Prud037806.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- pita
- Assembly
- GCA_956483635.1
- Location
- OY101450.1:109524060-109531161[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 29 0.26 29 6.8 0.4 1 17 33 49 33 50 0.86 2 29 0.003 0.34 12.9 0.1 1 23 254 277 254 277 0.96 3 29 1.2e-05 0.0013 20.5 2.8 1 23 464 486 464 486 0.99 4 29 0.51 58 5.9 0.2 1 21 492 512 492 513 0.87 5 29 1.4 1.5e+02 4.6 0.1 5 16 515 526 514 533 0.86 6 29 0.0081 0.91 11.6 1.3 1 23 550 572 550 572 0.98 7 29 1.1 1.3e+02 4.8 0.1 5 16 591 602 590 603 0.88 8 29 0.22 25 7.1 0.6 1 23 626 649 626 649 0.92 9 29 0.14 16 7.7 6.1 1 23 654 676 654 676 0.89 10 29 7.6e-06 0.00086 21.1 2.0 1 23 682 704 682 704 0.98 11 29 0.094 11 8.2 1.1 1 23 710 732 710 732 0.94 12 29 0.00011 0.013 17.4 0.8 1 23 737 759 737 759 0.96 13 29 0.00011 0.012 17.5 0.9 1 23 765 787 765 787 0.98 14 29 6.2e-05 0.007 18.2 6.2 1 23 794 816 794 816 0.99 15 29 2.3 2.6e+02 3.8 1.7 1 23 828 850 828 850 0.88 16 29 0.026 2.9 10.0 0.1 2 23 857 878 856 878 0.95 17 29 0.21 23 7.1 0.1 1 23 884 907 884 907 0.94 18 29 0.0045 0.5 12.4 7.8 1 23 1107 1129 1107 1129 0.98 19 29 0.44 49 6.1 0.1 1 21 1135 1155 1135 1156 0.85 20 29 1.9 2.2e+02 4.1 0.1 5 17 1158 1170 1157 1173 0.87 21 29 0.3 34 6.6 0.2 1 23 1193 1216 1193 1216 0.96 22 29 0.016 1.8 10.6 4.4 1 23 1221 1243 1221 1244 0.94 23 29 0.0002 0.023 16.6 1.4 1 23 1252 1274 1252 1274 0.98 24 29 0.26 30 6.8 1.0 1 23 1280 1302 1280 1302 0.94 25 29 0.00022 0.024 16.5 2.6 1 23 1307 1329 1307 1329 0.96 26 29 0.00046 0.052 15.5 0.6 1 23 1335 1357 1335 1357 0.98 27 29 0.0019 0.22 13.5 6.9 1 23 1363 1385 1363 1385 0.98 28 29 0.13 14 7.8 0.1 3 23 1410 1430 1408 1430 0.95 29 29 1.1 1.3e+02 4.8 0.1 1 23 1436 1459 1436 1459 0.94
Sequence Information
- Coding Sequence
