 0.017 1.9 10.6 8.0 1 23 527 549 527 549 0.97 11 23 0.28 32 6.7 3.1 1 23 561 583 561 583 0.97 12 23 0.033 3.7 9.6 0.1 2 23 590 611 589 611 0.95 13 23 0.0003 0.034 16.1 3.2 1 23 858 880 858 880 0.98 14 23 0.1 12 8.1 0.4 1 21 886 906 886 907 0.88 15 23 0.074 8.4 8.5 1.0 1 23 947 969 947 969 0.97 16 23 0.001 0.12 14.4 5.9 1 23 975 997 975 997 0.98 17 23 0.0012 0.14 14.2 6.4 1 23 1003 1025 1003 1025 0.99 18 23 0.44 50 6.1 0.2 1 23 1031 1053 1031 1053 0.89 19 23 0.025 2.9 10.0 1.5 1 23 1086 1108 1086 1108 0.95 20 23 1.8e-05 0.002 19.9 4.3 1 23 1114 1136 1114 1136 0.99 21 23 0.078 8.9 8.5 2.3 1 23 1148 1170 1148 1170 0.98 22 23 0.025 2.9 10.0 0.3 2 23 1177 1198 1176 1198 0.95 23 23 3.9 4.4e+02 3.1 0.1 3 23 1206 1227 1204 1227 0.94
Sequence Information
- Coding Sequence
- ATGAATTCTTTAAGAAAGGACACTTTGCAAGATGAattgaaaatgaagaaaatatgcCGCTTTTGCTTATGTCAGGATCATTCCAAACTAACAAACATTTATATGGGAGATACATGCATCAAGTCTTCAGCACCGCTACCCATTCAAATAATTTCCATAACATCAATTGAAGTCTTCAGCAATGACGACATGCCTCTTTATGTGTGCTCTGATTGTACAAACATGTTTGAGCTCAGTTATCAATTTAAACAGATGTGCAAAAAGGCTAACAATCTATTACGTCAATTCCTGTTAACAGGGATATGGCCAGCCAGTTTAGACAAACCCGTATTGATGACAAATCAGTTTCTCCAGGAGAAATTACCGACGACAAGTAAACGCAACACGAATCAAGACAGCATGGATCATATCGATGAAGCTTTGCTATggccgaaaaaaaatttgagctCGTCTGCAAACTCATCTGGTGCTGTCATCTCTTCCAGCATCTTGTCACTAtccgaaaaaaatttggatTGCTCAATAACATTTTTAGATAGAATTGGAAATAATGAGATATTGCAGGATTATACACGTCAATTAGTAGCCGCAGAAGGTTTAAGTGAAAGCGGTTATGTAGAAAGAGATAATGTACCGGTGGTGATTGTTTCAGAAAATCAAACGTACAcgccaaaattattaaataactcATCTAGGGGAATCCTTAGCAAAGAAGTAAAACGAGAGAATGAGCCTTGTttaagtttaccgaaatttaaTAAAGATGTGGACAGCAGAATGGAAATAGTTTCGGATTTTCAACGTGGTGAGAAGCCCTATAAATGTTCTTTATGTGATCAAGCTTTTTCGCGTTCAACCATGTTGGCACATCACGAAAAGTCCCATATGGATGTACCAGAATATATAGATGACCATTGTGATCGGTCGTTTTTATTGAAAGAGGATATGGAAAAGCATGTCAAAGTTTGCAATAAAAACTTTGCTTCTAGTGAATCTTTCGAGCGTCATAATGTAATACATCAAAGTGAAGTAGATCCAAATAATATTGCTGTAACCGATGCAACTGAAACCAATGTATATCCATGTTCTCACTGTAAACGCACTTTTAAATTGCTACAACAGCATGACAGTCATATGAAAACCCATCACCGCGAACGTAAATTTAAATGCGACTACTGTGAAAAATCGTTCTTTCGACTTGAGAATAAGAAAACTCACTCTCGCATTCACACTGGTGAGAAACCATATAAATGCTCTGTGTGTCATCAAGCTTTTGCACATCGAGTATCTTTGAAACTCCATGAAAATAAACATACGGATGTACCAAAATATATATGCCCCCTTTGTGAGCAGTCCTTTCTGTCGAAAGAGGATATGGAAAAGCATATAGAAAggcacaaaaaacaaaaatctatttgtaaaatttgcaataaagcattTAGAAATAATCAAGTTCTCAAGCGTCATGAATCAGATCATGCACGGCAAAAACTCTATACATGCCAGTACTGCGACGAGAGCTTTCCAACTACTATCACATTGTATCATCATTTGTCCACCCACGCTGGTAAAAGACGATATCATtgcaaatattgtaaaaaagcgTTTTTATATGAACATAATTTGAAAAGACACTTGcgatttcacaaaaatttcgaTGACCCTGGTAATATAGTCTCATTTAAGTGCATGAAATGTTTGTGTAATTTTGGAACTCGCGATGAGCTCATAAGTCATTCTACCACACATGCAAATGAAATGAAGTTATCATGTTCTTTGTGCAAAGATGTATTCGACAATATATCAGATTTGAACTCTCATATTCAAGGTCATTCTCAAGTTGAAGCGAGTGCATGTAAATTTTCCGAATTGATCTTTTTAACTGCAGAAAAATTACAATCACATGCGGATATTGATCATATTACTGAAATGGAAGCATACAATACCGACCACCATGCTAGGCCCAATAAGCTTAGGAAAGATAATAAAAGCCAAATAGACATTATAGATATTggtgatgaaaagcttcaagaAACAACATGTGATTTTTTCGTCAAACCCGTTTTACTAACAAAACAATGTATCCAGGAAACATTAGCGACGCCGCCGAGTACAAACAAATCGAATCAATACAGCATGCAATATAACGGGAAAACATCTCTTGTGCAGGAAACATTGCCATTGATAAACAAAATACTAAGCTCGTCTGAAGACTCATccactactgtcatatcttccGAGATCTCATTACAATCCAAAAAAGACGTAGGTTGCGCAATAacatttttagataaaattgaaaataaggACTTATCGCTGAAGGATGTACATCAATTCATAGCCGGGGAAGATGTAATTGAAAGCGGCTATGTTAAAATGGATAATGTACCGGTGGTTATTGTTCCAGAAAATCTAACTCACaagccaacatttttaaataactcATCTACAAGAATCATTAATAAAGAGGCGGAACCAGAGAATGACCCTTGTTTAAGTTTACCGAAAGTTAATAATGATGTGGACAGCAGAATGGAAATAGATGCAGACTTTCAACGGTGTGAGAAGCcctataaatgttttttatgtgaTGAAAGTTTTTCGCATTCAACCATGTTGACACTTCACGAAAAGTCCCATATGGATGTCCCAGAATATATATGTGACCATTGTGATCGGACCTTTTTATTGAAAGAGGATATGGAAAAGCATGCCAAAAGTAAAGTTTGCAATAAAAGCGTTGCTTCTAGTGAATCTGTCGAGAGTAATAATgcaatacatatatatgaagCAGATCCAAATAATACCGCTCTAACCGATGTAATTGAAACCAATGTTTTTCCATGTTCTCATTGTGAACGCATTTTTCCATTGTTACAACTGCGCAACATTCATATGAAAAACCATTTCCGCGAACGTAAATTTAAATGTGACTACTGCGAGAAATCGTTCTTTACCAAAGGTCATAAGCAAAATCACTATAAGGTTCACTCTAATCAGAAGCCATTTAAATGTTCTGTATGTCATAAAGCTTTTAAAAGTGTAGTATGTTTGAGACGTCACAGTAAGACCCATAGGGACGTACCAAAACATATCTGCCCCCTTTGTGATCAGTCCTTTTTATTGAAAGAGGATATGGCAAAGCATGTAGAAGGACACAAACACCATAAGTATATTTGTGATATTTGCAATAAAGGGTTTTTGACTATCCATTGTCTCGAGTGTCATAAAGCCATTCATTCACGCCAAAAGCTCCATTCCTGTCAGTACTGCGAAGAGACCTTTCCAACTACTATCAAATTGTATAATCATTTGACCGCCCATGCTGGTAGAAAACGATATAAAtgcaaatattgtaaaaaagcgTTTACATATGGACGTACTTTGAAAAGACACTTGCGATCTCACGAAAATAACGATGACCCTGGCAATGTTGTCTCATTTAAGTGCATGAAATGTTTCTGTATTTTTGGAAGCCGTGATGAGCTCATAAGTCATTCTATAACACATGGAAATGAAATGGATTTATCATGTTCTTTGTGCAAAGATGTATTCGATAATATATCATATTTGAACTCTCATATGCAAGATCATTCGCAAGGTGAGGCGTATGGATGTGAATTTTGCGATTTCATCTTTTTAACTGAAGAAAAATTACAATTGCATGCGAATATTGATCATATTGCTGAGATGGAAGTATACAATACCGACGACCATGCTCGGCCCAATAAGATTAGGGAAGACAATAAAAGCCAAATCAACATTATAGATATTGGAGATGAAAAGCTTCAAGAAGCATCTTATGACTTTTTCGTCGATGAATTAACTTCCGAAGGAAACGACTCGGAGATTTCTTTGAATAAAGATATAAAAGGAacaagtacactctaa
- Protein Sequence
- MNSLRKDTLQDELKMKKICRFCLCQDHSKLTNIYMGDTCIKSSAPLPIQIISITSIEVFSNDDMPLYVCSDCTNMFELSYQFKQMCKKANNLLRQFLLTGIWPASLDKPVLMTNQFLQEKLPTTSKRNTNQDSMDHIDEALLWPKKNLSSSANSSGAVISSSILSLSEKNLDCSITFLDRIGNNEILQDYTRQLVAAEGLSESGYVERDNVPVVIVSENQTYTPKLLNNSSRGILSKEVKRENEPCLSLPKFNKDVDSRMEIVSDFQRGEKPYKCSLCDQAFSRSTMLAHHEKSHMDVPEYIDDHCDRSFLLKEDMEKHVKVCNKNFASSESFERHNVIHQSEVDPNNIAVTDATETNVYPCSHCKRTFKLLQQHDSHMKTHHRERKFKCDYCEKSFFRLENKKTHSRIHTGEKPYKCSVCHQAFAHRVSLKLHENKHTDVPKYICPLCEQSFLSKEDMEKHIERHKKQKSICKICNKAFRNNQVLKRHESDHARQKLYTCQYCDESFPTTITLYHHLSTHAGKRRYHCKYCKKAFLYEHNLKRHLRFHKNFDDPGNIVSFKCMKCLCNFGTRDELISHSTTHANEMKLSCSLCKDVFDNISDLNSHIQGHSQVEASACKFSELIFLTAEKLQSHADIDHITEMEAYNTDHHARPNKLRKDNKSQIDIIDIGDEKLQETTCDFFVKPVLLTKQCIQETLATPPSTNKSNQYSMQYNGKTSLVQETLPLINKILSSSEDSSTTVISSEISLQSKKDVGCAITFLDKIENKDLSLKDVHQFIAGEDVIESGYVKMDNVPVVIVPENLTHKPTFLNNSSTRIINKEAEPENDPCLSLPKVNNDVDSRMEIDADFQRCEKPYKCFLCDESFSHSTMLTLHEKSHMDVPEYICDHCDRTFLLKEDMEKHAKSKVCNKSVASSESVESNNAIHIYEADPNNTALTDVIETNVFPCSHCERIFPLLQLRNIHMKNHFRERKFKCDYCEKSFFTKGHKQNHYKVHSNQKPFKCSVCHKAFKSVVCLRRHSKTHRDVPKHICPLCDQSFLLKEDMAKHVEGHKHHKYICDICNKGFLTIHCLECHKAIHSRQKLHSCQYCEETFPTTIKLYNHLTAHAGRKRYKCKYCKKAFTYGRTLKRHLRSHENNDDPGNVVSFKCMKCFCIFGSRDELISHSITHGNEMDLSCSLCKDVFDNISYLNSHMQDHSQGEAYGCEFCDFIFLTEEKLQLHANIDHIAEMEVYNTDDHARPNKIREDNKSQINIIDIGDEKLQEASYDFFVDELTSEGNDSEISLNKDIKGTSTL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -