Prud011821.1
Basic Information
- Insect
- Panzeria rudis
- Gene Symbol
- -
- Assembly
- GCA_956483635.1
- Location
- OY101448.1:5691634-5709455[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.0081 0.92 11.6 0.1 2 23 65 87 64 87 0.93 2 21 0.0088 0.99 11.4 0.2 2 23 97 119 96 119 0.97 3 21 0.0091 1 11.4 3.4 1 23 125 147 125 147 0.98 4 21 0.0014 0.16 14.0 1.6 1 23 153 175 153 175 0.95 5 21 0.061 7 8.8 0.1 3 23 183 203 182 203 0.98 6 21 0.0016 0.18 13.8 0.2 2 23 209 231 208 231 0.94 7 21 0.011 1.2 11.2 1.4 1 23 237 259 237 259 0.99 8 21 0.031 3.6 9.7 0.0 2 23 338 360 337 360 0.88 9 21 0.00044 0.05 15.5 0.4 2 23 370 392 369 392 0.97 10 21 0.0043 0.49 12.4 1.6 1 23 398 420 398 420 0.95 11 21 1.4e-05 0.0015 20.3 0.3 1 23 426 448 426 448 0.97 12 21 0.039 4.4 9.4 0.1 3 23 456 476 455 476 0.98 13 21 0.0025 0.28 13.2 0.2 2 23 482 504 481 504 0.94 14 21 0.015 1.7 10.7 2.1 1 23 510 532 510 533 0.96 15 21 0.0026 0.3 13.1 1.0 2 23 611 633 610 633 0.94 16 21 0.00032 0.036 16.0 0.1 2 23 643 665 642 665 0.97 17 21 0.00046 0.052 15.5 3.8 1 23 671 693 671 693 0.98 18 21 0.00015 0.017 17.0 0.7 1 23 699 721 699 721 0.95 19 21 0.015 1.7 10.7 0.2 3 23 729 749 728 749 0.98 20 21 0.0016 0.19 13.7 0.2 2 23 755 777 754 777 0.94 21 21 0.0082 0.93 11.5 3.2 1 23 783 805 783 806 0.96
Sequence Information
- Coding Sequence
- ATGGCAACACTGCTATTACGTATTGATAACAACAAATGTGATGAGAATGATAGCGAAGAAATAGTACGTAAACCAGTTAAACGCACGAAAAGAGCTAAACAACGAAAGGAAACCGTTCTAACATCATCGCACAATGACGAAttgaatgaaacaaaaaatattaataaagacGATGATGCCAAAGAAGCGATTGTTTGCGATATATGTTCGCAAACATTTCCCACTATTTACACATATATAAGACATGAAAAAGCAGAACATTCTTCAGAaacaaatgaagaaaaaaataaatgtccTTTATGTTCACAAGAATTTAGAAGTATTTGGTCTATAAAGAATCATATAAAAGTCGTTCACGACAAACTGAAACCCTATAAATGTTCTCACTGTCCAAGAAGTTTTGCGGTAGACCATAACAAACGAGTTCATGAACTTACACACACGAATAGTTTTCCCTATGCTTGCGAATATTGTGACAAACGTTTTCGcattttgcataaattaaagaTTCATTCGGAAATACATACGACTAATCCCGAACTTTTGTGTCCCATCTGTAAAAGAATCCAAAAGTCGCAGGAAGAATTAgaagtgcatgtaaaaaatCATGATGATAATCGTTTGCAATGTCCTTCGTGTGGTAACCTATTCCGAAGAAGTGCACAACTTAAAGATCATTATAATGCAGTTCACTTAAAATTACGTCCTTTTAAATGCGaattttgtgaattaggttttGGTGACCGAAAGACGCGTCGTGTACATCAGAGATCACATCTTAAGCAAAAGCTTTCAATATCtgcaaaagAAAAATCTGGAAAACGTACAACGAGACGTAATCGTAGAAAAAAAGTCAAAGAATCAGATGATAGTGAAGAACTAGTACGTAAACCAGTTAAGCGCAAGAAAAAGgctaaacaacaaaagaaaaatgttgtaaCAACATCTCACACTGACGAATTGAATGAAGAGCAAAATATTAATCAAGACGATGATGCAAAAGATGCAATTGTTTGCGATATATGTTCGCAAACATTTCCCACTATTTACGCATATATAAAACACGAAGAAGCAGCACATTCTTCAGAAAGGAATGAAGAAAAGAATAAATGTCCGATATGCtcacaacaatttaaaaatagttggTATATAAGGAATCATATAAAAGTCGTTCACGACAAACTGAAGCCCTATAAATGTTCTCACTGTCCAAAAAGTTTTGCAGTAGACAATAACAAACGAGTTCATGAACTTTCACACACGAATAATTTTCCTTATGCTTGCGAATATTGTGACAAGCGTTTTCGCATTCCCAGTAAATTAAAGATTCATTTAGAAATACATACGACTAATCCCGAACTTTTGTGCCCGATCTGTAAAAGAGTCCAAAAGTCACTTGAAGAATTAGAAGTGCATGTAAAGAAACATGACGATAATCGTTTACAATGTCCTTCGTGTGGTAACCTATATCGAAGAAATTCACAACTTACAGATCATTATAATGCAGTTCACTTAAAATTGCGTCCTTATATATGCGAATTTTGTGAATTGGGCTTTGGGGACCGAAAGACGCGTCGTGTACACCAGAGAACACATCATAAGCAAGAGCTTTCAATATCtgcaaaagcaaaatctggaaaaaacacaacaaaacgTAATCGTAGCAAAAAAGTCAAACAATCAGATGATAGTGACGAACTATTACGTAAACCAGTTAAACGCACGAAAAAAGCTAAACAGCCAAAGAAAACTGTAGTAACGACATCGCAAACGGACGAATTGAATGAAACGCAAAATATTACTGAAGACGATGATGGAAAAGAAACGATTGTTTGCGATAAATGTTCGCAAACATTTCCCACTATTCACACATATCAAAGACACCAACAAGCAGAACATTCTTCAGAAACAAATGAGGAAAAGAATAAATGTCCGATATGTTCAAAAGAATTTAGAAACAGTTGGTATGTAGTGGATCATATAAAAGTCGTTCACGATAAACTGAAGCCCTATAAATGTTCTCATTGTCCGAAAAGTTTTGCATCAGCACATTCCAAACGAATACATGAACTTACACACACGGATAGTTTTCCCTATGCTTGCGAATATTGTGACAGGCGTTTTCGCCTTTCCAGCAAATTAAAGATTCATTCCGAAATACATACAACCAAACCCGAACTTTTATGTCCCATCTGTAAAAGAAGCCAAAAGTCGCAGGAAGAATTAgaagtgcatgtaaaaaatCATGACGATAATCGTTTACAATGTCCTTCGTGTGGTAACCTATTCCGAAGAAATGCACAGCTTAAAGATCATTATAATGCAGTTCACTTAAAATTGCGTCCTTATAAATGTGACTTTTGTGAATTGGGTTTTGGGGATCGAAAGACGCGTCGTGTACACCAGAGAACACATCATAAGAAAGAGCTTTCAGTATCGTAG
- Protein Sequence
- MATLLLRIDNNKCDENDSEEIVRKPVKRTKRAKQRKETVLTSSHNDELNETKNINKDDDAKEAIVCDICSQTFPTIYTYIRHEKAEHSSETNEEKNKCPLCSQEFRSIWSIKNHIKVVHDKLKPYKCSHCPRSFAVDHNKRVHELTHTNSFPYACEYCDKRFRILHKLKIHSEIHTTNPELLCPICKRIQKSQEELEVHVKNHDDNRLQCPSCGNLFRRSAQLKDHYNAVHLKLRPFKCEFCELGFGDRKTRRVHQRSHLKQKLSISAKEKSGKRTTRRNRRKKVKESDDSEELVRKPVKRKKKAKQQKKNVVTTSHTDELNEEQNINQDDDAKDAIVCDICSQTFPTIYAYIKHEEAAHSSERNEEKNKCPICSQQFKNSWYIRNHIKVVHDKLKPYKCSHCPKSFAVDNNKRVHELSHTNNFPYACEYCDKRFRIPSKLKIHLEIHTTNPELLCPICKRVQKSLEELEVHVKKHDDNRLQCPSCGNLYRRNSQLTDHYNAVHLKLRPYICEFCELGFGDRKTRRVHQRTHHKQELSISAKAKSGKNTTKRNRSKKVKQSDDSDELLRKPVKRTKKAKQPKKTVVTTSQTDELNETQNITEDDDGKETIVCDKCSQTFPTIHTYQRHQQAEHSSETNEEKNKCPICSKEFRNSWYVVDHIKVVHDKLKPYKCSHCPKSFASAHSKRIHELTHTDSFPYACEYCDRRFRLSSKLKIHSEIHTTKPELLCPICKRSQKSQEELEVHVKNHDDNRLQCPSCGNLFRRNAQLKDHYNAVHLKLRPYKCDFCELGFGDRKTRRVHQRTHHKKELSVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -