Basic Information

Insect: Panzeria rudis
Gene Symbol: -
Assembly: GCA_956483635.1
Location: OY101451.1:98599323-98601922[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 2.5e-05 0.0029 19.4 2.6 1 23 176 198 176 198 0.98

2 15 0.0006 0.067 15.1 2.5 1 21 204 224 204 225 0.92

3 15 0.38 43 6.3 3.8 1 19 284 302 284 305 0.94

4 15 4.2e-05 0.0047 18.8 2.5 2 23 315 337 314 337 0.97

5 15 0.0023 0.26 13.3 1.4 3 23 420 440 418 440 0.98

6 15 0.0077 0.87 11.6 3.3 1 23 446 468 446 469 0.95

7 15 0.015 1.7 10.7 0.6 1 23 490 513 490 513 0.96

8 15 1.4e-05 0.0015 20.3 2.6 1 23 519 541 519 541 0.98

9 15 2.7e-06 0.0003 22.5 2.4 1 23 547 569 547 569 0.99

10 15 1.6e-07 1.8e-05 26.4 1.8 1 23 575 597 575 597 0.96

11 15 0.01 1.2 11.2 4.1 1 23 603 625 603 625 0.97

12 15 0.0012 0.14 14.1 2.2 1 23 631 653 631 653 0.96

13 15 8.2e-07 9.2e-05 24.1 0.4 1 23 659 681 659 681 0.99

14 15 1.9e-06 0.00022 23.0 1.7 1 23 687 709 687 709 0.99

15 15 0.011 1.2 11.2 0.1 1 19 715 733 715 734 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	2.5e-05	0.0029	19.4	2.6	1	23	176	198	176	198	0.98
2	15	0.0006	0.067	15.1	2.5	1	21	204	224	204	225	0.92
3	15	0.38	43	6.3	3.8	1	19	284	302	284	305	0.94
4	15	4.2e-05	0.0047	18.8	2.5	2	23	315	337	314	337	0.97
5	15	0.0023	0.26	13.3	1.4	3	23	420	440	418	440	0.98
6	15	0.0077	0.87	11.6	3.3	1	23	446	468	446	469	0.95
7	15	0.015	1.7	10.7	0.6	1	23	490	513	490	513	0.96
8	15	1.4e-05	0.0015	20.3	2.6	1	23	519	541	519	541	0.98
9	15	2.7e-06	0.0003	22.5	2.4	1	23	547	569	547	569	0.99
10	15	1.6e-07	1.8e-05	26.4	1.8	1	23	575	597	575	597	0.96
11	15	0.01	1.2	11.2	4.1	1	23	603	625	603	625	0.97
12	15	0.0012	0.14	14.1	2.2	1	23	631	653	631	653	0.96
13	15	8.2e-07	9.2e-05	24.1	0.4	1	23	659	681	659	681	0.99
14	15	1.9e-06	0.00022	23.0	1.7	1	23	687	709	687	709	0.99
15	15	0.011	1.2	11.2	0.1	1	19	715	733	715	734	0.97