- ATGCAAGATACAGGCATAAAATCTTCAGCACCGCTACATATACAAATAATGGCCATAGCATCAATTGAAGTCTTTAGCAATGATGGCATGCCGTGTTATGTCTGCTCTGATTGTCAAAAAGCCTTTGAGATCAGTTATCAGTTTAGGCAGATGTGCAAAAAGGCTGACGCAATTATACGTCAATTCCCATTAACGGGGAAATTGCCAGACACCTTAAACAAACCAGTTTTGCTGACAAATCAATTTCTCCTGGGAACATTGGCGACGCCGATTAAATGTCCGAAAACGAATGAAAGCAGAATGGTAGATACCGGAAAAACTTTTGTTAAGCAGGAATCTTTGCAGCTGTCAAAAAAAATACTGAACTCTTCTGTAAACTCTGATGTCAGCACTTACGACATTCCGTCACAAACCGAAAGAGATGCGGATagcaaaattacttttttagataaaattgaaaataatgaagaacTATCGCTGGATGATATACGTCAATTAGTAGCCGCGGAAGGTCTAAGTGAAAGCGACGATGTTGAAATGGATAATATATCGCTGGTTGTTCCAGAAAATCAAACTAACAAtcgaaaattattaaataagaaaTCTATAATAATCCTTCAAGAGGAGTCGGAACTTGAGAATGACCCTTGTTTAAGATTACcgaaagttaataaaaatgtggACAGCAAAACGGAAATAGTTGCGGACATCCAGCGTGCTGAGAATGCTCGTATTCAAGATCATTCTCAAGGTGAGGCCTATGCGTGTGAATTTTgcgatttaatattttcaactgtagaaaaattaaaatcacatgtgaatATTGATCATATTAACGAAATGGAAGCATGCAGCGAAATAAACATTATATATATTGCAGATGAAAAGAATCAGGAAACAGAATATGATATTTTCGTCAAATCCgttttattacaaaatcaaTTTATCCAGAGAACATTAGCGACGTCAAGTAAAACCAAAACGAATCAAGACAACATGCAATGTATCGGGAAAAATGCTGTACATCAGGAATCATCTGGTGCTGTCATTTCTTCAACAGTGATCTCGTCACAATCCGAAAGAGATGTGGATTGCacaataacatttttagatAAAAGTGAAAATGAGTTATTGCTGAATGATATTCATCAATTAGTAACCGCGGAAGATGTAAGTGAAAGCGGCTATGTTGAAAGAGATAATGTACCGGTGGTGATTGTTTCAGAAAATCAATCTGACAAaccaaaattgttaaataagtCATATAGGAGAAACCTTAATAAAGAGGCTGAACCAGAGAAAGAGCATTGTTTAAGTTCACcggaaattaataataatatggaCGGCAAAACGCTAATAACTGCTGACTTCCAACGTGGTGAAAAGCCCTATAAATGCtctgtatgtgatcaagtttTTTCGAATTCAACCATGTTGACACATCACGAAAAGACCCATACGGATGCACCTAAATATATATGCGTCGATTGTGATCGGTCCTTTTTATTGAAAGAGGATATGGAAAAGCATTTCAAAAGTAAAGTTtgcaataaaagttttacttctAGTGAATCTCTCGGACCTCATAATGTAATACATAAATATGAAGAAGATTCAAATAATACCCATGTAATTGAAACCTCTGCATTTCCATGTTCTCATTGTGAACGCACTTTTGCATTGTTACAACAGCGCAACATTCATATGGAAACCCATTTTCGCGAACTCCTTTTATTGAAAGAGGATATGGAAAAGCATGTCAAAAGTAAAGTTtgcaataaaagttttacttctAGTGAATCTCTCGAACCTAATAATGCAATACATAAATATGAAGAAGATTCAAATAATACCGATGTAATTGAAACCTCTGCATTTCCATGTTCTCATTGTGAACGCGTTTTTCCATTGGTACAACAGCGTGATATTCATATGAAAATCCAACACCGCGAACGTAAATTTAAATGCGACTACTGCAAAAAATCGTACTTTACTCAACATCAATTGAAATTTCACTCTACCGTGCACACTGGTAAGAAGCCCTTTAAATGTTCTGTATGTGATCAAGCTTTTAAACGTCGAGGACATTTGATAAAACACGAAAAGATCCATAAGAACGTGCGAAAACATATGTGCTCCCTTTGTGAGCGGTCCTTTCTATCGAAAGAGGATTACGAAAAGCATGTAGAATGGCACAaacaactaaaatatttttgtaaaatttgcaataaaggatttattaataataaaactcTCGAGAATCATAAAGCCGTTCATACACGTCAAAATCTCTATACATGCCAGTACTGTGAAGAGAGCTTTCCAACTTCTGGCAAATTGTATTCTCACTTAACCACCCATGCTAATAATATACGAAGTTATACTtgcaaatattgtaaaaagTCGCTTTCAACGCTACATTATTTGAAACGTCACTTGCGATCTcataaaaatatcgatgatcTCGATAATGCCGTTTCATTTATGTGCATAAGATGTAATTGTAAATTTGGAAACCGCGATGAGCTCATAAGTCATTCTACTATCCATGCAACTGAAATGAATCTAGAATGTTCTTTGTGCAAAGATGTATTCGATAATGTATCAGATTTGAAGTCTCATATTCAAGATCATTCTCAAGGTGAGGCGTATGCATGTGAATTTTgcgatttgatatttttaactGCAGAAAAATTACAATCACATTTGGATATTGATCATATTGCTAAAATGGAAGCCTACATTACCGACGACCATACTCGGACCAACAAGCTTCAAGAAACTACATGTGATTTTTTCGTCAAACCCATTTCACTGACAAGTCAATTTATCCAGGGAACATTAGCGACGCCGAGTAAAATCAAACCGAATCAAGACAGCATACAAGATATCGGGAAAACATCTGTTCAGCAGGAATCATTGCTACTGACAAACAAAATACTGAGCTCGTGTGTAAACTCGTCTGCTGCTCTCATCTCATCCGAAATCTCGTCTCAATTTGAAAAGAATGTGTATTGCTCtataacatatttaaataaaagtgataATAACGAGCTATCGCCGAAGGATAAACATCGATTAGTAGTTGCGGAAGATGTAAGTGAAAGCGGCTACGTTGAAAGAGATAATGTACCGGTGGTGATTGTTTCAGAAAATCAAATTAACCaaccaaaattattaaataagtcATCTATGGTAATCCTTAACAAAGAGGCGGAGGAACCAGAGAATGACCCTGGTTTAAGTTTACAGAAACTTAATAATGATGTGGACAGCAGAATGGAAATAGTTGTTGACTTCCAACGTGGTGAGATGCCCCATAAATGTTCTGTATGTGATCAATTTTTTTCGCATTCAACCATGTTGATGCATCACGAAAAGACCCATACGGATGtaccaaaatatgtatgtgtcgATTGTGGTCAGTCCTTTTTATTGAAAGAGGATATCGAAAAGCATGTCAAAAGTAAAGTTTGCAATAAAAGCTTTGCTTCTAGTGAATCTCTCGAACCTCATAATGTGATAGATAAATATGAAGAAGATTCAAATAATACCGATGTAATTGAAACCTAtttatttccatgttctctttGTGAACGCGTTTTTCCATTGGTACAACAGCGTGATATTCATATGAAAACCCAACACCGCGAACGTAAATTTAAATGCGACTACTGCGAAAAATCGTTCTTTCGACTggatcaaaagaaaaatcattcTGACGTTCACCACGTTCACACTAACCAGGAGGCATTTAAATGTTCTGTATGTAATCAAGCTTTTAAACTTCGAGGATATTTGAAAAAGCACGAAAAGATCCATAAGAACGTTCGAAAACATATATGCCGCCTTTGTGAGCGGTCCTTTCTATCGAAAGAGGATTACGAAAAGCATGTAGAATGGCACAAACaacttgaatatttttgtaaaatttgcaataaaggatttattaataagaaaactctCGAGCATCATAAAGCCGTTCATTCACGCCATAAGCTCTATACATGCCAGTACTGCGAAGAGAGCTTTCCAAATACTGCCAAATTGTATAATCATTTGAAAGCCCATGCTGGTGATGTacgatatttttgcaaatattgtaAGAAATCGTTTACAAGAATTTATAATTTGAATTGTCACTTGCGATCACATAAAAACGTCGATGATCCCGGCGATGAGCTCATAAGTCCTTATACTATCCATGCAAATGAAATGAATCTAGCATGCTCTTTGTGCAAAGATGTATTCGATAAAGTATCAGATTTGAACTCCCATATTCAAGAACATTCTCAAGGTGAGGTGTATGCATGTGAATTTTgcgatttattatttttaactgcAGAAAAATTACAATCACATTTGGATATTGATCATATTGCTAAAATGGAAGCACACAATACCGACGACCATACTCGAACCAATAAGCTCAGGGAAGACAATataagtgaaataaataatatagatATTGCGGATGAAAAGCTTCAAGAATCAGCATATGATTTTCTAGTCGACTCgaagattttgttaaaaaagaaagatATAGAATCAGGTATGTATGTTCAAAACAATTGTTAA
- Protein Sequence
- MQDTGIKSSAPLHIQIMAIASIEVFSNDGMPCYVCSDCQKAFEISYQFRQMCKKADAIIRQFPLTGKLPDTLNKPVLLTNQFLLGTLATPIKCPKTNESRMVDTGKTFVKQESLQLSKKILNSSVNSDVSTYDIPSQTERDADSKITFLDKIENNEELSLDDIRQLVAAEGLSESDDVEMDNISLVVPENQTNNRKLLNKKSIIILQEESELENDPCLRLPKVNKNVDSKTEIVADIQRAENARIQDHSQGEAYACEFCDLIFSTVEKLKSHVNIDHINEMEACSEINIIYIADEKNQETEYDIFVKSVLLQNQFIQRTLATSSKTKTNQDNMQCIGKNAVHQESSGAVISSTVISSQSERDVDCTITFLDKSENELLLNDIHQLVTAEDVSESGYVERDNVPVVIVSENQSDKPKLLNKSYRRNLNKEAEPEKEHCLSSPEINNNMDGKTLITADFQRGEKPYKCSVCDQVFSNSTMLTHHEKTHTDAPKYICVDCDRSFLLKEDMEKHFKSKVCNKSFTSSESLGPHNVIHKYEEDSNNTHVIETSAFPCSHCERTFALLQQRNIHMETHFRELLLLKEDMEKHVKSKVCNKSFTSSESLEPNNAIHKYEEDSNNTDVIETSAFPCSHCERVFPLVQQRDIHMKIQHRERKFKCDYCKKSYFTQHQLKFHSTVHTGKKPFKCSVCDQAFKRRGHLIKHEKIHKNVRKHMCSLCERSFLSKEDYEKHVEWHKQLKYFCKICNKGFINNKTLENHKAVHTRQNLYTCQYCEESFPTSGKLYSHLTTHANNIRSYTCKYCKKSLSTLHYLKRHLRSHKNIDDLDNAVSFMCIRCNCKFGNRDELISHSTIHATEMNLECSLCKDVFDNVSDLKSHIQDHSQGEAYACEFCDLIFLTAEKLQSHLDIDHIAKMEAYITDDHTRTNKLQETTCDFFVKPISLTSQFIQGTLATPSKIKPNQDSIQDIGKTSVQQESLLLTNKILSSCVNSSAALISSEISSQFEKNVYCSITYLNKSDNNELSPKDKHRLVVAEDVSESGYVERDNVPVVIVSENQINQPKLLNKSSMVILNKEAEEPENDPGLSLQKLNNDVDSRMEIVVDFQRGEMPHKCSVCDQFFSHSTMLMHHEKTHTDVPKYVCVDCGQSFLLKEDIEKHVKSKVCNKSFASSESLEPHNVIDKYEEDSNNTDVIETYLFPCSLCERVFPLVQQRDIHMKTQHRERKFKCDYCEKSFFRLDQKKNHSDVHHVHTNQEAFKCSVCNQAFKLRGYLKKHEKIHKNVRKHICRLCERSFLSKEDYEKHVEWHKQLEYFCKICNKGFINKKTLEHHKAVHSRHKLYTCQYCEESFPNTAKLYNHLKAHAGDVRYFCKYCKKSFTRIYNLNCHLRSHKNVDDPGDELISPYTIHANEMNLACSLCKDVFDKVSDLNSHIQEHSQGEVYACEFCDLLFLTAEKLQSHLDIDHIAKMEAHNTDDHTRTNKLREDNISEINNIDIADEKLQESAYDFLVDSKILLKKKDIESGMYVQNNC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -