Prud044990.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Panzeria rudis
Gene Symbol
-
Assembly
GCA_956483635.1
Location
OY101451.1:82093483-82105293[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0013 0.14 14.1 2.1 1 23 223 245 223 245 0.98
2 16 3.1e-06 0.00035 22.3 0.6 1 23 252 274 252 274 0.99
3 16 0.00023 0.026 16.4 0.7 1 23 280 302 280 302 0.93
4 16 8.3e-05 0.0094 17.8 0.1 2 23 309 330 308 330 0.96
5 16 0.0021 0.23 13.4 3.6 1 23 337 359 337 359 0.96
6 16 8e-06 0.0009 21.0 1.2 3 23 367 387 365 387 0.98
7 16 4.2e-05 0.0047 18.8 2.5 1 23 393 415 393 415 0.98
8 16 3.9 4.5e+02 3.1 1.2 1 12 421 432 421 443 0.86
9 16 0.0016 0.18 13.8 2.3 1 23 566 588 566 588 0.98
10 16 6.5e-06 0.00073 21.3 0.6 1 23 598 620 598 620 0.98
11 16 0.00024 0.027 16.4 3.9 1 23 626 648 626 648 0.92
12 16 5.5e-07 6.3e-05 24.7 0.8 1 23 654 676 654 676 0.97
13 16 0.00015 0.017 17.0 1.4 1 23 683 705 683 705 0.96
14 16 2.1e-07 2.3e-05 26.0 1.1 1 23 711 733 711 733 0.98
15 16 8.5e-07 9.6e-05 24.1 3.4 1 23 739 761 739 761 0.99
16 16 1.5 1.7e+02 4.4 0.3 1 23 767 789 767 789 0.80

Sequence Information

Coding Sequence
ATGCCTAAACCAATGGATAATATATGTCGTACTTGCTTGCTGTATAATGAACAATCATTTAAAGAGTCTGAACCAGATGAAATAAGATTGGTTTCAATTTTGGTCGTTCTGGAAGAAGCCGGGGCCGAAAACCTTAGCCTAAAAGATTTAATGAAAACCACAGTCCCACAATTAGAAATTAAGGAAAATGATCAGttgccaaaaaatatatgcaaaaaatgcGCGGAAAAAATTATAgacatttataattttcaagtaaaatgtttaaaaagtgaaGAAACAATTTACAAAATGTTAGAATTAGGCGATATCAGCAACTTAtttaataacacaaaaaatccGCTCgaaattgttgttaaaaatgagaaaattaatgATCTTTTCGATCAAAATATTTCTATGGAGTTATTAACTGACGAAAAGATCGTAGAAAACAACTTTAGTACCGAGGACAACAGCAACAGCTCTGATGAATTGATACGTAATGAAAATACCGAAAGTAATGTGGAAGAgagtaaaacaaaagaatcaaaacaTTCAAAAACAAGCCAGATTGGTGATGTTAAAATAAAAGGTGAACCAAATGAAACAATGAAGGGACCTAAACCAGTAGCAAGAAAAGCAAAGTTCCTAAAGAAAAAAGATAGCCAACGGGATCAACAGTTTTATCCTTGTGATAAAtgcaaaagaaaactaaaatcagaaatGTCATTAAAAAAGCATCAAACAATGCACGACAATAAAGAACAGATATATAAATGTTCAATATGTAACGAAGTATTTGATGATAAATCGATATTAAAAGATCACATGCGAACGCACAGtggcgaaaaagtatttttatgttCGCAGTGTGGAAAAGGATTTACAACATCCGGAGGTTTGAAAGAACATTCATATCgccatttaaatgaaaaaaacgttCCTTGTCCTGACTGTCCCGCTTCGTTTACGAATAAAAATGATCTAGTGTCACATCATATAATTCataaagcaaaaccaaaaaatcacatttGTGACATATGCGGACGAGGTTTCCACAAGCCCTTCCTattgaaaaaacacaaaatgtatcaCAATAATGACAGACCATTTGGCTGTGAGTTTTGTGAAAAACGCTTTGTCACAAATGAAAATCTAAAACGTCATACTCGCATTCATACCGGCGAAAAACCTTACAAATGCGATTATTGTAAAAATGCCTACTGCCAGTCGAGtgaattgataaaacatttgCGTGCCCATTTAGGCGAAAATGTCTATCAATGTGAACTGTGTCCTCTGCGTTTTGAAACGGTCAAAATTTTACGATGTCATTTTTCTTCACATAAAAATGACGATGATGAAACTAAGGAACGAAACTTAAAAGAATTGAATGCATTAGAAATGAAagATGACAGTAGTATTGGCCATTCATTCTTATTCATCAATAGGCCAAGCTTGATGGAGATTGAGGCTATGAAGATAAtcatgaatgatacacttaatcgCGATATTGTAACAATCTCAAAATGCGGTGATGCGAATAGAAAAACTGAAATAACAAATATTCTTAAACAAGAAGAGTTTGATGATGAAGTATTTGAACCAGTGACATATGACGATGATGAAGATGTTAaagatgatggtgatgatgaggACTTTGaggttttaaattcaaaaacagtaaataaacaaacttttgtgGAACAACTTTATCCCTGTGAAAGAtgtaaaagaaaactaaaatcaaaactatCTTTAAAAAAGCATCTACAAATGCATGCAAAACGTGATAATGAGGAACCTAAATTTATGTGCAATATTTGTGATAgagGTTTTTCACAAGGTTACATGCTAAAAGATCATCTACGTACTCATAGTGgtGAAAGACCATTTTTATGCTCGGAGTGCGGTAAATCTTTTACATCGTCCGGCTGTTTAAAACAACATTCATTCCGTcatctaaataaaaaacaattttcctgtccggactgtcccaaaacgtttACAACTAAAACTAATTTGAGTTCACATTATGATGTTCATAAAGCAAGGCCTAGAACGCATATTTGCGATACTTGTGGTCGCGGCTTTCCAACACCgtttcttttaaaaaagcataaaatgTATCACACTAACGATCGACCTTTTTCCTGCGAATATTGTGGTAAACGttttataacgAACGAGAAACTACAACGTCATGTGAGAATTCATACTGGTGAAAAGCCATACAAATGCAGCTATTGCGAAAAAGCCTACTGCCAGTCGAGTGAATTAACCAAACATTTACGAGTTCATTTAGGTGAAAATGTATATCAATGCGGACTGTGTCCTCTCAGATTTCCGACAGTTAAAATAGTTCGAGAACATTTCTCTACGCATAAAAACGATGATGAAGAAACTAAAGTTCGCAATTTGGCAGAACTCAATGCTCTTACATTAAAAGGAATTCATTGTAGATAA
Protein Sequence
MPKPMDNICRTCLLYNEQSFKESEPDEIRLVSILVVLEEAGAENLSLKDLMKTTVPQLEIKENDQLPKNICKKCAEKIIDIYNFQVKCLKSEETIYKMLELGDISNLFNNTKNPLEIVVKNEKINDLFDQNISMELLTDEKIVENNFSTEDNSNSSDELIRNENTESNVEESKTKESKHSKTSQIGDVKIKGEPNETMKGPKPVARKAKFLKKKDSQRDQQFYPCDKCKRKLKSEMSLKKHQTMHDNKEQIYKCSICNEVFDDKSILKDHMRTHSGEKVFLCSQCGKGFTTSGGLKEHSYRHLNEKNVPCPDCPASFTNKNDLVSHHIIHKAKPKNHICDICGRGFHKPFLLKKHKMYHNNDRPFGCEFCEKRFVTNENLKRHTRIHTGEKPYKCDYCKNAYCQSSELIKHLRAHLGENVYQCELCPLRFETVKILRCHFSSHKNDDDETKERNLKELNALEMKDDSSIGHSFLFINRPSLMEIEAMKIIMNDTLNRDIVTISKCGDANRKTEITNILKQEEFDDEVFEPVTYDDDEDVKDDGDDEDFEVLNSKTVNKQTFVEQLYPCERCKRKLKSKLSLKKHLQMHAKRDNEEPKFMCNICDRGFSQGYMLKDHLRTHSGERPFLCSECGKSFTSSGCLKQHSFRHLNKKQFSCPDCPKTFTTKTNLSSHYDVHKARPRTHICDTCGRGFPTPFLLKKHKMYHTNDRPFSCEYCGKRFITNEKLQRHVRIHTGEKPYKCSYCEKAYCQSSELTKHLRVHLGENVYQCGLCPLRFPTVKIVREHFSTHKNDDEETKVRNLAELNALTLKGIHCR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-