Sequence Information

Coding Sequence: ATGTTAATACTTGAAATATATGGACGGGTGTGTCGCGTGTGTATGTGTAAATCGAATAATTTGCATAACTTAAATGAGATGACCGAAGAGTGTCTCACCATGAATGAAATGTTGTCAAAGACTGTCTCCGGCATACATGCCAACATCGAATTTCCAGTGCCTCAAGAAATTTGTGACTTATGCATGGATCATTTACAAATTTCCTTCAGATTTCAGCAACTGTGTATGACCACTAATGAACAAATGCTTAAAATCTGGGAACAGTCCCAGAAGGCAGAAGTCAAACAACAACCATTAACTGGTGAAGTGGATAATGAGGAAGAACCAGATCCTATTAAAGTTGAATACGATATGGAAGTAGAAGAACAAAAGCTTGATCATGTGGAACTATTAAATGTGGAAAATGGTGAAAAATGGGAATTTATGACATATGACGAAACGTCTGGCAAAGACAAACTgGTGCAGCAAGAAAATTCACCAAAATCAGTGTCCAAATTATCATCTAGTCGACTATACCATGATCGCTTTTCATGCCTAGAATGTAAGGAAACATTTGCAAAACAGTCTCAACTAAAACGTCATCGTAGTAAACATGAATCAACTCATCCTTTTGATTGTCGCAAGTGTACAAAacgttttaaaacaaaagggTTATTGCAAAAGCATTCGAAAAGCtgtaaaaaagacaaaagaaaagGGCTCAGCAAAAACGATAGTGATAACGATGATGACGAGGATATGCCCCTCAGCGctttaaaaaaagtggaaaGTGACAATGAAAgCGATACAACTAAggaaaatgataaaaagaaacgaaaaacTGTTAAAACTGTCGACAAAAAGACTCCGTATTATTGCTCTGAGTGTGatagttattttaaatatgGCTATCAGCTTACAAAACACAGTTGCAACAATAATGATAATGGTTCACATATAAACAAATGTGAATTATGCAGCAAGGATTTTACATCGAAAAATATGCTGCAAAAACATATGAATAGTAAACATAAAGACAACAAGAATACAACAAAGACGGGGAAAATTGTTACAAAGACTtcggataaaaataaaatcatccaCAGCGATGATGATGGGAAGATTGAAGAAATGGATTTAGATCAGGAGAATGATAACGATGATAACTGGAATGATATAAATCAAGGCGATTCGTCGGATGATAGCGATTCTGACTATGCTGAAAAAGACAAAAGCACAGTAAAGTCAAAACCAGAGCCCGATATAAATCAGTTTGGCTGTAACGAATGTGACGcttccttcaggtttgaaaagCAACGCGTCCGTCATATGAAAAAGCATACAGAAGCTCACCGCTTTGTATGTGCTCTATGTTGGGATCGTTTCAAGTATCCACATATGTTGACGAAACATATGGAAAAGCATCATCCTGAGGATAATCCAACGCCTAAAGCCGTGGAGACAAAACCAGAAAATGTGGAAAAGACTCATGTTTGCAGTTACTGTTCATCGGCTTATTCGAATGTTGGTGGCTTAGCCCAGCACATGAGTAAGAAACATCCAGAAATAAAGCCTTTTAAATGTGACAAGTGCGATAAGACTTTTGTAGTTgaagaacatttaaaaatacacacaaatcgACATATGGGCATTAAGAACTTCAAATGTGATCTTTGTGATAAATcattttcatttaaatttgctATGAAACAGCATATGCGCATACATACGGGTGATTTGAACTATTTGTGCACGCTATGTGGTAAAAAGTTCTATAGACCAAGTAATTTGCGTCAGCACATGCAACGTCATGGTGATGATAAACCATATACTTGTCCTCACTGTCCAAAACGTTTTAAATGCCCTTCCGACCGTTATATACATTTAATGTCACATCAGGAGGGTAAAAATCATGTATGTCAGACTTGTGGTGCAAGGTTTTCGCGAGTGGATACTTTACATCAGCATCAAATACTTCATACAGGAGAAAAGCGTTATAAATGCGATCAATGTCCAATGGcATTCCCCCGCTTGATGAACTTAAATCGGCATTTGCGAACTCATACTGGTGAAAAACCATACAAATGTAAATTTTGCGAGAAGGCTTACGCACAAAGTAATGATTTGAACAAACATTTACGCACCCATGTCGGTGAAAACACTTATATGTGTACCCAGTGCCCGGCTGCATATAAATACCAGGCCGACTTAAGGAACCATGAATGGGAGCACTATCGCCTTCAAAAGGAGGCGGAACAGAAAGCAAAAGATGAAGCATCtgcattaaaaatgaaagaTGAAGAAACTGTATTGGAAGTAAAagtatag
Protein Sequence: MLILEIYGRVCRVCMCKSNNLHNLNEMTEECLTMNEMLSKTVSGIHANIEFPVPQEICDLCMDHLQISFRFQQLCMTTNEQMLKIWEQSQKAEVKQQPLTGEVDNEEEPDPIKVEYDMEVEEQKLDHVELLNVENGEKWEFMTYDETSGKDKLVQQENSPKSVSKLSSSRLYHDRFSCLECKETFAKQSQLKRHRSKHESTHPFDCRKCTKRFKTKGLLQKHSKSCKKDKRKGLSKNDSDNDDDEDMPLSALKKVESDNESDTTKENDKKKRKTVKTVDKKTPYYCSECDSYFKYGYQLTKHSCNNNDNGSHINKCELCSKDFTSKNMLQKHMNSKHKDNKNTTKTGKIVTKTSDKNKIIHSDDDGKIEEMDLDQENDNDDNWNDINQGDSSDDSDSDYAEKDKSTVKSKPEPDINQFGCNECDASFRFEKQRVRHMKKHTEAHRFVCALCWDRFKYPHMLTKHMEKHHPEDNPTPKAVETKPENVEKTHVCSYCSSAYSNVGGLAQHMSKKHPEIKPFKCDKCDKTFVVEEHLKIHTNRHMGIKNFKCDLCDKSFSFKFAMKQHMRIHTGDLNYLCTLCGKKFYRPSNLRQHMQRHGDDKPYTCPHCPKRFKCPSDRYIHLMSHQEGKNHVCQTCGARFSRVDTLHQHQILHTGEKRYKCDQCPMAFPRLMNLNRHLRTHTGEKPYKCKFCEKAYAQSNDLNKHLRTHVGENTYMCTQCPAAYKYQADLRNHEWEHYRLQKEAEQKAKDEASALKMKDEETVLEVKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01259363;
90% Identity: -
80% Identity: -